Carg00729 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00729
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr03: 6447072 .. 6447610 (+)
RNA-Seq ExpressionCarg00729
SyntenyCarg00729
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATTTCACAACCTCATCCTCAACCCTTTAAGGCAAAGTTTATAGCAGCTGGAATTTTGCAGAGGTTGGAGCTTTTCACTTCCTTTCACGCCTCATTGGTGGCTTTCCATATGTCTGAAAAACTAACCCTAACCGGTAAGTTTACGTTTAAATTCCTCATTCACTTTAGTTTCATTTCCAAACATTTTTCACTCATTTTGATCCTGCGCAGATTTTCTTTTTCCCTCTTTATTTCAGCTCATTCTTCTTTTCGATCTGTGACTACGACTCTTTCTTCCTTGTTCTTGTCGATCTTCCATCTCTGCAACTGCGATTCTTAAAACTCCCTGTTCTTCATTCCTCTTCTATTAGTTTCCAATTCTGGCTCGAATCCTTCTTTTGTTCACAGGTTAGTTCGGCTCTTTTTACTGTTTGTTTTCACGAAACTAGAAGTTTTTCTAAGCGCAACTGTTTTTATGTGAACTCTTCTTATTTTCTCTCCCTCTTCTCAGTGTTTTCCATATCAGAAGCAAGGCTAGATTTAGAGATTGAGTAG

mRNA sequence

ATGGGTATTTCACAACCTCATCCTCAACCCTTTAAGGCAAAGTTTATAGCAGCTGGAATTTTGCAGAGGTTGGAGCTTTTCACTTCCTTTCACGCCTCATTGGTGGCTTTCCATATGTCTGAAAAACTAACCCTAACCGTGTTTTCCATATCAGAAGCAAGGCTAGATTTAGAGATTGAGTAG

Coding sequence (CDS)

ATGGGTATTTCACAACCTCATCCTCAACCCTTTAAGGCAAAGTTTATAGCAGCTGGAATTTTGCAGAGGTTGGAGCTTTTCACTTCCTTTCACGCCTCATTGGTGGCTTTCCATATGTCTGAAAAACTAACCCTAACCGTGTTTTCCATATCAGAAGCAAGGCTAGATTTAGAGATTGAGTAG

Protein sequence

MGISQPHPQPFKAKFIAAGILQRLELFTSFHASLVAFHMSEKLTLTVFSISEARLDLEIE
Homology
[Close]
BLAST of Carg00729 vs. NCBI nr
Match: KAG7034230.1 (hypothetical protein SDJN02_03957, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.1 bits (292), Expect = 5.3e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  MGISQPHPQPFKAKFIAAGILQRLELFTSFHASLVAFHMSEKLTLTVFSISEARLDLEIE 60
          MGISQPHPQPFKAKFIAAGILQRLELFTSFHASLVAFHMSEKLTLTVFSISEARLDLEIE
Sbjct: 1  MGISQPHPQPFKAKFIAAGILQRLELFTSFHASLVAFHMSEKLTLTVFSISEARLDLEIE 60

[Close]
BLAST of Carg00729 vs. NCBI nr
Match: KAG6604062.1 (hypothetical protein SDJN03_04671, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.4 bits (233), Expect = 3.7e-16
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 0 

Query: 1  MGISQPHPQPFKAKFIAAGILQRLELFTSFHASLVAFHMSEKLTLTVFS 50
          MGISQPHPQPFKAKFIAAGILQRLELFTSFHASLVAFHMSEKLTLT  S
Sbjct: 1  MGISQPHPQPFKAKFIAAGILQRLELFTSFHASLVAFHMSEKLTLTAHS 49

The following BLAST results are available for this feature:
BLAST of Carg00729 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034230.15.3e-23100.00hypothetical protein SDJN02_03957, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6604062.13.7e-1695.92hypothetical protein SDJN03_04671, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg00729 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00729 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00729 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00729-RACarg00729-RAmRNA