Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAGGCCCTGGCCAGCGACATGTACGCCTGCCGTTCTATTATTCATTTCTGTTAACACGCCCCATTGTAGTCTGTTAGAAATTATAAATAATAAATCCTTATCACTACTAGCCATCAAGTTTTAAAATTGTAAAAAGAAACGAACCTGATTAATTGCATGGTATGACTCGCAATTTGACTTCTTAAATCGTATAAACTTGGCTTATAGAAAATTTTTGTCTTGTTTTTAGCATTATTGTTTGTTGGTTTCATTAAAATATGTTGCCTAACATGTTAAATTCTTAGTTATAAGGAACTTAGAAATTGATGCTGTTCTTGTATGGTTTCTATGTCTGTTTCTCTTGATGGTAACAACCATTTGCAAGTGATACGGTTTATGACATGCTCAATCTCATGAACTATTGTACTCCTTGGAAATATTGTTGCAGGATCCCCTTGGGGCGTTTCTGATCAAACCTGGAATGAAAGGAGATAGTCCCACCCAGTGCCCATCACCCCCACCACTTGATGCTGAAGGTGAAGACGATGACGACGATGATGGGGATGGCGACTTAAGTGAAGGTGAAGGTGACGAGGATTTATCATCTGAAGATGGCGATGACTACGCCAACAACCTTAACAACAATAGTAAAAGTAATTCAAAGAAGAATCCCGAGGGCGGAGCTGGTGGGGCCGAAGAGAATGGGGAGGAAGAAGAAGAGTTTGACGGGGAGGAGGATCAAGATGATGATGGGGATGATGATGATGAAAACGATGATGGTGACGACGACGACGAAGATGACGACGGTGATGACGATGATGATGGTGGAGAAGACGAGGATGAAGTAGCAGACGAGGATGAAGATGAGGAAGAGGAGGACGAGGATGAAGATGAGGAAGCACTCCAGCCTCCCAAGAAGAGGAAGAAGTAA
mRNA sequence
ATGCTAGGCCCTGGCCAGCGACATGATCCCCTTGGGGCGTTTCTGATCAAACCTGGAATGAAAGGAGATAGTCCCACCCAGTGCCCATCACCCCCACCACTTGATGCTGAAGGTGAAGACGATGACGACGATGATGGGGATGGCGACTTAAGTGAAGGTGAAGGTGACGAGGATTTATCATCTGAAGATGGCGATGACTACGCCAACAACCTTAACAACAATAGTAAAAGTAATTCAAAGAAGAATCCCGAGGGCGGAGCTGGTGGGGCCGAAGAGAATGGGGAGGAAGAAGAAGAGTTTGACGGGGAGGAGGATCAAGATGATGATGGGGATGATGATGATGAAAACGATGATGGTGACGACGACGACGAAGATGACGACGGTGATGACGATGATGATGGTGGAGAAGACGAGGATGAAGTAGCAGACGAGGATGAAGATGAGGAAGAGGAGGACGAGGATGAAGATGAGGAAGCACTCCAGCCTCCCAAGAAGAGGAAGAAGTAA
Coding sequence (CDS)
ATGCTAGGCCCTGGCCAGCGACATGATCCCCTTGGGGCGTTTCTGATCAAACCTGGAATGAAAGGAGATAGTCCCACCCAGTGCCCATCACCCCCACCACTTGATGCTGAAGGTGAAGACGATGACGACGATGATGGGGATGGCGACTTAAGTGAAGGTGAAGGTGACGAGGATTTATCATCTGAAGATGGCGATGACTACGCCAACAACCTTAACAACAATAGTAAAAGTAATTCAAAGAAGAATCCCGAGGGCGGAGCTGGTGGGGCCGAAGAGAATGGGGAGGAAGAAGAAGAGTTTGACGGGGAGGAGGATCAAGATGATGATGGGGATGATGATGATGAAAACGATGATGGTGACGACGACGACGAAGATGACGACGGTGATGACGATGATGATGGTGGAGAAGACGAGGATGAAGTAGCAGACGAGGATGAAGATGAGGAAGAGGAGGACGAGGATGAAGATGAGGAAGCACTCCAGCCTCCCAAGAAGAGGAAGAAGTAA
Protein sequence
MLGPGQRHDPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLSSEDGDDYANNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGDDDDEDDDGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Homology
BLAST of Carg00673 vs. NCBI nr
Match:
KAG7034174.1 (hypothetical protein SDJN02_03901, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 258.1 bits (658), Expect = 5.4e-65
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
Query: 1 MLGPGQRHDPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLS 60
MLGPGQRHDPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLS
Sbjct: 1 MLGPGQRHDPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLS 60
Query: 61 SEDGDDYANNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGD 120
SEDGDDYANNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGD
Sbjct: 61 SEDGDDYANNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGD 120
Query: 121 DDDEDDDGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 169
DDDEDDDGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Sbjct: 121 DDDEDDDGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 168
BLAST of Carg00673 vs. NCBI nr
Match:
XP_023543922.1 (prostatic spermine-binding protein-like [Cucurbita pepo subsp. pepo] >XP_023543924.1 prostatic spermine-binding protein-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 236.1 bits (601), Expect = 2.2e-58
Identity = 157/160 (98.12%), Postives = 160/160 (100.00%), Query Frame = 0
Query: 9 DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 68
DPLGAFLIKPGMKGDSPTQCPSPPPLDAEG+DDDDDDGDGDLSEGEGDEDLSSEDGDDYA
Sbjct: 41 DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGDDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 100
Query: 69 NNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGDDDDEDDDG 128
NNLN+NSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDD+NDDGDDDDEDDDG
Sbjct: 101 NNLNDNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDEDDDG 160
Query: 129 DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 169
DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Sbjct: 161 DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 200
BLAST of Carg00673 vs. NCBI nr
Match:
KAG6604010.1 (hypothetical protein SDJN03_04619, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 235.7 bits (600), Expect = 2.9e-58
Identity = 158/160 (98.75%), Postives = 159/160 (99.38%), Query Frame = 0
Query: 9 DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 68
DPLGAFLIK GMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLSSEDGDDYA
Sbjct: 135 DPLGAFLIKHGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 194
Query: 69 NNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGDDDDEDDDG 128
NNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDD+NDDGDDDDEDDDG
Sbjct: 195 NNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDEDDDG 254
Query: 129 DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 169
DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Sbjct: 255 DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 294
BLAST of Carg00673 vs. NCBI nr
Match:
XP_022977276.1 (prostatic spermine-binding protein-like [Cucurbita maxima])
HSP 1 Score: 233.8 bits (595), Expect = 1.1e-57
Identity = 156/160 (97.50%), Postives = 159/160 (99.38%), Query Frame = 0
Query: 9 DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 68
DPLGAFLIKPGMKGDSPTQCPSPPPLDAEG+DDDDDDGDGDLSEGEGDEDLSSEDGDDYA
Sbjct: 41 DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGDDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 100
Query: 69 NNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGDDDDEDDDG 128
NNLN+NSKSNSKK PEGGAGGAEENGEEEEEFDGEEDQDDDGDDDD+NDDGDDDDEDDDG
Sbjct: 101 NNLNDNSKSNSKKTPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDEDDDG 160
Query: 129 DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 169
DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Sbjct: 161 DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 200
BLAST of Carg00673 vs. NCBI nr
Match:
XP_022950769.1 (prostatic spermine-binding protein [Cucurbita moschata] >XP_022950770.1 prostatic spermine-binding protein [Cucurbita moschata] >XP_022950773.1 prostatic spermine-binding protein [Cucurbita moschata])
HSP 1 Score: 231.5 bits (589), Expect = 5.4e-57
Identity = 157/161 (97.52%), Postives = 160/161 (99.38%), Query Frame = 0
Query: 9 DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 68
DPLGAFLIKPGMKGDSPTQCPSPPPLDAEG+DDDDDDGDGDLSEGEGDEDLSSEDGDDYA
Sbjct: 41 DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGDDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 100
Query: 69 NNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGDDDDEDDDG 128
NNLN+NSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDD+NDDGDDDDEDDDG
Sbjct: 101 NNLNDNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDEDDDG 160
Query: 129 -DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 169
DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Sbjct: 161 DDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 201
BLAST of Carg00673 vs. ExPASy TrEMBL
Match:
A0A6J1IJG0 (prostatic spermine-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111477642 PE=4 SV=1)
HSP 1 Score: 233.8 bits (595), Expect = 5.3e-58
Identity = 156/160 (97.50%), Postives = 159/160 (99.38%), Query Frame = 0
Query: 9 DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 68
DPLGAFLIKPGMKGDSPTQCPSPPPLDAEG+DDDDDDGDGDLSEGEGDEDLSSEDGDDYA
Sbjct: 41 DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGDDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 100
Query: 69 NNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGDDDDEDDDG 128
NNLN+NSKSNSKK PEGGAGGAEENGEEEEEFDGEEDQDDDGDDDD+NDDGDDDDEDDDG
Sbjct: 101 NNLNDNSKSNSKKTPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDEDDDG 160
Query: 129 DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 169
DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Sbjct: 161 DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 200
BLAST of Carg00673 vs. ExPASy TrEMBL
Match:
A0A6J1GGT6 (prostatic spermine-binding protein OS=Cucurbita moschata OX=3662 GN=LOC111453777 PE=4 SV=1)
HSP 1 Score: 231.5 bits (589), Expect = 2.6e-57
Identity = 157/161 (97.52%), Postives = 160/161 (99.38%), Query Frame = 0
Query: 9 DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 68
DPLGAFLIKPGMKGDSPTQCPSPPPLDAEG+DDDDDDGDGDLSEGEGDEDLSSEDGDDYA
Sbjct: 41 DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGDDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 100
Query: 69 NNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGDDDDEDDDG 128
NNLN+NSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDD+NDDGDDDDEDDDG
Sbjct: 101 NNLNDNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDEDDDG 160
Query: 129 -DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 169
DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Sbjct: 161 DDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 201
BLAST of Carg00673 vs. ExPASy TrEMBL
Match:
A0A6J1BSS9 (phosphopantothenoylcysteine decarboxylase subunit VHS3 OS=Momordica charantia OX=3673 GN=LOC111005439 PE=4 SV=1)
HSP 1 Score: 190.3 bits (482), Expect = 6.7e-45
Identity = 141/163 (86.50%), Postives = 150/163 (92.02%), Query Frame = 0
Query: 9 DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDD---DGDGDLSEGEGDEDLSSEDGD 68
+PLG FLI+PGMKGDSPTQCPS PLDAEG+ DDDD DGDGDLS G+EDLSSEDGD
Sbjct: 41 NPLGIFLIRPGMKGDSPTQCPSSTPLDAEGDGDDDDEDGDGDGDLS---GEEDLSSEDGD 100
Query: 69 DYANNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGDDDDED 128
DYANNLN+N+KSNSKKNPE GGAEENGEEEEEFDGEEDQDDDGDDDD+NDDGDDDD+D
Sbjct: 101 DYANNLNDNNKSNSKKNPE---GGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDDD 160
Query: 129 DDGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 169
DDGDDDDDGGEDEDEVADEDEDEEEE+EDEDEEALQPPKKRKK
Sbjct: 161 DDGDDDDDGGEDEDEVADEDEDEEEEEEDEDEEALQPPKKRKK 197
BLAST of Carg00673 vs. ExPASy TrEMBL
Match:
A0A0A0KIZ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501250 PE=4 SV=1)
HSP 1 Score: 182.2 bits (461), Expect = 1.8e-42
Identity = 138/164 (84.15%), Postives = 147/164 (89.63%), Query Frame = 0
Query: 9 DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDD--DGDGDLSEGEGDEDLSSEDGDD 68
D LGAFLI P MKGDS T CPS PLDA G+ DDDD DGDGDLSEGEG+EDLSSEDGDD
Sbjct: 53 DSLGAFLINPEMKGDSSTLCPSSTPLDAGGDVDDDDEGDGDGDLSEGEGEEDLSSEDGDD 112
Query: 69 YANNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGDDDDEDD 128
Y NNLN+N+KSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDD+NDDGD+DD+D+
Sbjct: 113 YTNNLNDNNKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDEDDDDE 172
Query: 129 DG--DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 169
DG DDDDDGGEDEDEVAD DE+EEDEDEDEEALQPPKKRKK
Sbjct: 173 DGDDDDDDDGGEDEDEVAD---DEDEEDEDEDEEALQPPKKRKK 213
BLAST of Carg00673 vs. ExPASy TrEMBL
Match:
A0A6J1KLW4 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucurbita maxima OX=3661 GN=LOC111496904 PE=4 SV=1)
HSP 1 Score: 181.4 bits (459), Expect = 3.1e-42
Identity = 136/160 (85.00%), Postives = 148/160 (92.50%), Query Frame = 0
Query: 9 DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 68
+PLGA LIKPGMKG+SPTQC S PLDAE + DDD+DGDGDLSEGE +EDLSSEDGD YA
Sbjct: 41 EPLGARLIKPGMKGNSPTQCSSCTPLDAEEDGDDDEDGDGDLSEGEDEEDLSSEDGDKYA 100
Query: 69 NNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGDDDDEDDDG 128
NNLN N+KSNSKK+ EGGAGGAEENGE+EEEFDG EDQDDDGDDDD+NDDGDDDDEDDDG
Sbjct: 101 NNLNGNNKSNSKKSQEGGAGGAEENGEDEEEFDG-EDQDDDGDDDDDNDDGDDDDEDDDG 160
Query: 129 DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 169
+DDDDGGEDEDEVADE+ED E+EDEDEDEEALQPPKKRKK
Sbjct: 161 EDDDDGGEDEDEVADEEED-EDEDEDEDEEALQPPKKRKK 198
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7034174.1 | 5.4e-65 | 100.00 | hypothetical protein SDJN02_03901, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_023543922.1 | 2.2e-58 | 98.13 | prostatic spermine-binding protein-like [Cucurbita pepo subsp. pepo] >XP_0235439... | [more] |
KAG6604010.1 | 2.9e-58 | 98.75 | hypothetical protein SDJN03_04619, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022977276.1 | 1.1e-57 | 97.50 | prostatic spermine-binding protein-like [Cucurbita maxima] | [more] |
XP_022950769.1 | 5.4e-57 | 97.52 | prostatic spermine-binding protein [Cucurbita moschata] >XP_022950770.1 prostati... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1IJG0 | 5.3e-58 | 97.50 | prostatic spermine-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111477... | [more] |
A0A6J1GGT6 | 2.6e-57 | 97.52 | prostatic spermine-binding protein OS=Cucurbita moschata OX=3662 GN=LOC111453777... | [more] |
A0A6J1BSS9 | 6.7e-45 | 86.50 | phosphopantothenoylcysteine decarboxylase subunit VHS3 OS=Momordica charantia OX... | [more] |
A0A0A0KIZ3 | 1.8e-42 | 84.15 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501250 PE=4 SV=1 | [more] |
A0A6J1KLW4 | 3.1e-42 | 85.00 | phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucurbita maxima ... | [more] |
Match Name | E-value | Identity | Description | |