Carg00866 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00866
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cyclin-H1-1
Location	Carg_Chr03: 7141529 .. 7149391 (-)
RNA-Seq Expression	Carg00866
Synteny	Carg00866

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATATATTGATCAGCTCCGGCCCAACACGCGCGCATATTTGTTCATCTTTCTCCCAGTTCTTGAATCCTTGCAGTGGCAGCTGTCCTTCGACTGTGGCGGCACCAAGGTTTCTGAGTAGCCATGGCCGAGCCAAATGGATTTTGGATCCTCAGGAACTGGTACTGATTTCTTCCTTTGTGTTTTGGTTTTATTTTTATTTTTTTTCTCGTGTCGGTTTGGGGAAAGATATTTACCACTACTGCCGATAATCGATTCTCGTTGGCTTCTGATCAAATGAGCTTCAAGTAATCTACAATTAGGCGTTTGTTTAGATTGCCTTATTAAGCAACTGGAGTTTCTTACTTCTACGGTAACTTGATGCCAAGTGTATGGCATTAGTTTTCAATTGCTTTAGTTGGACGCATTAGTTTTATTGCTATCTGTTCTATGGCTCGGGGAGGACGCAACAAATTGGAAATGTGGAATACAGAATTAATTTTAAATTCGTTTCAGCATGTGCTCTCCCAGGTGACAATTGTTAGGCGAACTTTATTTGATAAATTAGCTGGACGATTGTTGGCTTTTGAGGAGTTATACTGGTTTTAAGGACTCGATGTTGAATCGATGGTGTATCTAAACTGTCAACTTACTGCTATGATAAAAATACGATCATTTCGACTCCTTTGTTGTACAGATTTGTAGGTACAAAGCGGCTAACCAGAGAGCAATCGAAGCTCTGGAGAAGGTATGAATAGAATGAGATGGTACTTAACCTGTTTGAGGAATACGACTCTCCATAATGGTATGATATTGTCCACTTTAGGCATAAGTTCTCGTGGCTTTGATTTGAGTTTTGAGTTTTCTCAAAAGGCCTCGTACCAATGGAGATAGTATTCTTTGATTATAAACCCATGATCATTCTCTAAATTAGCCGACGTGAGACTTTCATCATCCATACAATAGTGTATTGTACAGGAAAAGGTTTAAAAATCAATTTTTTCATGCTTCATCTTTTTCCCAAAACTTCAAATTGCTGACGGCAATTCTCTTCTTCACTTCATATATTTATCTCCAGCAAAAGCATTTGGCATCCGCTTTTATAGTTTTGATATTATTATTTCTGTCAACTAACTCTTCTCTTGGCGTAGTTTGGAGCAACACTAATGGAAGTAGATGCTGACGGATCATTGTCAGTTCCAGACCCTCAGATAAATTCAAAAGATAACGGTAACAGTTCCTCTGCTGCTCTTTTTGCAAGAACGTAAAACTTCAAATTTAGTATTAAACGGCAAACATTCTCTTGCCAAAGCTTTGAGTATTGAAGAAGAGCAATTTATGCGAGTATTTTACGAAAACAAACTTCAAGAAGTATGCAACAATTTTCATTTTCCTCATAAAATCCAGGTATTCAGATAAGATAAGCTGATTGAATGACCCATATCTCTTTTGCATAAAGATTGTTATGTATTTTAAATATTGAAATTGTTGTTTATATGAATCCTTCTTTTATGTTTTTCCTCATTTTTGTTGACTCTTTTCAGGCAACAGCTCTTATATATTTTAAAAGATTCTATCTACAATGGTCTGTGATGCAACATAATCCCAAATATGTGATGTAAGAGTTTAGATGTATATCTGCTTTATATGCTTAAAGCTTCCCATTATTTATTGTGATACAATAATTTGACTTTGCTAAAAATCATTTTGAGGTATGAATGTGGTTGAAATGCTTAGCTCTAGAGAAATTGCTTGGACGTGGGATGTACTTTTGATATTACACTCATCTTAGGAAGTTTTGCTCCCTACAACTTCTTTCACTCTCACTGTCGCTATTATTATCATATGAGCCATAGAGTAGTTTCTGGATGTAGCTAACTGTCTCCTTCACAGGTTAACCTGCATTTATGCAGCTTGTAAGATAGAAGAAAATCACGTCTCAGCTGAGGAGCTTGGTAAGGGAATTTCACAGGATCATCAAATTATTCTCAATTATGAGATGATAGTATATTAGGCATGGATGTGCTACATGACTTGTTGTTATCATGTTCACTTCATTTATTTTTGCTGTGTTTTCTTTAACCCTCTTTTCTTATTTTTTTTTTCTGTTGTTCTACAGTCTGGAATTTGATCTTATTGTTTATGCACCTTACCGATCAGTTAAAGGCTATGTAAACGACATGGAGGTAAATGTAGTCTCTTTTTTTTCTTTTTTTTCTTTTTTTCTTTTTTTAAAATGTGGATTCTCCAGGCGATGCTTAAACTAGATTCGTCTGTTTTTTCTTGGGCATTCTTTACCTTCTTATAAAGTTGGTTACACTTTTTCCTTCTCTTTCATTGATGTTGCACTTGGTGATAAATGGTGCATATTTTCAGGAACTATTCCATGAGAACACTGAAATGCTTCAAATGCTGAAGGTAATTGTTTCATTGTTCAATGTAATAGATATACTGTTGTATGGGTATGTCCGGTCTTTCAGTTTTTACAGTAAACCTGTTGACCAATGCACTGATTTTAATTGGTGAAATTTCTTTCCATGGAGGCACAGATAACTCTAGTCTATTTGTTGCTAATTTCAATGTGAAGTCAGAATTATTTGCTGCATTTTTCTGAGCATTATTACAATCAGTCAATGAGATCAAAGAAACCTGTGCATGTGTTGACAAGAAATAAATGCATTGATCAGACATATAAAACAAGGGGCAGCTAGGAGTCAAGCCCCTAAAACAGAGCCTAGTGAGTAATTTTTTTTTTTTTTTTTAATTAAAGTTGCTTTACAACTTTCTCAACTTCAATTATTGTAAGATCCGCAGGTATTCCTTGAGATTATCAGAAGTATGAGTAGGAAGAAAATAGAGTGAGATGAAAAGTGTGTTTTGTCGAGGATTACTAGGAGTGAGTCCCACATTGGTTAATTTAGTGGAAGATCATGGGTTTATAAGTGAGGAATACTATCTCCATTGGTATGAGGCAGTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTAAAAGTGGACAATATCATACCATTGTGGAGACTCGTGATTCCTAATATGGTATCAGAGCCATGCCCTAAACTTAGCCATGTCAATATAGAATCCTCAAATATCGAACAAAAAATTGTGAGCCTCGAAGGTGTAGTCAAAAGTGACTAGAGTGTCGAACAAAGGGTGTACTTTGTTCGAGGGCTCCAGAGAACGGAGTCCAGCCTCGATTAAGGGGAGGCTATTCGAGAGCTCCATAAGCCTGAGGCTTATAGTGTACTTTGTTCGAGGGGAGGATTGTTGAGGATTACTGGGAGTAGTGAGTCCCACGTTGGTTAATTTAGTGGAAAATCATATAAAGTGATGAATACTGTCTTCATTGGTATGAGGCCTTTTGGGGAACCCCAAAGCAAAGCCATGAGAGCTTATGCTAAAAGTGGACAATATCATACCATTGTGGAGACTCGTGATTCCTAACATGGTATCAGAGTCATGCCCTAAACTTAGCCATGTCAATAGAATCCTCAAATATCGAACAAAGAATTGTGAACCTCGAAGGTGTGGTCAAAAGTGACTAGAGTGTCGAACAAAGGGTGTACCGACAAAGGGTGTACTTTGTTCGAGGGCTCCAGAGAACGGAGTCCAGCCTCGATTAAGGGGAGGCTATTCGAGAGCTCCATAAGCCTGAGGCTTTATGGCTTTGTTCGAGGGGAGGATGTTGAGGATTACTGGGAGTGAGTCCCACGTTGGTTATTTAGTGGAAAATCATATAAAGGGATGAATACTATCTTCATTGGTATGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTAAATGTGGACAATATCATACCATTGTGGAGACTCGTGATTCTTAATATGGTATCAGAGCCATGCCCTAAACTTAGCCATGTCAATATAGAATCCTCAAATATCGAACAAAGAATTGTGAGCCTCGAAGGTGTAGTCAAAAGTGACTAGAGTGTCGAACAAAGGGTGTACTTTGTTCGAGGGCTCCAGAGAACGGAGTCCAGCCTCGATTAAGGGGAGGCTATTCGAGAGCTCCATAAGCCTGAGGCTTATAAGTGTACTTTGTTCGAGGGGAGGATTGTTGAGGATTACTGGGAGTGAATCCCACATTGGTTAATTTAGTGGAAAATCATGAGTTTATAAAGTGATGAATACTATCTTCATTGGTATGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGACTCGTGATTCCTAACATGTTTTTAGTAAGAACGTTGCCTTATTTATTTTAATAGAAAACAATTTTTTGTAATTTTTTGTTACATATGCGAAAGTTGCCTCTCGTATAATTGCAAGATAGTTTTGTTCAGTTCAAACTGTTAGTGAGTTTATTGGTTGACATACTTGTAACATAGTTGCATCAAGGAAAAATCGATGCTTATCTTATGTCTCTCTCTCTCTCTGCCCCTTTTTTGAAACTCTATTTTATATTTTTTTTATTATTTACATCATGCATTTTGAACAGAACTGTCTCGTTATAATTCACATAAAAGTGCTTGATATAAAAAATTAACCGTTTGTTGACTTTGTTTGTGATTTATGAAGGAAACAGCAATGTCAGAGATTGATAATATTATGTTAACAGATGCCCCACTCCTCTTCCCCCCTGGGCAGGTGCTTATTTTCTATTATATTTCCAGTACTAAATTTTCTAATTTAAGACTTAAATCTCTACAATGATTCTTTAATGTACTGGTGCTACAATTGAATTATTAGTGGACTGAACTTAAAGTTTTGAATTTACCCTCGGCTAATCATTTCTTCAGTTCAACACATGGCTAGATGACGTTACATTTCGTAGTTCAATAAAGAAGTTCAGTTTTCATAGTTGTCACATCAGGATCTTTTCATAATTCTTTATTGTGTTTGTTGGGTTTCATCTCAGGAATTCCCTTTGAATTATTTTCGTAATTATTCCATATAACTGGAGAGTGGGTGGGAGAATGGCCTGGTTATGCGCAAAATAGCTTGATGACGAACATCCAGGAAGTAGGTTTATGCAATCAATTCATGCTAGGGAAGTGAGGGGTGGAAGAATACTCTGTGTGTGCGCGCGTCGGGAGGGGGTTGGAATCTTTACATTATCTTTCAGAGAGGTAGAATTTGTTAAGAGGTTGTCTCGATTCATTCCTCTTCTATTCAAGAAATAAATTTTATAATGTTGATCTGAATGATAACCTGGTCACGTACTATTTAATTCTATCTTATTGATCACATGCAGTTAGCATTGGCTGCATTACGCAGATCAAATCAAGGTCATGGAGCTATTGACTTCGATAGGTAAAACGTTTACTGCTCATCTACATTCGTTGAGTTATTTAAAAATTTCCGATCTCGGAAAAGAATTACAATGCTGGATTTGTTATTGCATGCTCTTAGACAGTTTCGTTAGGGATTGTAATTCCATTTAAGTTCTTGTGTTGGTTGAGTAGTTTTTTTTGGCCTTCTAATGTCCTTTCATTTAATTTAATGAAAGATGATTTATTCATTAAAATTTTGAGATATCGTGGAGAGTTATATGGTAATCATCCGTTGGTGTCTGTTACCATCTAACAATTGGATTATTTTTTTTATAAGTTTGGCTCCTAGTTTGGGCTTGTCTTTTTGTATGAAAGTGAAACAATGATCTTGATTATATTCTGGCTGTATTGAAGCCGGTGGAGGTTGCGGGGTTAGGCATTGCGTAACTAAGTTCTTTTGGCAAAATGGTTTTGGTGTTTCTTCAAGGAGCTGAATGCCCACGGTGGAGCCTAATCGCATGTAATTATGGACTTCACCATTTGGCATAGATTTCAGGTAGTATGTTGAAGAGTTCTAGCAAGAAGCTCTGTCTGCTATTGCTTTGGGTTTTCTTCTGTTTTCTCTGTTAGTTAATTGTTCTATTGGAGATGGCTTGAGTTCCGAAATTTTTAAGGATTCTTAGGCAGGAATGTTTTCCACATCTTTATCATTTGTTTGATGAGAGGATGCATTCCGTAGCCTTGCCTTTTCCCTCTTTTGATAACTCTTCCTCTCGTTTCCTGCATTTTTGCTGCCCCCTCATTGAGCGAGAGGCTGTGAGGGTGTCAACGTTCTTTCTATTGTGTTTCACTAGGTGACTCCTCATGGGAGAATTTTCCAGATCCTTTTTACCCTTTCAGGGAGCCTCTTTATTCTCTTTTTGTAAGGTTAAAATTCCTAAGAAAGTGAAATTCTTGCATGACAAGTTTTGTGTGGGAGAGTGAACACTATGGATCATCTTGAGAGACTTTCCTCTTTTGTTTGTGGTCGAAATGGTGTGTTCTCTGCAGGAAGTAGGAAGACCTCGAGCATCTTTCTTGAGAGTGCCCTTTGTTTGCTCCCTTTGAAGTTAGTTTTTCGGGACTGGAGTGCTCTATGTTGGGATAAGTTATTCTGAACCCTCCTTTTTGGGTTGAAAAGGAATAGTGGAATGTTTAGAATGGTTTAGACTTGAGATATTGGCGAGGAGCTTTGCGAGGCGAGTAGATTAAACTCATATTTGTGAGTGTTTGTTAATTGGACTTTTTGTAATTATCAGATTGGCATCATCCTTTTGGAAAAGGGAAAAAACTTCTGCTTTCATGTATTGAAAGCCTGATTATGTTTAATCTTTTATTAGATAAATTATTTTTTAAAATTAAATATTGGAAAATGGCAACATTCCGTTGTTTCCATCCCTAATATTCAATGATTCATTTATTCTTCTCACTTTAAGTGCAGACACCTGGACAGTATCCTCTCTCGCCAAAAGTCTGCACATACAATTTACGAGCTCTTTGAGCGTATAAATTCAATTGAATCGTGGGTATGAAATTGTCTTATCTTTTAACTGATTGAATCAGCAGTCAAAAATTTAGACTGTAGTAGTAGTAGTAGTAGTAGGAAGACATAAATTTAGCTGATTGCCTCTTTTGAACATTTATATCAGTATCTCATACGAATCTGTGGTTTGGTTTCTTTTATAATGTGTTATTGTGTCGTGCTCTCTGTACGGGTCAACAGACATGCCTTCCCATCAGAAAAGGATTTAAAGCACATCAACAGAAAATTAAAATCTTGCTGGGGACTGGGCTCCAATGACGAGTATTTTATTCAACCTTGTGATACCTTAAATAGAATTAGTCTACCTCTTGCTTAATCTAGTACCCCTTATATTTTGTTTCCCAGCTGCTAATTACAAATTCCATCCAAACTTGGCAGGAGGGAAAAAGGGAGAAGAAATCAAAGCACAAATCAAAGAAGAGTTCGAATGAAACGCAAAATATACCTTCGCACAATTAGCTGTATGTCTGCAAGACCTTGCCTTTTCTTGTTCTTCAAGTTCTGTTGTTGAAGAAAATACCCCGTTCGAACTTTTATTCCATTGGTCAAAGACTTGTAGATTGAATGCGGGTGTGTGTCCTAAATGGGCTCGGCATATTATTTGGATTTGTTGCCTATGCCACAGCATAGTCTAGATCCTCGGTGTATAATTAGGAACATTGCTGCTTGGCAGGTACTCTTATCTTAGCCACCTTTGCTTCTGCTGACAGTCGTTTGCTTTCAATCAGGTAACTCAATCTCGGCAGGGTAAGGAGTTCTCTTGCATGAAACCAGCATCCTTGAGCCGCGTTCAACATGAAAATATGGAAAAGGAAAACATCTTGTCAAGCACGGATAAAATTTGTCCCCTCTTTGGTACTCAATTCTCTGATTTTATTCTTTTCTTCAGTCAGCAATATTTGTGGTCAGTGTGACCAAGAAATTTCTGCCAAGTAATGATAACATGGGGACAAAATTTTGA

