Carg00681 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00681
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Peptidylprolyl isomerase
Location	Carg_Chr03: 6245353 .. 6246017 (-)
RNA-Seq Expression	Carg00681
Synteny	Carg00681

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTACTTGGCATCACAGCTGCCATAGCCACCTTCATTTCAACCTCAAAGGCCGAATAGCACAATCTGATCATACTAAAATGGCAACCCCATGAGCCCAAGCTTCCCAAATTTTCAGCCCCAAATAATCTTCCGCTATTAAACCCACTCCTTCTTCTTCTTCTGTTTCTTGCTGCGTCGGTTATGGCTCTGTCGCCCTTGGATGCCAACGCTACGAGAATTGAATACTATGCCACTGTTGGAGAACCCCTTTGCGAGTTCCAACTATGTGCCTTCCGGGCTTGGCTATTGCTTCATCGCCATGGGATCCGATGAGGAAGTTCCTTATGGTGAGCTTAGCAATGTCAGTTCCAAGTAATTTCCCATTTTAGTTTTCTTCTCATGATCAAAATTTTCAACCATTGCCTTATATGACTGCTTGTTTCTATCCAACTTCTCTTGCAATGCTTGAAATTCCCTCATATGAATCATTATATGATGTGTTGCAAGTTGCTAATGAATCGTTTAATTTTTCCCCCTCCACGCCCAAAGGATTTTATGAATTGTTTTTGGCTTATATTACCTTTCAAATACAGGTTCACTAAACTGCAAGGTTTGCTGATAGGATAGTGTTTGACAGCAGCTATAAGCGTGCTAGACCTCTCACCTTGCGTATTGGTGTTGGCAAG

mRNA sequence

CTACTTGGCATCACAGCTGCCATAGCCACCTTCATTTCAACCTCAAAGGCCGAATAGCACAATCTGATCATACTAAAATGGCAACCCCATGAGCCCAAGCTTCCCAAATTTTCAGCCCCAAATAATCTTCCGCTATTAAACCCACTCCTTCTTCTTCTTCTGTTTCTTGCTGCGTCGGTTATGGCTCTGTCGCCCTTGGATGCCAACGCTACGAGAATTGAATACTATGCCACTGTTGGAGAACCCCTTTGCGAGTTCCAACTATGTGCCTTCCGGGCTTGGCTATTGCTTCATCGCCATGGGATCCGATGAGGAAGTTCCTTATGTGTTTGACAGCAGCTATAAGCGTGCTAGACCTCTCACCTTGCGTATTGGTGTTGGCAAG

Coding sequence (CDS)

ATGCCAACGCTACGAGAATTGAATACTATGCCACTGTTGGAGAACCCCTTTGCGAGTTCCAACTATGTGCCTTCCGGGCTTGGCTATTGCTTCATCGCCATGGGATCCGATGAGGAAGTTCCTTATGTGTTTGACAGCAGCTATAAGCGTGCTAGACCTCTCACCTTGCGTATTGGTGTTGGCAAG

Protein sequence

MPTLRELNTMPLLENPFASSNYVPSGLGYCFIAMGSDEEVPYVFDSSYKRARPLTLRIGVGK

Homology

[Close]

BLAST of Carg00681 vs. NCBI nr
Match: KAG7034182.1 (Photosynthetic NDH subunit of lumenal location 4, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.1 bits (331), Expect = 1.6e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MPTLRELNTMPLLENPFASSNYVPSGLGYCFIAMGSDEEVPYVFDSSYKRARPLTLRIGV 60
          MPTLRELNTMPLLENPFASSNYVPSGLGYCFIAMGSDEEVPYVFDSSYKRARPLTLRIGV
Sbjct: 1  MPTLRELNTMPLLENPFASSNYVPSGLGYCFIAMGSDEEVPYVFDSSYKRARPLTLRIGV 60

Query: 61 GK 63
          GK
Sbjct: 61 GK 62

[Close]

BLAST of Carg00681 vs. NCBI nr
Match: XP_008440633.1 (PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Cucumis melo] >XP_008440634.1 PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Cucumis melo] >XP_008440635.1 PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Cucumis melo] >KAA0036279.1 photosynthetic NDH subunit of lumenal location 4 [Cucumis melo var. makuwa] >TYK12673.1 photosynthetic NDH subunit of lumenal location 4 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-10
Identity = 39/63 (61.90%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 16  PFASSNYVPSGLGYCFIAMGSDEEVPY----------------VFDSSYKRARPLTLRIG 63
           P    NYVPSGLGYC IA+GS EEVPY                VFDSSYKRARPLT+RIG
Sbjct: 79  PLCEFNYVPSGLGYCDIAVGSGEEVPYGELINVHYTARFSDGIVFDSSYKRARPLTMRIG 138

[Close]

