Carg00781 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00781
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCytochrome P450
LocationCarg_Chr03: 6705258 .. 6706740 (+)
RNA-Seq ExpressionCarg00781
SyntenyCarg00781
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTATCTTGAGGCTTCACCAGTGTGTGTATGATGTATATCTGATCTTCATGTTCGATGCTTATTGCTCTTGTTTTCATTTGTTTTAAACCTGTGTTATAAATATCCATGATTTCTCCGATGAAAACTTCATGAGATTAAGGGTGTTAAAATTACTTATACAATTCCTCCATTGCTCTTTGCTTAGATAGGCTGGAATTTTCATCGCTAAAGTCGACACATTCCAAACAACCTACAGAGATCAATACTCCTGAGAGGGATTATGACATGAATTTGACAATAACAAATCACTAAAAAGATCATAATTTTATTACTTCAAAAAGCTCTAATGTTGTCTCTACATATAATAATCTAGGCCGGATAACCGTATGGTAGTTCAGAGACGGAGAGATTCAGAGCATCCAAGTGCCTGAAACCGTACTTTCTAAGCACCTGATTATCAGCAAAGTTCAAAGCTTTAAGCATTCCATCCCAACAGGAACTACCAGAATACATCTGATTGTGATTCCCACTGCAAGGCTGACACCCCGTGAAGTGGGTGATAAAAGGCCTTCTCCAACCCCCTTTCCCACTTCCTGCATCTCTCAAATACTTCTCCCTAAACGCACCGTATTGCTCGCTCACCTTCTCTGCGTGCCGCCGCCGCAGCTCCCCAGCCTCTCTCTCCATCTCCGTGTACCTCTCGGTGATGTTATCAAAAGTTCCCACAATCTCCGCCCAGTACCCTTCGAAGTAATACTCCCCTTCTAAATAAATCTTGTCCCCCCATTTCTCTTTCTCCTTGTACAGTAGATAAACCAGGCCCGTCTGATCGTCCGACTCTGGGAACTGCTTGTCTGGAATCGTCGATTTGAGGACCTGGCCCCACTTCTCGTAATTTGGGGTTTGTGGGCCCATGCTGGCCCACACTTCCATGAAGTCCATGGACCACTGGCAGTTTCTGATCAGAAACACGCCGGCGTTGAGCGCCGTCCAGCTTTTCCGATCGTAAATCAGGTGGGCCCAGCCGTGAGCGACAAAGTTGTGGTTTTTGTATCGATCCAGTGGGAGTTTGAATTCCATGTCGGTGAACAGAGCGTCCGAGTCCACCCACCAAATCCACTCGGCCTCTGGGTGAGCTATCATCGCAGCTCGAACCACCGGCAGCTTCGCCCAGTACGAGAACATTTCCGGGTGCAGCAGTGCATTGTTGTAGAATATATCGTAGCCGTGGATTCGGCAGTAGTCCACTTTGTTCTTGAAGAATCTCAGAAGCAAGTGATCGCCAATGGGGTTCGGGCACGGCGCAGGCTGCGACGCCGAGAGAAGAAGCACCCTCTCGCCGGCTCCGGTGGCGAACGAAGGGTGCAGTTTCAGCCAGTGACGGCGCTTGTCGTCCCATTTCTCGATCCGCTTCTCTATGGAGTAGCTGAGTTTGGGGTCATCGTAAAAGGTAATATCCGGTGGGTCGTAGGGCAGAGATGGATGGCTTTGAGAATTTAG

mRNA sequence

ATGTCTATCTTGAGGCTTCACCAAGACGGAGAGATTCAGAGCATCCAAGTGCCTGAAACCGTACTTTCTAAGCACCTGATTATCAGCAAAGTTCAAAGCTTTAAGCATTCCATCCCAACAGGAACTACCAGAATACATCTGATTGTGATTCCCACTGCAAGGCTGACACCCCGTGAAGTGGGTGATAAAAGGCCTTCTCCAACCCCCTTTCCCACTTCCTGCATCTCTCAAATACTTCTCCCTAAACGCACCGTATTGCTCGCTCACCTTCTCTGCGTGCCGCCGCCGCAGCTCCCCAGCCTCTCTCTCCATCTCCGTGTACCTCTCGAATCTCAGAAGCAAGTGATCGCCAATGGGGTTCGGGCACGGCGCAGGCTGCGACGCCGAGAGAAGAAGCACCCTCTCGCCGGCTCCGGTGGCGAACGAAGGGTGCAGTTTCAGCCAGTGACGGCGCTTGTCGTCCCATTTCTCGATCCGCTTCTCTATGGAGTAGCTGAGTTTGGGGTCATCGTAAAAGGTAATATCCGGTGGGTCGTAGGGCAGAGATGGATGGCTTTGAGAATTTAG

Coding sequence (CDS)