mRNA sequence

ATGTATATATTGATCAGCTCCGGCCCAACACGCGCGCATATTTGTTCATCTTTCTCCCAGTTCTTGAATCCTTGCAGTGGCAGCTGTCCTTCGACTGTGGCGGCACCAAGGTTTCTGAGTAGCCATGGCCGAGCCAAATGGATTTTGGATCCTCAGGAACTGTTTGGAGCAACACTAATGGAAGTAGATGCTGACGGATCATTGTCAGTTCCAGACCCTCAGATAAATTCAAAAGATAACGCTCTTATATATTTTAAAAGATTCTATCTACAATGGTCTGTGATGCAACATAATCCCAAATATGTGATTCTGGAATTTGATCTTATTGTTTATGCACCTTACCGATCAGTTAAAGGCTATGTAAACGACATGGAGGAACTATTCCATGAGAACACTGAAATGCTTCAAATGCTGAAGGAAACAGCAATGTCAGAGATTGATAATATTATGTTAACAGATGCCCCACTCCTCTTCCCCCCTGGGCAGTTAGCATTGGCTGCATTACGCAGATCAAATCAAGGTCATGGAGCTATTGACTTCGATAGACACCTGGACAGTATCCTCTCTCGCCAAAAGTCTGCACATACAATTTACGAGCTCTTTGAGCGTATAAATTCAATTGAATCGTGGTCAGCAATATTTGTGGTCAGTGTGACCAAGAAATTTCTGCCAAGTAATGATAACATGGGGACAAAATTTTGA

Coding sequence (CDS)

ATGTATATATTGATCAGCTCCGGCCCAACACGCGCGCATATTTGTTCATCTTTCTCCCAGTTCTTGAATCCTTGCAGTGGCAGCTGTCCTTCGACTGTGGCGGCACCAAGGTTTCTGAGTAGCCATGGCCGAGCCAAATGGATTTTGGATCCTCAGGAACTGTTTGGAGCAACACTAATGGAAGTAGATGCTGACGGATCATTGTCAGTTCCAGACCCTCAGATAAATTCAAAAGATAACGCTCTTATATATTTTAAAAGATTCTATCTACAATGGTCTGTGATGCAACATAATCCCAAATATGTGATTCTGGAATTTGATCTTATTGTTTATGCACCTTACCGATCAGTTAAAGGCTATGTAAACGACATGGAGGAACTATTCCATGAGAACACTGAAATGCTTCAAATGCTGAAGGAAACAGCAATGTCAGAGATTGATAATATTATGTTAACAGATGCCCCACTCCTCTTCCCCCCTGGGCAGTTAGCATTGGCTGCATTACGCAGATCAAATCAAGGTCATGGAGCTATTGACTTCGATAGACACCTGGACAGTATCCTCTCTCGCCAAAAGTCTGCACATACAATTTACGAGCTCTTTGAGCGTATAAATTCAATTGAATCGTGGTCAGCAATATTTGTGGTCAGTGTGACCAAGAAATTTCTGCCAAGTAATGATAACATGGGGACAAAATTTTGA

Protein sequence

MYILISSGPTRAHICSSFSQFLNPCSGSCPSTVAAPRFLSSHGRAKWILDPQELFGATLMEVDADGSLSVPDPQINSKDNALIYFKRFYLQWSVMQHNPKYVILEFDLIVYAPYRSVKGYVNDMEELFHENTEMLQMLKETAMSEIDNIMLTDAPLLFPPGQLALAALRRSNQGHGAIDFDRHLDSILSRQKSAHTIYELFERINSIESWSAIFVVSVTKKFLPSNDNMGTKF

Homology

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BLAST of Carg00866 vs. NCBI nr
Match: KAG7034365.1 (Cyclin-H1-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 472.2 bits (1214), Expect = 2.5e-129
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MYILISSGPTRAHICSSFSQFLNPCSGSCPSTVAAPRFLSSHGRAKWILDPQELFGATLM 60
           MYILISSGPTRAHICSSFSQFLNPCSGSCPSTVAAPRFLSSHGRAKWILDPQELFGATLM
Sbjct: 1   MYILISSGPTRAHICSSFSQFLNPCSGSCPSTVAAPRFLSSHGRAKWILDPQELFGATLM 60

Query: 61  EVDADGSLSVPDPQINSKDNALIYFKRFYLQWSVMQHNPKYVILEFDLIVYAPYRSVKGY 120
           EVDADGSLSVPDPQINSKDNALIYFKRFYLQWSVMQHNPKYVILEFDLIVYAPYRSVKGY
Sbjct: 61  EVDADGSLSVPDPQINSKDNALIYFKRFYLQWSVMQHNPKYVILEFDLIVYAPYRSVKGY 120

Query: 121 VNDMEELFHENTEMLQMLKETAMSEIDNIMLTDAPLLFPPGQLALAALRRSNQGHGAIDF 180
           VNDMEELFHENTEMLQMLKETAMSEIDNIMLTDAPLLFPPGQLALAALRRSNQGHGAIDF
Sbjct: 121 VNDMEELFHENTEMLQMLKETAMSEIDNIMLTDAPLLFPPGQLALAALRRSNQGHGAIDF 180

Query: 181 DRHLDSILSRQKSAHTIYELFERINSIESWSAIFVVSVTKKFLPSNDNMGTKF 234
           DRHLDSILSRQKSAHTIYELFERINSIESWSAIFVVSVTKKFLPSNDNMGTKF
Sbjct: 181 DRHLDSILSRQKSAHTIYELFERINSIESWSAIFVVSVTKKFLPSNDNMGTKF 233

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BLAST of Carg00866 vs. NCBI nr
Match: KAG6604204.1 (Cyclin-H1-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 292.0 bits (746), Expect = 4.7e-75
Identity = 173/293 (59.04%), Postives = 179/293 (61.09%), Query Frame = 0