BLAST of Carg00681 vs. NCBI nr
Match: XP_022133129.1 (photosynthetic NDH subunit of lumenal location 4, chloroplastic [Momordica charantia])

HSP 1 Score: 75.1 bits (183), Expect = 2.4e-10
Identity = 38/64 (59.38%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 15  NPFASSNYVPSGLGYCFIAMGSDEEVPY----------------VFDSSYKRARPLTLRI 63
           +P    NYVPSGLGYC IA+GS E+VPY                VFDSSYKRARPLT+RI
Sbjct: 79  DPLCEFNYVPSGLGYCDIALGSGEKVPYGELINVHYTARFADGIVFDSSYKRARPLTMRI 138

[Close]

BLAST of Carg00681 vs. NCBI nr
Match: XP_038882610.1 (photosynthetic NDH subunit of lumenal location 4, chloroplastic [Benincasa hispida] >XP_038882611.1 photosynthetic NDH subunit of lumenal location 4, chloroplastic [Benincasa hispida] >XP_038882612.1 photosynthetic NDH subunit of lumenal location 4, chloroplastic [Benincasa hispida] >XP_038882613.1 photosynthetic NDH subunit of lumenal location 4, chloroplastic [Benincasa hispida])

HSP 1 Score: 74.3 bits (181), Expect = 4.1e-10
Identity = 38/63 (60.32%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 16  PFASSNYVPSGLGYCFIAMGSDEEVPY----------------VFDSSYKRARPLTLRIG 63
           P    NY PSGLGYC IA+GS EEVPY                VFDSSYKRARPLT+RIG
Sbjct: 77  PLCEFNYAPSGLGYCDIAVGSGEEVPYGELINVHYTARFADGIVFDSSYKRARPLTMRIG 136

[Close]

BLAST of Carg00681 vs. NCBI nr
Match: KAG6604018.1 (hypothetical protein SDJN03_04627, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.3 bits (181), Expect = 4.1e-10
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 10 MPLLENPFASSNYVPSGLGYCFIAMGSDEEVPY 43
          MPLLENPFASSNYVPSGLGYCFIAMGSDEEVPY
Sbjct: 1  MPLLENPFASSNYVPSGLGYCFIAMGSDEEVPY 33

[Close]

BLAST of Carg00681 vs. ExPASy Swiss-Prot
Match: Q9SCY3 (Photosynthetic NDH subunit of lumenal location 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL4 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.6e-07
Identity = 28/64 (43.75%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 15  NPFASSNYVPSGLGYCFIAMGSDEEVP----------------YVFDSSYKRARPLTLRI 63
           +P    +Y  SGLG+C + +G  +E P                 +FDSSYKRARPLT+RI
Sbjct: 84  DPLCEYSYAKSGLGFCDLDVGFGDEAPRGVLVNIHYTARFADGTLFDSSYKRARPLTMRI 143

[Close]

BLAST of Carg00681 vs. ExPASy TrEMBL
Match: A0A1S3B1J6 (Peptidylprolyl isomerase OS=Cucumis melo OX=3656 GN=LOC103484993 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.8e-11
Identity = 39/63 (61.90%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 16  PFASSNYVPSGLGYCFIAMGSDEEVPY----------------VFDSSYKRARPLTLRIG 63
           P    NYVPSGLGYC IA+GS EEVPY                VFDSSYKRARPLT+RIG
Sbjct: 79  PLCEFNYVPSGLGYCDIAVGSGEEVPYGELINVHYTARFSDGIVFDSSYKRARPLTMRIG 138

[Close]

BLAST of Carg00681 vs. ExPASy TrEMBL
Match: A0A5A7T4H4 (Peptidylprolyl isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002610 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.8e-11
Identity = 39/63 (61.90%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 16  PFASSNYVPSGLGYCFIAMGSDEEVPY----------------VFDSSYKRARPLTLRIG 63
           P    NYVPSGLGYC IA+GS EEVPY                VFDSSYKRARPLT+RIG
Sbjct: 79  PLCEFNYVPSGLGYCDIAVGSGEEVPYGELINVHYTARFSDGIVFDSSYKRARPLTMRIG 138

[Close]

BLAST of Carg00681 vs. ExPASy TrEMBL
Match: A0A6J1BV36 (Peptidylprolyl isomerase OS=Momordica charantia OX=3673 GN=LOC111005803 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-10
Identity = 38/64 (59.38%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 15  NPFASSNYVPSGLGYCFIAMGSDEEVPY----------------VFDSSYKRARPLTLRI 63
           +P    NYVPSGLGYC IA+GS E+VPY                VFDSSYKRARPLT+RI
Sbjct: 79  DPLCEFNYVPSGLGYCDIALGSGEKVPYGELINVHYTARFADGIVFDSSYKRARPLTMRI 138

[Close]