ATGTCTATCTTGAGGCTTCACCAAGACGGAGAGATTCAGAGCATCCAAGTGCCTGAAACCGTACTTTCTAAGCACCTGATTATCAGCAAAGTTCAAAGCTTTAAGCATTCCATCCCAACAGGAACTACCAGAATACATCTGATTGTGATTCCCACTGCAAGGCTGACACCCCGTGAAGTGGGTGATAAAAGGCCTTCTCCAACCCCCTTTCCCACTTCCTGCATCTCTCAAATACTTCTCCCTAAACGCACCGTATTGCTCGCTCACCTTCTCTGCGTGCCGCCGCCGCAGCTCCCCAGCCTCTCTCTCCATCTCCGTGTACCTCTCGAATCTCAGAAGCAAGTGATCGCCAATGGGGTTCGGGCACGGCGCAGGCTGCGACGCCGAGAGAAGAAGCACCCTCTCGCCGGCTCCGGTGGCGAACGAAGGGTGCAGTTTCAGCCAGTGACGGCGCTTGTCGTCCCATTTCTCGATCCGCTTCTCTATGGAGTAGCTGAGTTTGGGGTCATCGTAAAAGGTAATATCCGGTGGGTCGTAGGGCAGAGATGGATGGCTTTGAGAATTTAG

Protein sequence

MSILRLHQDGEIQSIQVPETVLSKHLIISKVQSFKHSIPTGTTRIHLIVIPTARLTPREVGDKRPSPTPFPTSCISQILLPKRTVLLAHLLCVPPPQLPSLSLHLRVPLESQKQVIANGVRARRRLRRREKKHPLAGSGGERRVQFQPVTALVVPFLDPLLYGVAEFGVIVKGNIRWVVGQRWMALRI
Homology
[Close]
BLAST of Carg00781 vs. NCBI nr
Match: KAG7034281.1 (hypothetical protein SDJN02_04008, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 367.9 bits (943), Expect = 5.4e-98
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0 

Query: 1   MSILRLHQDGEIQSIQVPETVLSKHLIISKVQSFKHSIPTGTTRIHLIVIPTARLTPREV 60
           MSILRLHQDGEIQSIQVPETVLSKHLIISKVQSFKHSIPTGTTRIHLIVIPTARLTPREV
Sbjct: 1   MSILRLHQDGEIQSIQVPETVLSKHLIISKVQSFKHSIPTGTTRIHLIVIPTARLTPREV 60

Query: 61  GDKRPSPTPFPTSCISQILLPKRTVLLAHLLCVPPPQLPSLSLHLRVPLESQKQVIANGV 120
           GDKRPSPTPFPTSCISQILLPKRTVLLAHLLCVPPPQLPSLSLHLRVPLESQKQVIANGV
Sbjct: 61  GDKRPSPTPFPTSCISQILLPKRTVLLAHLLCVPPPQLPSLSLHLRVPLESQKQVIANGV 120

Query: 121 RARRRLRRREKKHPLAGSGGERRVQFQPVTALVVPFLDPLLYGVAEFGVIVKGNIRWVVG 180
           RARRRLRRREKKHPLAGSGGERRVQFQPVTALVVPFLDPLLYGVAEFGVIVKGNIRWVVG
Sbjct: 121 RARRRLRRREKKHPLAGSGGERRVQFQPVTALVVPFLDPLLYGVAEFGVIVKGNIRWVVG 180

Query: 181 QRWMALRI 189
           QRWMALRI
Sbjct: 181 QRWMALRI 188

[Close]
BLAST of Carg00781 vs. NCBI nr
Match: PQM41101.1 (hypothetical protein Pyn_07319 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 74.7 bits (182), Expect = 9.4e-10
Identity = 43/83 (51.81%), Postives = 51/83 (61.45%), Query Frame = 0 

Query: 26  LIISKVQSFKHSIPTGTTRIHLIVIPTARLTPREVGDKRPSPTPFPTSCISQILLPKRTV 85
           L I  VQS  H +PT    ++ +V P ARLTP EV DKRPS    P + I QILL  R++
Sbjct: 10  LTICIVQSLLHPLPTSFPSVNRVVFPAARLTPGEVRDKRPSEFILPIALILQILLSDRSI 69

Query: 86  LLAHLLCVPPPQLPSLSLHLRVP 109
             AHLLCV PPQ   LS+ L VP
Sbjct: 70  EQAHLLCVSPPQHYHLSIDLHVP 92

[Close]
BLAST of Carg00781 vs. NCBI nr
Match: PQM37721.1 (hypothetical protein Pyn_13778 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-09
Identity = 44/86 (51.16%), Postives = 51/86 (59.30%), Query Frame = 0 

Query: 23  SKHLIISKVQSFKHSIPTGTTRIHLIVIPTARLTPREVGDKRPSPTPFPTSCISQILLPK 82
           +K L I  VQS  H  PT    +  +V P ARLTP EV DKRPS    P + I QILL  
Sbjct: 7   AKSLTICIVQSLLHPHPTSFPSVSRVVFPAARLTPSEVRDKRPSEFILPIALILQILLSD 66

Query: 83  RTVLLAHLLCVPPPQLPSLSLHLRVP 109
           R++  AHLLCV PPQ   LS+ L VP
Sbjct: 67  RSIEQAHLLCVSPPQHYHLSIDLHVP 92

[Close]
BLAST of Carg00781 vs. NCBI nr
Match: GER30988.1 (cytochrome P450 [Striga asiatica])

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-07
Identity = 42/96 (43.75%), Postives = 54/96 (56.25%), Query Frame = 0 

Query: 12  IQSIQVPETVLSKHLIISKVQSFKHSIPTGTTRIHLIVIPTARLTPREV---GDKRPSPT 71
           I+ ++V + V ++HLII K Q   H +    +R+HLIV+PTARL  REV   G     P 
Sbjct: 14  IKHVRVRKPVAAEHLIIRKGQRPLHRVKARLSRVHLIVVPTARLASREVSYEGSLPAPPP 73

Query: 72  PFPTSCISQILLPKRTVLLAHLLCVPPPQLPSLSLH 105
           PF      Q L P+ T+ L HLL  PPPQ    SLH
Sbjct: 74  PFSGPLHLQPLFPRLTIRLTHLLRPPPPQPRLFSLH 109

[Close]
BLAST of Carg00781 vs. ExPASy TrEMBL
Match: A0A314UUM4 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_07319 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.6e-10
Identity = 43/83 (51.81%), Postives = 51/83 (61.45%), Query Frame = 0 

Query: 26  LIISKVQSFKHSIPTGTTRIHLIVIPTARLTPREVGDKRPSPTPFPTSCISQILLPKRTV 85
           L I  VQS  H +PT    ++ +V P ARLTP EV DKRPS    P + I QILL  R++
Sbjct: 10  LTICIVQSLLHPLPTSFPSVNRVVFPAARLTPGEVRDKRPSEFILPIALILQILLSDRSI 69

Query: 86  LLAHLLCVPPPQLPSLSLHLRVP 109
             AHLLCV PPQ   LS+ L VP
Sbjct: 70  EQAHLLCVSPPQHYHLSIDLHVP 92

[Close]
BLAST of Carg00781 vs. ExPASy TrEMBL
Match: A0A314UK48 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_13778 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.0e-10
Identity = 44/86 (51.16%), Postives = 51/86 (59.30%), Query Frame = 0 

Query: 23  SKHLIISKVQSFKHSIPTGTTRIHLIVIPTARLTPREVGDKRPSPTPFPTSCISQILLPK 82
           +K L I  VQS  H  PT    +  +V P ARLTP EV DKRPS    P + I QILL  
Sbjct: 7   AKSLTICIVQSLLHPHPTSFPSVSRVVFPAARLTPSEVRDKRPSEFILPIALILQILLSD 66

Query: 83  RTVLLAHLLCVPPPQLPSLSLHLRVP 109
           R++  AHLLCV PPQ   LS+ L VP
Sbjct: 67  RSIEQAHLLCVSPPQHYHLSIDLHVP 92

[Close]
BLAST of Carg00781 vs. ExPASy TrEMBL
Match: A0A5A7PEJ2 (Cytochrome P450 OS=Striga asiatica OX=4170 GN=STAS_06957 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.3e-08
Identity = 42/96 (43.75%), Postives = 54/96 (56.25%), Query Frame = 0 

Query: 12  IQSIQVPETVLSKHLIISKVQSFKHSIPTGTTRIHLIVIPTARLTPREV---GDKRPSPT 71
           I+ ++V + V ++HLII K Q   H +    +R+HLIV+PTARL  REV   G     P 
Sbjct: 14  IKHVRVRKPVAAEHLIIRKGQRPLHRVKARLSRVHLIVVPTARLASREVSYEGSLPAPPP 73

Query: 72  PFPTSCISQILLPKRTVLLAHLLCVPPPQLPSLSLH 105
           PF      Q L P+ T+ L HLL  PPPQ    SLH
Sbjct: 74  PFSGPLHLQPLFPRLTIRLTHLLRPPPPQPRLFSLH 109

The following BLAST results are available for this feature:
BLAST of Carg00781 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034281.15.4e-98100.00hypothetical protein SDJN02_04008, partial [Cucurbita argyrosperma subsp. argyro... [more]
PQM41101.19.4e-1051.81hypothetical protein Pyn_07319 [Prunus yedoensis var. nudiflora][more]
PQM37721.11.2e-0951.16hypothetical protein Pyn_13778 [Prunus yedoensis var. nudiflora][more]
GER30988.11.5e-0743.75cytochrome P450 [Striga asiatica][more]
BLAST of Carg00781 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00781 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A314UUM44.6e-1051.81Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_073... [more]
A0A314UK486.0e-1051.16Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_137... [more]
A0A5A7PEJ27.3e-0843.75Cytochrome P450 OS=Striga asiatica OX=4170 GN=STAS_06957 PE=4 SV=1[more]
BLAST of Carg00781 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00781-RACarg00781-RAmRNA