Query: 26  SGSCPSTVAAPRFLSSHGRAKWILDPQEL-----------------FGATLMEVDADGSL 85
           SGSCPSTVAAPRFLSSHGRAKWILDPQEL                 FGATLMEVDADGSL
Sbjct: 17  SGSCPSTVAAPRFLSSHGRAKWILDPQELICRYKAANQRAFEALEKFGATLMEVDADGSL 76

Query: 86  SVPDPQINSKDN----------------------------------ALIYFKRFYLQWSV 145
           SVPDPQINSKDN                                  ALIYFKRFYLQWSV
Sbjct: 77  SVPDPQINSKDNALSIEEEQFMRVFYENKLQEVCNNFHFPHKIQTTALIYFKRFYLQWSV 136

Query: 146 MQHNPKYVILEFDLIVYAPYR----------SVKGYVNDMEELFHENTEMLQMLKETAMS 205
           MQHNPKYV+L     +YA  +           VKGYVNDMEELFHENTEMLQMLKETAMS
Sbjct: 137 MQHNPKYVML---TCIYAACKIEENHVSAEELVKGYVNDMEELFHENTEMLQMLKETAMS 196

Query: 206 EIDNIMLTDAPLLFPPGQ------------------------------------------ 214
           E+DNIMLTDAPLLFPPGQ                                          
Sbjct: 197 EVDNIMLTDAPLLFPPGQEFPLNYFRIRFMQSIHAREVRGGRILCVCARREGVGIFTLSF 256

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BLAST of Carg00866 vs. NCBI nr
Match: XP_038883649.1 (cyclin-H1-1 isoform X1 [Benincasa hispida])

HSP 1 Score: 242.3 bits (617), Expect = 4.2e-60
Identity = 146/272 (53.68%), Postives = 155/272 (56.99%), Query Frame = 0


Query: 38  FLSSHGRAKWILDPQEL-----------------FGATLMEVDADGSLSVPDPQINSKDN 97
           F +S  RAKWIL PQEL                 FGATLMEVDADGSLS P+PQINSKDN
Sbjct: 4   FQTSTQRAKWILSPQELVCRYKAANQRAIEALEKFGATLMEVDADGSLSYPEPQINSKDN 63

Query: 98  ------------------------------------------ALIYFKRFYLQWSVMQHN 157
                                                     ALIYFKRFYLQWSVMQHN
Sbjct: 64  ADKHSRPKSLSIEEDQFMRVFYENKLQEVCNNFHFPHKIQATALIYFKRFYLQWSVMQHN 123

Query: 158 PK-----------------------------------------YVILEFDLIVYAPYRSV 210
           PK                                         Y  LEFDLIVYAPYRSV
Sbjct: 124 PKNVMLTCIYAACKIEENHVSAEELGKGISQDHQIILNYEMIVYQSLEFDLIVYAPYRSV 183

[Close]

BLAST of Carg00866 vs. NCBI nr
Match: XP_023518875.1 (cyclin-H1-1 [Cucurbita pepo subsp. pepo] >XP_023518876.1 cyclin-H1-1 [Cucurbita pepo subsp. pepo] >XP_023518878.1 cyclin-H1-1 [Cucurbita pepo subsp. pepo] >XP_023518879.1 cyclin-H1-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.3 bits (599), Expect = 5.2e-58
Identity = 141/273 (51.65%), Postives = 152/273 (55.68%), Query Frame = 0


Query: 38  FLSSHGRAKWILDPQEL-----------------FGATLMEVDADGSLSVPDPQINSKDN 97
           F +S  RAKWIL P EL                 FGATLM VDADGSLS PDP INSK+N
Sbjct: 4   FQTSTQRAKWILSPHELVGRYKAANQRAIEALEKFGATLMVVDADGSLSYPDPLINSKEN 63

Query: 98  ------------------------------------------ALIYFKRFYLQWSVMQHN 157
                                                     ALIYFKRFYLQWSVMQHN
Sbjct: 64  ADKHSRPKPLSIEEEQFMRVFYENKLQEVCNNFHFPHKIQATALIYFKRFYLQWSVMQHN 123

Query: 158 PK-----------------------------------------YVILEFDLIVYAPYRSV 211
           PK                                         Y  LEFDLIVYAPYRSV
Sbjct: 124 PKNVMLTCIYAACKIEENHVSAEELGKGISQDHQIILNYEMIVYQSLEFDLIVYAPYRSV 183

[Close]

BLAST of Carg00866 vs. NCBI nr
Match: XP_022133124.1 (cyclin-H1-1 [Momordica charantia])

HSP 1 Score: 234.2 bits (596), Expect = 1.2e-57
Identity = 139/273 (50.92%), Postives = 153/273 (56.04%), Query Frame = 0


Query: 38  FLSSHGRAKWILDPQEL-----------------FGATLMEVDADGSLSVPDPQINSKDN 97
           F +S  RAKWIL PQEL                 FGATLMEVDADGSLS PDPQINSKD+
Sbjct: 4   FQTSTQRAKWILTPQELVGRYRAANQGAIGALEKFGATLMEVDADGSLSYPDPQINSKDH 63

Query: 98  ------------------------------------------ALIYFKRFYLQWSVMQHN 157
                                                     ALIYFKRFYLQWSVMQHN
Sbjct: 64  ADKHSRPKALSIEEEQFMRVFYENKLQEVCNNFHFPHKIQATALIYFKRFYLQWSVMQHN 123

Query: 158 PK-----------------------------------------YVILEFDLIVYAPYRSV 211
           PK                                         Y  LEFDLIVYAPYRSV
Sbjct: 124 PKNVMLTCIYAACKIEENHVSAEELGKGISQDHQIILNYEMIVYQSLEFDLIVYAPYRSV 183