BLAST of Carg00681 vs. ExPASy TrEMBL
Match: A0A6J1KSN7 (Peptidylprolyl isomerase OS=Cucurbita maxima OX=3661 GN=LOC111497240 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.7e-10
Identity = 37/63 (58.73%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 16  PFASSNYVPSGLGYCFIAMGSDEEVPY----------------VFDSSYKRARPLTLRIG 63
           P     YVPSGLGYC +A+GS EEVPY                VFDSSYKRARPLT+RIG
Sbjct: 82  PLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARFADGIVFDSSYKRARPLTMRIG 141

[Close]

BLAST of Carg00681 vs. ExPASy TrEMBL
Match: A0A6J1HHY0 (Peptidylprolyl isomerase OS=Cucurbita moschata OX=3662 GN=LOC111463138 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.7e-10
Identity = 37/63 (58.73%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 16  PFASSNYVPSGLGYCFIAMGSDEEVPY----------------VFDSSYKRARPLTLRIG 63
           P     YVPSGLGYC +A+GS EEVPY                VFDSSYKRARPLT+RIG
Sbjct: 79  PLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARFADGIVFDSSYKRARPLTMRIG 138

[Close]

BLAST of Carg00681 vs. TAIR 10
Match: AT4G39710.1 (FK506-binding protein 16-2 )

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-08
Identity = 28/64 (43.75%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 15  NPFASSNYVPSGLGYCFIAMGSDEEVP----------------YVFDSSYKRARPLTLRI 63
           +P    +Y  SGLG+C + +G  +E P                 +FDSSYKRARPLT+RI
Sbjct: 84  DPLCEYSYAKSGLGFCDLDVGFGDEAPRGVLVNIHYTARFADGTLFDSSYKRARPLTMRI 143

[Close]

BLAST of Carg00681 vs. TAIR 10
Match: AT4G39710.2 (FK506-binding protein 16-2 )

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-08
Identity = 28/64 (43.75%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 15  NPFASSNYVPSGLGYCFIAMGSDEEVP----------------YVFDSSYKRARPLTLRI 63
           +P    +Y  SGLG+C + +G  +E P                 +FDSSYKRARPLT+RI
Sbjct: 84  DPLCEYSYAKSGLGFCDLDVGFGDEAPRGVLVNIHYTARFADGTLFDSSYKRARPLTMRI 143

[Close]

BLAST of Carg00681 vs. TAIR 10
Match: AT5G45680.1 (FK506-binding protein 13 )

HSP 1 Score: 41.2 bits (95), Expect = 3.5e-04
Identity = 25/71 (35.21%), Postives = 30/71 (42.25%), Query Frame = 0


Query: 8   NTMPLLENPFASSNYVPSGLGYCFIAMGSDEEV----------------PYVFDSSYKRA 63
           N   L E      +  PSGL +C   +G   E                   VFDSSY R 
Sbjct: 74  NVSALAETTSCEFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSSYNRG 133

The following BLAST results are available for this feature:

BLAST of Carg00681 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034182.1	1.6e-27	100.00	Photosynthetic NDH subunit of lumenal location 4, chloroplastic, partial [Cucurb...	[more]
XP_008440633.1	1.4e-10	61.90	PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Cucu...	[more]
XP_022133129.1	2.4e-10	59.38	photosynthetic NDH subunit of lumenal location 4, chloroplastic [Momordica chara...	[more]
XP_038882610.1	4.1e-10	60.32	photosynthetic NDH subunit of lumenal location 4, chloroplastic [Benincasa hispi...	[more]
KAG6604018.1	4.1e-10	100.00	hypothetical protein SDJN03_04627, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg00681 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SCY3	2.6e-07	43.75	Photosynthetic NDH subunit of lumenal location 4, chloroplastic OS=Arabidopsis t...	[more]

BLAST of Carg00681 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B1J6	6.8e-11	61.90	Peptidylprolyl isomerase OS=Cucumis melo OX=3656 GN=LOC103484993 PE=4 SV=1	[more]
A0A5A7T4H4	6.8e-11	61.90	Peptidylprolyl isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A6J1BV36	1.2e-10	59.38	Peptidylprolyl isomerase OS=Momordica charantia OX=3673 GN=LOC111005803 PE=4 SV=...	[more]
A0A6J1KSN7	5.7e-10	58.73	Peptidylprolyl isomerase OS=Cucurbita maxima OX=3661 GN=LOC111497240 PE=4 SV=1	[more]
A0A6J1HHY0	5.7e-10	58.73	Peptidylprolyl isomerase OS=Cucurbita moschata OX=3662 GN=LOC111463138 PE=4 SV=1	[more]

BLAST of Carg00681 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39710.1	1.8e-08	43.75	FK506-binding protein 16-2	[more]
AT4G39710.2	1.8e-08	43.75	FK506-binding protein 16-2	[more]
AT5G45680.1	3.5e-04	35.21	FK506-binding protein 13	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00681-RA	Carg00681-RA	mRNA