Carg00673 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00673
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprostatic spermine-binding protein-like
LocationCarg_Chr03: 6202475 .. 6203388 (+)
RNA-Seq ExpressionCarg00673
SyntenyCarg00673
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAGGCCCTGGCCAGCGACATGTACGCCTGCCGTTCTATTATTCATTTCTGTTAACACGCCCCATTGTAGTCTGTTAGAAATTATAAATAATAAATCCTTATCACTACTAGCCATCAAGTTTTAAAATTGTAAAAAGAAACGAACCTGATTAATTGCATGGTATGACTCGCAATTTGACTTCTTAAATCGTATAAACTTGGCTTATAGAAAATTTTTGTCTTGTTTTTAGCATTATTGTTTGTTGGTTTCATTAAAATATGTTGCCTAACATGTTAAATTCTTAGTTATAAGGAACTTAGAAATTGATGCTGTTCTTGTATGGTTTCTATGTCTGTTTCTCTTGATGGTAACAACCATTTGCAAGTGATACGGTTTATGACATGCTCAATCTCATGAACTATTGTACTCCTTGGAAATATTGTTGCAGGATCCCCTTGGGGCGTTTCTGATCAAACCTGGAATGAAAGGAGATAGTCCCACCCAGTGCCCATCACCCCCACCACTTGATGCTGAAGGTGAAGACGATGACGACGATGATGGGGATGGCGACTTAAGTGAAGGTGAAGGTGACGAGGATTTATCATCTGAAGATGGCGATGACTACGCCAACAACCTTAACAACAATAGTAAAAGTAATTCAAAGAAGAATCCCGAGGGCGGAGCTGGTGGGGCCGAAGAGAATGGGGAGGAAGAAGAAGAGTTTGACGGGGAGGAGGATCAAGATGATGATGGGGATGATGATGATGAAAACGATGATGGTGACGACGACGACGAAGATGACGACGGTGATGACGATGATGATGGTGGAGAAGACGAGGATGAAGTAGCAGACGAGGATGAAGATGAGGAAGAGGAGGACGAGGATGAAGATGAGGAAGCACTCCAGCCTCCCAAGAAGAGGAAGAAGTAA

mRNA sequence

ATGCTAGGCCCTGGCCAGCGACATGATCCCCTTGGGGCGTTTCTGATCAAACCTGGAATGAAAGGAGATAGTCCCACCCAGTGCCCATCACCCCCACCACTTGATGCTGAAGGTGAAGACGATGACGACGATGATGGGGATGGCGACTTAAGTGAAGGTGAAGGTGACGAGGATTTATCATCTGAAGATGGCGATGACTACGCCAACAACCTTAACAACAATAGTAAAAGTAATTCAAAGAAGAATCCCGAGGGCGGAGCTGGTGGGGCCGAAGAGAATGGGGAGGAAGAAGAAGAGTTTGACGGGGAGGAGGATCAAGATGATGATGGGGATGATGATGATGAAAACGATGATGGTGACGACGACGACGAAGATGACGACGGTGATGACGATGATGATGGTGGAGAAGACGAGGATGAAGTAGCAGACGAGGATGAAGATGAGGAAGAGGAGGACGAGGATGAAGATGAGGAAGCACTCCAGCCTCCCAAGAAGAGGAAGAAGTAA

Coding sequence (CDS)

ATGCTAGGCCCTGGCCAGCGACATGATCCCCTTGGGGCGTTTCTGATCAAACCTGGAATGAAAGGAGATAGTCCCACCCAGTGCCCATCACCCCCACCACTTGATGCTGAAGGTGAAGACGATGACGACGATGATGGGGATGGCGACTTAAGTGAAGGTGAAGGTGACGAGGATTTATCATCTGAAGATGGCGATGACTACGCCAACAACCTTAACAACAATAGTAAAAGTAATTCAAAGAAGAATCCCGAGGGCGGAGCTGGTGGGGCCGAAGAGAATGGGGAGGAAGAAGAAGAGTTTGACGGGGAGGAGGATCAAGATGATGATGGGGATGATGATGATGAAAACGATGATGGTGACGACGACGACGAAGATGACGACGGTGATGACGATGATGATGGTGGAGAAGACGAGGATGAAGTAGCAGACGAGGATGAAGATGAGGAAGAGGAGGACGAGGATGAAGATGAGGAAGCACTCCAGCCTCCCAAGAAGAGGAAGAAGTAA

Protein sequence

MLGPGQRHDPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLSSEDGDDYANNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGDDDDEDDDGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Homology
BLAST of Carg00673 vs. NCBI nr
Match: KAG7034174.1 (hypothetical protein SDJN02_03901, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.1 bits (658), Expect = 5.4e-65
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0

Query: 1   MLGPGQRHDPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLS 60
           MLGPGQRHDPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLS
Sbjct: 1   MLGPGQRHDPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLS 60

Query: 61  SEDGDDYANNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGD 120
           SEDGDDYANNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGD
Sbjct: 61  SEDGDDYANNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGD 120

Query: 121 DDDEDDDGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 169
           DDDEDDDGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Sbjct: 121 DDDEDDDGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 168

BLAST of Carg00673 vs. NCBI nr
Match: XP_023543922.1 (prostatic spermine-binding protein-like [Cucurbita pepo subsp. pepo] >XP_023543924.1 prostatic spermine-binding protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236.1 bits (601), Expect = 2.2e-58
Identity = 157/160 (98.12%), Postives = 160/160 (100.00%), Query Frame = 0

Query: 9   DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 68
           DPLGAFLIKPGMKGDSPTQCPSPPPLDAEG+DDDDDDGDGDLSEGEGDEDLSSEDGDDYA
Sbjct: 41  DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGDDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 100

Query: 69  NNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGDDDDEDDDG 128
           NNLN+NSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDD+NDDGDDDDEDDDG
Sbjct: 101 NNLNDNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDEDDDG 160

Query: 129 DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 169
           DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Sbjct: 161 DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 200

BLAST of Carg00673 vs. NCBI nr
Match: KAG6604010.1 (hypothetical protein SDJN03_04619, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 235.7 bits (600), Expect = 2.9e-58
Identity = 158/160 (98.75%), Postives = 159/160 (99.38%), Query Frame = 0

Query: 9   DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 68
           DPLGAFLIK GMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLSSEDGDDYA
Sbjct: 135 DPLGAFLIKHGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 194

Query: 69  NNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGDDDDEDDDG 128
           NNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDD+NDDGDDDDEDDDG
Sbjct: 195 NNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDEDDDG 254

Query: 129 DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 169
           DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Sbjct: 255 DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 294

BLAST of Carg00673 vs. NCBI nr
Match: XP_022977276.1 (prostatic spermine-binding protein-like [Cucurbita maxima])

HSP 1 Score: 233.8 bits (595), Expect = 1.1e-57
Identity = 156/160 (97.50%), Postives = 159/160 (99.38%), Query Frame = 0

Query: 9   DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 68
           DPLGAFLIKPGMKGDSPTQCPSPPPLDAEG+DDDDDDGDGDLSEGEGDEDLSSEDGDDYA
Sbjct: 41  DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGDDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 100

Query: 69  NNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGDDDDEDDDG 128
           NNLN+NSKSNSKK PEGGAGGAEENGEEEEEFDGEEDQDDDGDDDD+NDDGDDDDEDDDG
Sbjct: 101 NNLNDNSKSNSKKTPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDEDDDG 160

Query: 129 DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 169
           DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Sbjct: 161 DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 200

BLAST of Carg00673 vs. NCBI nr
Match: XP_022950769.1 (prostatic spermine-binding protein [Cucurbita moschata] >XP_022950770.1 prostatic spermine-binding protein [Cucurbita moschata] >XP_022950773.1 prostatic spermine-binding protein [Cucurbita moschata])

HSP 1 Score: 231.5 bits (589), Expect = 5.4e-57
Identity = 157/161 (97.52%), Postives = 160/161 (99.38%), Query Frame = 0

Query: 9   DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 68
           DPLGAFLIKPGMKGDSPTQCPSPPPLDAEG+DDDDDDGDGDLSEGEGDEDLSSEDGDDYA
Sbjct: 41  DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGDDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 100

Query: 69  NNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGDDDDEDDDG 128
           NNLN+NSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDD+NDDGDDDDEDDDG
Sbjct: 101 NNLNDNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDEDDDG 160

Query: 129 -DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 169
            DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Sbjct: 161 DDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 201

BLAST of Carg00673 vs. ExPASy TrEMBL
Match: A0A6J1IJG0 (prostatic spermine-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111477642 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 5.3e-58
Identity = 156/160 (97.50%), Postives = 159/160 (99.38%), Query Frame = 0

Query: 9   DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 68
           DPLGAFLIKPGMKGDSPTQCPSPPPLDAEG+DDDDDDGDGDLSEGEGDEDLSSEDGDDYA
Sbjct: 41  DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGDDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 100

Query: 69  NNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGDDDDEDDDG 128
           NNLN+NSKSNSKK PEGGAGGAEENGEEEEEFDGEEDQDDDGDDDD+NDDGDDDDEDDDG
Sbjct: 101 NNLNDNSKSNSKKTPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDEDDDG 160

Query: 129 DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 169
           DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Sbjct: 161 DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 200

BLAST of Carg00673 vs. ExPASy TrEMBL
Match: A0A6J1GGT6 (prostatic spermine-binding protein OS=Cucurbita moschata OX=3662 GN=LOC111453777 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.6e-57
Identity = 157/161 (97.52%), Postives = 160/161 (99.38%), Query Frame = 0

Query: 9   DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 68
           DPLGAFLIKPGMKGDSPTQCPSPPPLDAEG+DDDDDDGDGDLSEGEGDEDLSSEDGDDYA
Sbjct: 41  DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGDDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 100

Query: 69  NNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGDDDDEDDDG 128
           NNLN+NSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDD+NDDGDDDDEDDDG
Sbjct: 101 NNLNDNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDEDDDG 160

Query: 129 -DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 169
            DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Sbjct: 161 DDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 201

BLAST of Carg00673 vs. ExPASy TrEMBL
Match: A0A6J1BSS9 (phosphopantothenoylcysteine decarboxylase subunit VHS3 OS=Momordica charantia OX=3673 GN=LOC111005439 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 6.7e-45
Identity = 141/163 (86.50%), Postives = 150/163 (92.02%), Query Frame = 0

Query: 9   DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDD---DGDGDLSEGEGDEDLSSEDGD 68
           +PLG FLI+PGMKGDSPTQCPS  PLDAEG+ DDDD   DGDGDLS   G+EDLSSEDGD
Sbjct: 41  NPLGIFLIRPGMKGDSPTQCPSSTPLDAEGDGDDDDEDGDGDGDLS---GEEDLSSEDGD 100

Query: 69  DYANNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGDDDDED 128
           DYANNLN+N+KSNSKKNPE   GGAEENGEEEEEFDGEEDQDDDGDDDD+NDDGDDDD+D
Sbjct: 101 DYANNLNDNNKSNSKKNPE---GGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDDD 160

Query: 129 DDGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 169
           DDGDDDDDGGEDEDEVADEDEDEEEE+EDEDEEALQPPKKRKK
Sbjct: 161 DDGDDDDDGGEDEDEVADEDEDEEEEEEDEDEEALQPPKKRKK 197

BLAST of Carg00673 vs. ExPASy TrEMBL
Match: A0A0A0KIZ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501250 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.8e-42
Identity = 138/164 (84.15%), Postives = 147/164 (89.63%), Query Frame = 0

Query: 9   DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDD--DGDGDLSEGEGDEDLSSEDGDD 68
           D LGAFLI P MKGDS T CPS  PLDA G+ DDDD  DGDGDLSEGEG+EDLSSEDGDD
Sbjct: 53  DSLGAFLINPEMKGDSSTLCPSSTPLDAGGDVDDDDEGDGDGDLSEGEGEEDLSSEDGDD 112

Query: 69  YANNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGDDDDEDD 128
           Y NNLN+N+KSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDD+NDDGD+DD+D+
Sbjct: 113 YTNNLNDNNKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDEDDDDE 172

Query: 129 DG--DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 169
           DG  DDDDDGGEDEDEVAD   DE+EEDEDEDEEALQPPKKRKK
Sbjct: 173 DGDDDDDDDGGEDEDEVAD---DEDEEDEDEDEEALQPPKKRKK 213

BLAST of Carg00673 vs. ExPASy TrEMBL
Match: A0A6J1KLW4 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucurbita maxima OX=3661 GN=LOC111496904 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 3.1e-42
Identity = 136/160 (85.00%), Postives = 148/160 (92.50%), Query Frame = 0

Query: 9   DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGEDDDDDDGDGDLSEGEGDEDLSSEDGDDYA 68
           +PLGA LIKPGMKG+SPTQC S  PLDAE + DDD+DGDGDLSEGE +EDLSSEDGD YA
Sbjct: 41  EPLGARLIKPGMKGNSPTQCSSCTPLDAEEDGDDDEDGDGDLSEGEDEEDLSSEDGDKYA 100

Query: 69  NNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGDDDDEDDDG 128
           NNLN N+KSNSKK+ EGGAGGAEENGE+EEEFDG EDQDDDGDDDD+NDDGDDDDEDDDG
Sbjct: 101 NNLNGNNKSNSKKSQEGGAGGAEENGEDEEEFDG-EDQDDDGDDDDDNDDGDDDDEDDDG 160

Query: 129 DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 169
           +DDDDGGEDEDEVADE+ED E+EDEDEDEEALQPPKKRKK
Sbjct: 161 EDDDDGGEDEDEVADEEED-EDEDEDEDEEALQPPKKRKK 198

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7034174.15.4e-65100.00hypothetical protein SDJN02_03901, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023543922.12.2e-5898.13prostatic spermine-binding protein-like [Cucurbita pepo subsp. pepo] >XP_0235439... [more]
KAG6604010.12.9e-5898.75hypothetical protein SDJN03_04619, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022977276.11.1e-5797.50prostatic spermine-binding protein-like [Cucurbita maxima][more]
XP_022950769.15.4e-5797.52prostatic spermine-binding protein [Cucurbita moschata] >XP_022950770.1 prostati... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1IJG05.3e-5897.50prostatic spermine-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111477... [more]
A0A6J1GGT62.6e-5797.52prostatic spermine-binding protein OS=Cucurbita moschata OX=3662 GN=LOC111453777... [more]
A0A6J1BSS96.7e-4586.50phosphopantothenoylcysteine decarboxylase subunit VHS3 OS=Momordica charantia OX... [more]
A0A0A0KIZ31.8e-4284.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501250 PE=4 SV=1[more]
A0A6J1KLW43.1e-4285.00phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucurbita maxima ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..168
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..158
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00673-RACarg00673-RAmRNA