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BLAST of Carg00866 vs. ExPASy Swiss-Prot
Match: Q8W5S1 (Cyclin-H1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCH1-1 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.4e-34
Identity = 99/272 (36.40%), Postives = 130/272 (47.79%), Query Frame = 0


Query: 38  FLSSHGRAKWILDPQEL-----------------FGATLMEVDADGSLSVPDPQINSKD- 97
           F +S  RAKWI  PQ+L                  G T +EVDA GSL+ P  ++ S D 
Sbjct: 4   FQTSTQRAKWIFTPQKLAERYKAANQRAVQMLEKCGTTQVEVDASGSLTYPKDKVGSGDQ 63

Query: 98  ---------------------------------------NALIYFKRFYLQWSVMQHNPK 157
                                                   AL YFKRFYLQWSVMQH+PK
Sbjct: 64  ADKKLKPLSADEERFMRAFYEAKVQEVCSAFAFPHKIQATALQYFKRFYLQWSVMQHHPK 123

Query: 158 YVI-----------------------------------------LEFDLIVYAPYRSVKG 209
            ++                                         LEFDLIVYAPYR+++G
Sbjct: 124 EIMLTCVYAACKIEENHVSAEEIGKGINQDHRIILKYEMAVLQSLEFDLIVYAPYRAIEG 183

[Close]

BLAST of Carg00866 vs. ExPASy Swiss-Prot
Match: Q10D80 (Cyclin-H1-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCH1-1 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-29
Identity = 73/171 (42.69%), Postives = 101/171 (59.06%), Query Frame = 0


Query: 81  ALIYFKRFYLQWSVMQHNPKYVI------------------------------------- 140
           A+IYFKRFYLQWSVM+H+PK+++                                     
Sbjct: 104 AIIYFKRFYLQWSVMEHHPKHIMLTCIYSSCKVEENHVSAEELGKGIQQDHQIILNNEMI 163

Query: 141 ----LEFDLIVYAPYRSVKGYVNDMEELFHENT---EMLQMLKETAMSEIDNIMLTDAPL 200
               L+FDLIVYAPYRS++G+V+DME+         + LQ L++TA+S++D +MLTDAPL
Sbjct: 164 VLKSLDFDLIVYAPYRSIEGFVDDMEDFCRAGNGEHQRLQDLRQTAISQVDKMMLTDAPL 223

Query: 201 LFPPGQLALAALRRSNQGHGAIDFDRHLDSILSRQKSAHTIYELFERINSI 208
           L+ PGQLALAAL +SN  H  ++F+R+L+S+ SRQ S   I +    IN I
Sbjct: 224 LYTPGQLALAALHKSNDMHKILNFERYLESVFSRQHSDCPIEQFVGSINMI 274

[Close]

BLAST of Carg00866 vs. ExPASy Swiss-Prot
Match: Q3ZBL9 (Cyclin-H OS=Bos taurus OX=9913 GN=CCNH PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.6e-07
Identity = 45/179 (25.14%), Postives = 81/179 (45.25%), Query Frame = 0


Query: 81  ALIYFKRFYLQWSVMQHNPKYVI------------------------------------- 140
           A +YFKRFYL  SVM+++P+ ++                                     
Sbjct: 83  ACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKTLEQ 142

Query: 141 -----------LEFDLIVYAPYRSVKGYVNDMEELFH--ENTEMLQMLKETAMSEIDNIM 200
                      L F LIV+ PYR  +G++ D++  +   EN E   +L++TA   ++ + 
Sbjct: 143 ILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPLLENPE---ILRKTADDFLNRVA 202

Query: 201 LTDAPLLFPPGQLALAALRRSNQGHGAIDFDRHLDSILSRQKSAHTIYELFERINSIES 210
           LTDA LL+ P Q+AL A+  S+     I  + +L   L  +++  ++ +L + + S+ +
Sbjct: 203 LTDAHLLYTPSQIALTAI-LSSASRAGITMESYLSESLMLKENRTSLSQLLDIMKSMRN 257

[Close]

BLAST of Carg00866 vs. ExPASy Swiss-Prot
Match: P51946 (Cyclin-H OS=Homo sapiens OX=9606 GN=CCNH PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06
Identity = 46/179 (25.70%), Postives = 80/179 (44.69%), Query Frame = 0


Query: 81  ALIYFKRFYLQWSVMQHNPKYVI------------------------------------- 140
           A +YFKRFYL  SVM+++P+ ++                                     
Sbjct: 83  ACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALEQ 142

Query: 141 -----------LEFDLIVYAPYRSVKGYVNDMEELFH--ENTEMLQMLKETAMSEIDNIM 200
                      L F LIV+ PYR  +G++ D++  +   EN E   +L++TA   ++ I 
Sbjct: 143 ILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPE---ILRKTADDFLNRIA 202

Query: 201 LTDAPLLFPPGQLALAALRRSNQGHGAIDFDRHLDSILSRQKSAHTIYELFERINSIES 210
           LTDA LL+ P Q+AL A+  S+     I  + +L   L  +++   + +L + + S+ +
Sbjct: 203 LTDAYLLYTPSQIALTAI-LSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRN 257

[Close]

BLAST of Carg00866 vs. ExPASy Swiss-Prot
Match: Q4R7U4 (Cyclin-H OS=Macaca fascicularis OX=9541 GN=CCNH PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06
Identity = 46/179 (25.70%), Postives = 80/179 (44.69%), Query Frame = 0


Query: 81  ALIYFKRFYLQWSVMQHNPKYVI------------------------------------- 140
           A +YFKRFYL  SVM+++P+ ++                                     
Sbjct: 83  ACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALEQ 142

