Carg00639 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00639
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr03: 6016241 .. 6018482 (+)
RNA-Seq ExpressionCarg00639
SyntenyCarg00639
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCGACGTCGTCGTGAGCGGCGGCGGAGCGACGAGAGAAGAGCCGTCGCCGTTGCAGACATTAGAGGAACAAGAACATTGCTGTCGCAGAGGCCGAGACATGCAGATGACGGCCATGCACGATCGTTCTCAGAGAGAAACGTGAGCATTTGTTCTAATCCAGCTTCTCGCGAAATTCTTCGTCAATTCTCGAAAATCTCCTTCGGTTCTTCTTGTATGAAGGTAAACGCATTATGATTTAAGCGTAGATCGGAAGTTTTTGTGCATTTCGTGCTGCTTGAATTCTCGAGCCATTTTAGCACCAAAAGGAAAAAAGGCGCTCTTCGATTAGAGCGTAAGAAGATCATGACTAATTAATGCAGTACATTTTAGCGCACGATCATAGCCCCATGGAAATTACTTGGCTATTCTTGTTATAAATCCTTCAATCTTAGTATTGTTCAAGCCTTGTTTACGATAAGTTGAGATTAGTTTTTTTTTTTTTTTTTTTTTTTGAGAAATCTTAGAAAGTGAATATTACTTCTTCAATCAATAAATTTTTTTAGATTAGAAATGGAAGTAATGATTAACGATTAGTCTGATTCTTCCTGCAGAAAAAGTTCATGTTCGTTAACAAGAAAATGGGAATTTCCGTTGCTTCTTGTAGTTTTATATATTATTACTATTTTCTATTCCGTTGCCCGTTGGGGATATTTATCTTTTACTTTTGTCGCTTTCCGATGTATTCGAAAGCAGACTGGAGAGGGCCCGTTTTACGGTGGCGGTGGATAAAGCTGAGGGCACTGCCACCGCTGTGCGAACAGTCGAAAAAGTTGCAAGTGCTGCGGCGCTGCTGCCGCTGGTCTGAACTTCTTTTGAAAAGACATTAAATTCGAACAAGTATTCTCTCAAAAGGTCAGAATGACTTGTAATAAAGCTGAAGATGCATTATGGTTGCCTGTCAGTAGTCGACCGCATGGTAAAGTTGAAGCACCTTCCATTATTTGAAGCCAACCCCCAGATTTCACAAACTGCCCACTTTCTTTCATGCTTATAATAATCCAAGTAGCAGATTATGAGCCGGAAATCGAATGGAAAATAGATGGGGGCGTCATTTTATTAAGCCGACTTCATGTTTCAAGTAAGCTTTCTTTCCCTTAGTTATTTGTAATTCTAAGGTATTTTGTGACGCTTGTTTTGTTTACAACCTTGAATCTGACTGATGGTTATGTTGGGCTGATGAAACTTTTATTTTCCCCCATTCTATAGCTTGAAGAACAAACCTCTTCGGTTTTGTAGCGAACTAGAATGGAGCAACGCCATAGATGGAGAACAGTCAAAAGCTAATCTTCTGAAGATCGCTTCAGACAATTTATTGATGTAATTTACGAAAAAGGTAACTGTTCTTCCCTTTAATTCTCGATGAATTTGTTATAGGATGAAATTTTCATCTACACAATTATGATTATTATTATTGTGTTGAAGATCATAGCGCGCTTAAAGACATGTGAGGACACTATGTGGTTGGGGGAGGAGAACGAAACATTGTTTATAAGGGTATTAGAAAACCTTTTAAAGGTGTGGAGTTCAAAAGCGTTGAAGGAAAGTGTGAGCTAGGGTCATTACATTGTATCCTTGAATTGCAATAACATTAAAGACAGATGAGCGCATCTTTTTCCTCAAACGTGCACCAAATAAATTTGAGGGCATATGTTAATGTCCAAGGTTGAAGAGTTGATTGTTAAGATTTAGAAATTGTATAAGCATGAAGGATAAGTTATATAGCATATATAGATATTGATTTATTTAACAATAGATAGCAAATCTATAGCCCTGAAAAAAAAATATATATATATATATATATATATATGAACATATTTAATTTCTGAAATTTCATTATAAATAAGAACATAAATCAAAGGTTTACATCCCCCCAATTCCAGAAAACTTTAATTAGATCTCCGGTTAGAAATATGATTCATGTTGTTTTGGTATTATGAAGAACACACACTTTCATGGTGCTTGAGGGTTTTTTTATTTCCCCTCCGCCATTCTTTTCAGTGTTAAGTAAGTTTGTAGCTTCTGGATGATGACAAAAAAATCATAACATCAGTCTGTCTGTGCAGGCCAGCCACAAAAAATCTCGTACGGAAGAAGTGAAAAATATTGATAGTTTTGAATCTAACAGTCTACCCCCCACTGCTTCTCCGGTGACAGTTTCAGGTTTGTTTTTGATAACATTATGCTTGAATCATTCAGGTTAG

mRNA sequence

TGCGACGTCGTCGTGAGCGGCGGCGGAGCGACGAGAGAAGAGCCGTCGCCGTTGCAGACATTAGAGGAACAAGAACATTGCTGTCGCAGAGGCCGAGACATGCAGATGACGGCCATGCACGATCGTTCTCAGAGAGAAACACTGGAGAGGGCCCGTTTTACGGTGGCGGTGGATAAAGCTGAGGGCACTGCCACCGCTGTGCGAACAGTCGAAAAAGTTGCAAGTGCTGCGGCGCTGCTGCCGCTGGCCAGCCACAAAAAATCTCGTACGGAAGAAGTGAAAAATATTGATAGTTTTGAATCTAACAGTCTACCCCCCACTGCTTCTCCGGTGACAGTTTCAGGTTTGTTTTTGATAACATTATGCTTGAATCATTCAGGTTAG

Coding sequence (CDS)

TGCGACGTCGTCGTGAGCGGCGGCGGAGCGACGAGAGAAGAGCCGTCGCCGTTGCAGACATTAGAGGAACAAGAACATTGCTGTCGCAGAGGCCGAGACATGCAGATGACGGCCATGCACGATCGTTCTCAGAGAGAAACACTGGAGAGGGCCCGTTTTACGGTGGCGGTGGATAAAGCTGAGGGCACTGCCACCGCTGTGCGAACAGTCGAAAAAGTTGCAAGTGCTGCGGCGCTGCTGCCGCTGGCCAGCCACAAAAAATCTCGTACGGAAGAAGTGAAAAATATTGATAGTTTTGAATCTAACAGTCTACCCCCCACTGCTTCTCCGGTGACAGTTTCAGGTTTGTTTTTGATAACATTATGCTTGAATCATTCAGGTTAG

Protein sequence

CDVVVSGGGATREEPSPLQTLEEQEHCCRRGRDMQMTAMHDRSQRETLERARFTVAVDKAEGTATAVRTVEKVASAAALLPLASHKKSRTEEVKNIDSFESNSLPPTASPVTVSGLFLITLCLNHSG
Homology
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BLAST of Carg00639 vs. NCBI nr
Match: KAG7034140.1 (hypothetical protein SDJN02_03867, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.0 bits (624), Expect = 3.6e-61
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 1   CDVVVSGGGATREEPSPLQTLEEQEHCCRRGRDMQMTAMHDRSQRETLERARFTVAVDKA 60
           CDVVVSGGGATREEPSPLQTLEEQEHCCRRGRDMQMTAMHDRSQRETLERARFTVAVDKA
Sbjct: 1   CDVVVSGGGATREEPSPLQTLEEQEHCCRRGRDMQMTAMHDRSQRETLERARFTVAVDKA 60

Query: 61  EGTATAVRTVEKVASAAALLPLASHKKSRTEEVKNIDSFESNSLPPTASPVTVSGLFLIT 120
           EGTATAVRTVEKVASAAALLPLASHKKSRTEEVKNIDSFESNSLPPTASPVTVSGLFLIT
Sbjct: 61  EGTATAVRTVEKVASAAALLPLASHKKSRTEEVKNIDSFESNSLPPTASPVTVSGLFLIT 120

Query: 121 LCLNHSG 128
           LCLNHSG
Sbjct: 121 LCLNHSG 127

The following BLAST results are available for this feature:
BLAST of Carg00639 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034140.13.6e-61100.00hypothetical protein SDJN02_03867, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg00639 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00639 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00639 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00639-RACarg00639-RAmRNA