Query: 141 -----------LEFDLIVYAPYRSVKGYVNDMEELFH--ENTEMLQMLKETAMSEIDNIM 200
                      L F LIV+ PYR  +G++ D++  +   EN E   +L++TA   ++ I 
Sbjct: 143 ILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPE---ILRKTADDFLNRIA 202

Query: 201 LTDAPLLFPPGQLALAALRRSNQGHGAIDFDRHLDSILSRQKSAHTIYELFERINSIES 210
           LTDA LL+ P Q+AL A+  S+     I  + +L   L  +++   + +L + + S+ +
Sbjct: 203 LTDAYLLYTPSQIALTAI-LSSASRAGITMESYLSESLMLRENRTCLSQLLDIMKSMRN 257

[Close]

BLAST of Carg00866 vs. ExPASy TrEMBL
Match: A0A6J1BV31 (cyclin-H1-1 OS=Momordica charantia OX=3673 GN=LOC111005797 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 5.6e-58
Identity = 139/273 (50.92%), Postives = 153/273 (56.04%), Query Frame = 0


Query: 38  FLSSHGRAKWILDPQEL-----------------FGATLMEVDADGSLSVPDPQINSKDN 97
           F +S  RAKWIL PQEL                 FGATLMEVDADGSLS PDPQINSKD+
Sbjct: 4   FQTSTQRAKWILTPQELVGRYRAANQGAIGALEKFGATLMEVDADGSLSYPDPQINSKDH 63

Query: 98  ------------------------------------------ALIYFKRFYLQWSVMQHN 157
                                                     ALIYFKRFYLQWSVMQHN
Sbjct: 64  ADKHSRPKALSIEEEQFMRVFYENKLQEVCNNFHFPHKIQATALIYFKRFYLQWSVMQHN 123

Query: 158 PK-----------------------------------------YVILEFDLIVYAPYRSV 211
           PK                                         Y  LEFDLIVYAPYRSV
Sbjct: 124 PKNVMLTCIYAACKIEENHVSAEELGKGISQDHQIILNYEMIVYQSLEFDLIVYAPYRSV 183

[Close]

BLAST of Carg00866 vs. ExPASy TrEMBL
Match: A0A6J1KS71 (cyclin-H1-1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497153 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 7.3e-58
Identity = 140/273 (51.28%), Postives = 152/273 (55.68%), Query Frame = 0


Query: 38  FLSSHGRAKWILDPQEL-----------------FGATLMEVDADGSLSVPDPQINSKDN 97
           F +S  RAKWIL+P EL                 FGATLM VDADGSLS PDP INSK+N
Sbjct: 4   FQTSTQRAKWILNPHELVGRYKAANQRAIEALEKFGATLMVVDADGSLSYPDPLINSKEN 63

Query: 98  ------------------------------------------ALIYFKRFYLQWSVMQHN 157
                                                     ALIYFKRFYLQWSVMQHN
Sbjct: 64  ADKHSRPKPLSIEEEQFMRVFYENKLQEVCNNFHFPHKIQATALIYFKRFYLQWSVMQHN 123

Query: 158 PK-----------------------------------------YVILEFDLIVYAPYRSV 211
           PK                                         Y  LEFDLIVYAPYRSV
Sbjct: 124 PKNVMLTCIYAACKIEENHVSAEELGKGISQDHQIILNYEMIVYQSLEFDLIVYAPYRSV 183

[Close]

BLAST of Carg00866 vs. ExPASy TrEMBL
Match: A0A5D3CP29 (Cyclin-H1-1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005130 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.6e-57
Identity = 141/272 (51.84%), Postives = 152/272 (55.88%), Query Frame = 0


Query: 38  FLSSHGRAKWILDPQEL-----------------FGATLMEVDADGSLSVPDPQINSKDN 97
           F +S  RAKWIL PQEL                 FGA+LMEVDADGSLS PDPQIN KD+
Sbjct: 4   FQTSTQRAKWILSPQELGCRYKAANQRAIEALEKFGASLMEVDADGSLSYPDPQINLKDH 63

Query: 98  ------------------------------------------ALIYFKRFYLQWSVMQHN 157
                                                     ALIYFKRFYLQWSVMQHN
Sbjct: 64  ADKHSRPKSLSIEEEQFMRVFYENKLQEVCNNFHFPHKIQATALIYFKRFYLQWSVMQHN 123

Query: 158 PK-----------------------------------------YVILEFDLIVYAPYRSV 210
           PK                                         Y  LEFDLIVYAPYRSV
Sbjct: 124 PKNVMLTCIYAACKIEENHVSAEELGKGISQDHQIILNYEMIVYQSLEFDLIVYAPYRSV 183

[Close]

BLAST of Carg00866 vs. ExPASy TrEMBL
Match: A0A6J1HF25 (cyclin-H1-1 OS=Cucurbita moschata OX=3662 GN=LOC111463583 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 2.8e-57
Identity = 139/273 (50.92%), Postives = 151/273 (55.31%), Query Frame = 0


Query: 38  FLSSHGRAKWILDPQEL-----------------FGATLMEVDADGSLSVPDPQINSKDN 97
           F +S  RAKWIL P EL                 FGATLM VDADGSLS PDP INSK+N
Sbjct: 4   FQTSTQRAKWILSPHELVGRYKAANQRAIEALEKFGATLMVVDADGSLSYPDPLINSKEN 63

Query: 98  ------------------------------------------ALIYFKRFYLQWSVMQHN 157
                                                     ALIYFKRFYLQWSVMQHN
Sbjct: 64  ADKHSRPKPLSIEEEQFMRVFYENKLQEVCNNFHFPHKIQATALIYFKRFYLQWSVMQHN 123

Query: 158 PK-----------------------------------------YVILEFDLIVYAPYRSV 211
           PK                                         Y  LEFDLIVYAPYRSV
Sbjct: 124 PKNVMLTCIYAACKIEENHVSAEELGKGISQDHQIILNYEMIVYQSLEFDLIVYAPYRSV 183

[Close]

BLAST of Carg00866 vs. ExPASy TrEMBL
Match: A0A1S3B075 (cyclin-H1-1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484743 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 3.6e-57
Identity = 140/272 (51.47%), Postives = 152/272 (55.88%), Query Frame = 0


Query: 38  FLSSHGRAKWILDPQEL-----------------FGATLMEVDADGSLSVPDPQINSKDN 97
           F +S  RAKWIL PQEL                 FGA+LMEVDADGSLS PDPQIN KD+
Sbjct: 4   FQTSTQRAKWILSPQELGCRYKAANQRAIEALEKFGASLMEVDADGSLSYPDPQINLKDH 63

Query: 98  ------------------------------------------ALIYFKRFYLQWSVMQHN 157
                                                     ALIYFKRFYLQWSVMQHN
Sbjct: 64  ADKHSRPKSLSIEEEQFMRVFYENKLQEVCNNFHFPHKIQATALIYFKRFYLQWSVMQHN 123

Query: 158 PK-----------------------------------------YVILEFDLIVYAPYRSV 210
           PK                                         Y  LEFDLIVYAPYRSV
Sbjct: 124 PKNVMLTCIYAACKIEENHVSAEELGKGISQDHQIILNYEMIVYQSLEFDLIVYAPYRSV 183

[Close]

BLAST of Carg00866 vs. TAIR 10
Match: AT5G27620.1 (cyclin H;1 )

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-35
Identity = 99/272 (36.40%), Postives = 130/272 (47.79%), Query Frame = 0


Query: 38  FLSSHGRAKWILDPQEL-----------------FGATLMEVDADGSLSVPDPQINSKD- 97
           F +S  RAKWI  PQ+L                  G T +EVDA GSL+ P  ++ S D 
Sbjct: 4   FQTSTQRAKWIFTPQKLAERYKAANQRAVQMLEKCGTTQVEVDASGSLTYPKDKVGSGDQ 63

Query: 98  ---------------------------------------NALIYFKRFYLQWSVMQHNPK 157
                                                   AL YFKRFYLQWSVMQH+PK
Sbjct: 64  ADKKLKPLSADEERFMRAFYEAKVQEVCSAFAFPHKIQATALQYFKRFYLQWSVMQHHPK 123

Query: 158 YVI-----------------------------------------LEFDLIVYAPYRSVKG 209
            ++                                         LEFDLIVYAPYR+++G
Sbjct: 124 EIMLTCVYAACKIEENHVSAEEIGKGINQDHRIILKYEMAVLQSLEFDLIVYAPYRAIEG 183

The following BLAST results are available for this feature:

BLAST of Carg00866 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034365.1	2.5e-129	100.00	Cyclin-H1-1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6604204.1	4.7e-75	59.04	Cyclin-H1-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038883649.1	4.2e-60	53.68	cyclin-H1-1 isoform X1 [Benincasa hispida]	[more]
XP_023518875.1	5.2e-58	51.65	cyclin-H1-1 [Cucurbita pepo subsp. pepo] >XP_023518876.1 cyclin-H1-1 [Cucurbita ...	[more]
XP_022133124.1	1.2e-57	50.92	cyclin-H1-1 [Momordica charantia]	[more]

BLAST of Carg00866 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W5S1	2.4e-34	36.40	Cyclin-H1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCH1-1 PE=1 SV=1	[more]
Q10D80	1.4e-29	42.69	Cyclin-H1-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCH1-1 PE=1 SV=1	[more]
Q3ZBL9	9.6e-07	25.14	Cyclin-H OS=Bos taurus OX=9913 GN=CCNH PE=2 SV=1	[more]
P51946	1.6e-06	25.70	Cyclin-H OS=Homo sapiens OX=9606 GN=CCNH PE=1 SV=1	[more]
Q4R7U4	1.6e-06	25.70	Cyclin-H OS=Macaca fascicularis OX=9541 GN=CCNH PE=2 SV=1	[more]

BLAST of Carg00866 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BV31	5.6e-58	50.92	cyclin-H1-1 OS=Momordica charantia OX=3673 GN=LOC111005797 PE=3 SV=1	[more]
A0A6J1KS71	7.3e-58	51.28	cyclin-H1-1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497153 PE=3 SV=1	[more]
A0A5D3CP29	1.6e-57	51.84	Cyclin-H1-1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A6J1HF25	2.8e-57	50.92	cyclin-H1-1 OS=Cucurbita moschata OX=3662 GN=LOC111463583 PE=3 SV=1	[more]
A0A1S3B075	3.6e-57	51.47	cyclin-H1-1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484743 PE=3 SV=1	[more]

BLAST of Carg00866 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27620.1	1.7e-35	36.40	cyclin H;1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031658	Cyclin, C-terminal domain 2	PFAM	PF16899	Cyclin_C_2	coord: 113..205 e-value: 2.9E-10 score: 40.5
None	No IPR available	GENE3D	1.10.472.10		coord: 111..212 e-value: 5.6E-25 score: 89.4
None	No IPR available	PANTHER	PTHR10026:SF8	CYCLIN-H	coord: 104..199 coord: 81..104
IPR043198	Cyclin/Cyclin-like subunit Ssn8	PANTHER	PTHR10026	CYCLIN	coord: 104..199 coord: 81..104
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 113..211

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00866-RA	Carg00866-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
biological_process	GO:0051301	cell division
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity