Carg00608 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00608
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein SHI RELATED SEQUENCE 1-like
Location	Carg_Chr03: 5844979 .. 5846346 (+)
RNA-Seq Expression	Carg00608
Synteny	Carg00608

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCAGGGCCAGCAGCCGCAGCACCAGGCAATTCCAGGCAGCTGCAGCAGTTTGGTAATTAACTACAACGCACACATCCTTCCCATCTCTCCTCTTTTTTTTTTTTTTTTTTTTTTCCTTCTTCTTCTATTTTTCATTCCGAACTAATTTCAGGATTATTATTTACCAAATCCCCAAAACCCCAATTCTAGTCTCATTTCCTTTTCAATTTGTTTTTCAAAAAGATTATAATTCAAGCGCCTCCAATTCAGGACAGGGGGCGGGGGGGGGGGGGGGAGGGGTTGGACCCTCTGATTATGGATTTTAGGTCACCCACGAATTCTGGGTCAGAGCAACAATGTCTGGCTTCTTCAGTTTAGGTGGAGGAGGAAGAGAAGACCACCAAGAGCATCAAGAGCATCAAGAGCATCAAGACCACCAAGAGCACCAACAAAACAACGACACAAACCCGGAGACCTTGTTTTGGTACAAGGGCAACGTGGAGCTATGGCAACAACAACACCACCACCACCACCAGCACCCTCAACAAGAACAGCCTCTCTTCCAAACCCAATCCCGGACTCCTTACTCCGCCGCACTACCCGTTCGAACCTCCGATGAGTCCTCCTCCAGATCGGGCAATTTCATGATGATTGGGTCAGGATCCGGGGGAGGAGGAATCAGCTGCATCCTCCTCTTCTCTCGCCTGCACTCTCATCCCCAACAACACTTCTGGTACAAATACAAATACAAATACAATCATCCCTTCCCCCACTTTTATTTATTTATTTTTTTTAAATTTAATTATATAATTTTAGATTGCGTGCTGCAGATGTCAAAACTTCCCCTCGCTATAGTAAACCCCATCACCTTTTTTTTCTGTCTTCTTTACTTACTGTTATGCAGTATTCCTGACGAGTTCATCCTCTGTGTTTAATCCCTAATCTTCCATTTTTTTTTTCTAACTAAAATATTGTATTTAATTTTTTAGGGTTAGAAATTGGGAATTTCCCGGCGGAGTTGAACTCACCAGCAGTATTCCGTTGCGTTCGTGTGAGCTCCACCGACGAATCCGACGATCAATACGCGTATCAAACGGCGGTCAATATCGGAGGACATGTTTTCAAGGGAATTCTATACGATCAAGGACCCGAAACTAATTACATTCCACCAGCTGAGACCTCATCCGGTGGTGGTGGTGGTGGTGGTGGTGGGAGTAGTAGTGGAGTGCAACCATTGAATTTCATCACCGGCGCAACGGATGCGACCACCGCAAGCGGTGGTTCCTCCGCCGCATTACCCTTACTCGATCCCTCCTCCTTATATTCAACGCCGCTGAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCTTAA

mRNA sequence

ATGCAGCAGGGCCAGCAGCCGCAGCACCAGGCAATTCCAGGCAGCTGCAGCAGTTTGGTCACCCACGAATTCTGGGTCAGAGCAACAATGTCTGGCTTCTTCAGTTTAGGTGGAGGAGGAAGAGAAGACCACCAAGAGCATCAAGAGCATCAAGAGCATCAAGACCACCAAGAGCACCAACAAAACAACGACACAAACCCGGAGACCTTGTTTTGGTACAAGGGCAACGTGGAGCTATGGCAACAACAACACCACCACCACCACCAGCACCCTCAACAAGAACAGCCTCTCTTCCAAACCCAATCCCGGACTCCTTACTCCGCCGCACTACCCGATCCGGGGGAGGAGGAATCAGCTGCATCCTCCTCTTCTCTCGCCTGCACTCTCATCCCCAACAACACTTCTGGGTTAGAAATTGGGAATTTCCCGGCGGAGTTGAACTCACCAGCAGTATTCCGTTGCGTTCGTGTGAGCTCCACCGACGAATCCGACGATCAATACGCGTATCAAACGGCGGTCAATATCGGAGGACATGTTTTCAAGGGAATTCTATACGATCAAGGACCCGAAACTAATTACATTCCACCAGCTGAGACCTCATCCGGTGGTGGTGGTGGTGGTGGTGGTGGGAGTAGTAGTGGAGTGCAACCATTGAATTTCATCACCGGCGCAACGGATGCGACCACCGCAAGCGGTGGTTCCTCCGCCGCATTACCCTTACTCGATCCCTCCTCCTTATATTCAACGCCGCTGAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCTTAA

Coding sequence (CDS)

ATGCAGCAGGGCCAGCAGCCGCAGCACCAGGCAATTCCAGGCAGCTGCAGCAGTTTGGTCACCCACGAATTCTGGGTCAGAGCAACAATGTCTGGCTTCTTCAGTTTAGGTGGAGGAGGAAGAGAAGACCACCAAGAGCATCAAGAGCATCAAGAGCATCAAGACCACCAAGAGCACCAACAAAACAACGACACAAACCCGGAGACCTTGTTTTGGTACAAGGGCAACGTGGAGCTATGGCAACAACAACACCACCACCACCACCAGCACCCTCAACAAGAACAGCCTCTCTTCCAAACCCAATCCCGGACTCCTTACTCCGCCGCACTACCCGATCCGGGGGAGGAGGAATCAGCTGCATCCTCCTCTTCTCTCGCCTGCACTCTCATCCCCAACAACACTTCTGGGTTAGAAATTGGGAATTTCCCGGCGGAGTTGAACTCACCAGCAGTATTCCGTTGCGTTCGTGTGAGCTCCACCGACGAATCCGACGATCAATACGCGTATCAAACGGCGGTCAATATCGGAGGACATGTTTTCAAGGGAATTCTATACGATCAAGGACCCGAAACTAATTACATTCCACCAGCTGAGACCTCATCCGGTGGTGGTGGTGGTGGTGGTGGTGGGAGTAGTAGTGGAGTGCAACCATTGAATTTCATCACCGGCGCAACGGATGCGACCACCGCAAGCGGTGGTTCCTCCGCCGCATTACCCTTACTCGATCCCTCCTCCTTATATTCAACGCCGCTGAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCTTAA

Protein sequence

MQQGQQPQHQAIPGSCSSLVTHEFWVRATMSGFFSLGGGGREDHQEHQEHQEHQDHQEHQQNNDTNPETLFWYKGNVELWQQQHHHHHQHPQQEQPLFQTQSRTPYSAALPDPGEEESAASSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIGGHVFKGILYDQGPETNYIPPAETSSGGGGGGGGGSSSGVQPLNFITGATDATTASGGSSAALPLLDPSSLYSTPLNSFMAGTQFFLPPRS

Homology

[Close]

BLAST of Carg00608 vs. NCBI nr
Match: KAG7034109.1 (Protein SHI RELATED SEQUENCE 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 530.4 bits (1365), Expect = 8.9e-147
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0


Query: 1   MQQGQQPQHQAIPGSCSSLVTHEFWVRATMSGFFSLGGGGREDHQEHQEHQEHQDHQEHQ 60
           MQQGQQPQHQAIPGSCSSLVTHEFWVRATMSGFFSLGGGGREDHQEHQEHQEHQDHQEHQ
Sbjct: 1   MQQGQQPQHQAIPGSCSSLVTHEFWVRATMSGFFSLGGGGREDHQEHQEHQEHQDHQEHQ 60

Query: 61  QNNDTNPETLFWYKGNVELWQQQHHHHHQHPQQEQPLFQTQSRTPYSAALPDPGEEESAA 120
           QNNDTNPETLFWYKGNVELWQQQHHHHHQHPQQEQPLFQTQSRTPYSAALPDPGEEESAA
Sbjct: 61  QNNDTNPETLFWYKGNVELWQQQHHHHHQHPQQEQPLFQTQSRTPYSAALPDPGEEESAA 120

Query: 121 SSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIGGHVF 180
           SSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIGGHVF
Sbjct: 121 SSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIGGHVF 180

Query: 181 KGILYDQGPETNYIPPAETSSGGGGGGGGGSSSGVQPLNFITGATDATTASGGSSAALPL 240
           KGILYDQGPETNYIPPAETSSGGGGGGGGGSSSGVQPLNFITGATDATTASGGSSAALPL
Sbjct: 181 KGILYDQGPETNYIPPAETSSGGGGGGGGGSSSGVQPLNFITGATDATTASGGSSAALPL 240

Query: 241 LDPSSLYSTPLNSFMAGTQFFLPPRS 267
           LDPSSLYSTPLNSFMAGTQFFLPPRS
Sbjct: 241 LDPSSLYSTPLNSFMAGTQFFLPPRS 266

[Close]

BLAST of Carg00608 vs. NCBI nr
Match: KAG6603931.1 (Protein SHORT INTERNODES, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 398.3 bits (1022), Expect = 5.3e-107
Identity = 227/331 (68.58%), Postives = 230/331 (69.49%), Query Frame = 0


Query: 30  MSGFFSLGGGGREDHQEHQEHQEHQDHQEHQQNNDTNPETLFWYKGNVELWQQQHHHHHQ 89
           MSGFFSLGGGGRED   HQEHQEHQDHQEHQQNNDTNPETLFWYKGNVELWQQQHHHHHQ
Sbjct: 1   MSGFFSLGGGGRED---HQEHQEHQDHQEHQQNNDTNPETLFWYKGNVELWQQQHHHHHQ 60

Query: 90  HPQQEQPLFQTQSRTPYSAALPDPGEEESAA----------------------------- 149
           HPQQEQPLFQTQSRTPYSAALP    +ES++                             
Sbjct: 61  HPQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKD 120

Query: 150 ------------------------------------------------------------ 209
                                                                       
Sbjct: 121 CVHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRD 180

Query: 210 ----SSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIG 267
               SSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIG
Sbjct: 181 YNPTSSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIG 240

[Close]

BLAST of Carg00608 vs. NCBI nr
Match: XP_023543255.1 (protein SHI RELATED SEQUENCE 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 396.0 bits (1016), Expect = 2.6e-106
Identity = 224/330 (67.88%), Postives = 231/330 (70.00%), Query Frame = 0


Query: 30  MSGFFSLGGGGREDHQEHQEHQEHQDHQEHQQNNDTNPETLFWYKGNVELWQQQHHHHHQ 89
           MSGFFSLGGGGREDHQ+HQ+HQ+HQDHQ+HQQNNDTNPETLFWYKGNVELWQQQ HHHHQ
Sbjct: 1   MSGFFSLGGGGREDHQDHQDHQDHQDHQDHQQNNDTNPETLFWYKGNVELWQQQ-HHHHQ 60

Query: 90  HPQQEQPLFQTQSRTPYSAALPDPGEEESAA----------------------------- 149
           HPQQEQPLFQTQSRTPYSAALP    +ES++                             
Sbjct: 61  HPQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKD 120

Query: 150 ------------------------------------------------------------ 209
                                                                       
Sbjct: 121 CVHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRD 180

Query: 210 ----SSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIG 267
               SSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIG
Sbjct: 181 YNPTSSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIG 240

[Close]

BLAST of Carg00608 vs. NCBI nr
Match: XP_022949893.1 (protein SHI RELATED SEQUENCE 1-like [Cucurbita moschata] >XP_022949894.1 protein SHI RELATED SEQUENCE 1-like [Cucurbita moschata] >XP_022949895.1 protein SHI RELATED SEQUENCE 1-like [Cucurbita moschata])

HSP 1 Score: 387.5 bits (994), Expect = 9.3e-104
Identity = 222/330 (67.27%), Postives = 226/330 (68.48%), Query Frame = 0


Query: 30  MSGFFSLGGGGREDHQEHQEHQEHQDHQEHQQNNDTNPETLFWYKGNVELWQQQHHHHHQ 89
           MSGFFSLGGGGRE      EHQ+HQDHQEHQQNNDTNPETLFWYKGNVELWQQQ HHHHQ
Sbjct: 1   MSGFFSLGGGGRE------EHQDHQDHQEHQQNNDTNPETLFWYKGNVELWQQQ-HHHHQ 60

Query: 90  HPQQEQPLFQTQSRTPYSAALPDPGEEESAA----------------------------- 149
           HPQQEQPLFQTQSRTPYSAALP    +ES++                             
Sbjct: 61  HPQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKD 120

Query: 150 ------------------------------------------------------------ 209
                                                                       
Sbjct: 121 CVHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRD 180

Query: 210 ----SSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIG 267
               SSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIG
Sbjct: 181 YNPTSSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIG 240

[Close]

BLAST of Carg00608 vs. NCBI nr
Match: XP_022979003.1 (protein SHI RELATED SEQUENCE 1-like [Cucurbita maxima] >XP_022979004.1 protein SHI RELATED SEQUENCE 1-like [Cucurbita maxima])

HSP 1 Score: 364.8 bits (935), Expect = 6.5e-97
Identity = 212/330 (64.24%), Postives = 216/330 (65.45%), Query Frame = 0


Query: 30  MSGFFSLGGGGREDHQEHQEHQEHQDHQEHQQNNDTNPETLFWYKGNVELWQQQHHHHHQ 89
           MSGFFSLGGGGRE            DHQ+HQQNNDTNPETLFWYKGNVELWQQQ HHH  
Sbjct: 1   MSGFFSLGGGGRE------------DHQDHQQNNDTNPETLFWYKGNVELWQQQQHHH-- 60

Query: 90  HPQQEQPLFQTQSRTPYSAALPDPGEEESAA----------------------------- 149
           HPQQEQPLFQTQSR PYSA LP    +ES++                             
Sbjct: 61  HPQQEQPLFQTQSRIPYSAPLPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKD 120

Query: 150 ------------------------------------------------------------ 209
                                                                       
Sbjct: 121 CAHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRD 180

Query: 210 ----SSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIG 267
               SSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIG
Sbjct: 181 YNPTSSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIG 240

[Close]

BLAST of Carg00608 vs. ExPASy Swiss-Prot
Match: Q9SD40 (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 157.5 bits (397), Expect = 2.1e-37
Identity = 96/192 (50.00%), Postives = 125/192 (65.10%), Query Frame = 0


Query: 92  QQEQPLFQTQSRTPYSAALPDPGEEESAASSSSLACTLIPNNTSGLEIGNFPAELNSPAV 151
           QQ+    Q Q++ P   ++P    E   A+SSSL CT IP++ SGLE+GNFPAE++S AV
Sbjct: 189 QQQLATVQPQTQLPRGESVPKRHRENLPATSSSLVCTRIPSH-SGLEVGNFPAEVSSSAV 248

Query: 152 FRCVRVSSTDESDDQYAYQTAVNIGGHVFKGILYDQGPET------NYIPPAETSSGGGG 211
           FRCVRVSS ++ ++++AYQTAV+IGGH+FKGILYD GP +      N +   E+SSGGG 
Sbjct: 249 FRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLGPGSSGGGGYNVVAAGESSSGGG- 308

Query: 212 GGGGGSSSGVQPLNFIT-GATDATTAS------GG----SSAALPLLDPSSLYSTPLNSF 267
                   G Q LN IT G+    TAS      GG    S+AA   +DP++LY TP+N+F
Sbjct: 309 --------GAQQLNLITAGSVTVATASSSTPNLGGIGSSSAAAATYIDPAALYPTPINTF 368

[Close]

BLAST of Carg00608 vs. ExPASy Swiss-Prot
Match: Q9XGX0 (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.8e-32
Identity = 88/185 (47.57%), Postives = 113/185 (61.08%), Query Frame = 0


Query: 92  QQEQPLFQTQSRTPYSAALPDPGEEESAASSSSLACTLIP-NNTSGLEIGNFPAELNSPA 151
           +++Q L   Q       ++P    E   A S+S+A T IP NNTSGLE+GNFP E++S A
Sbjct: 163 ERQQQLSTGQQPQQLGGSVPKRQRERIPARSTSMAYTRIPSNNTSGLEVGNFPPEVSSSA 222

Query: 152 VFRCVRVSSTDESDDQYAYQTAVNIGGHVFKGILYDQGPETNYIPPAETSSGGGGGGGGG 211
           VFRCVRVSS D+ +++YAY+TAV+IGGHVFKG+LYDQG       PAE SS GGG     
Sbjct: 223 VFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQG-------PAERSSSGGGS---- 282

Query: 212 SSSGVQPLNFITGATDATTASGG--------SSAALPLLDPSSL-YSTPLNSFMAGTQFF 267
                QPLN IT    A+++S           S +   +DP+SL Y TP+N+FM GT FF
Sbjct: 283 -----QPLNLITAGPSASSSSPNVSCNNGVVGSTSDHYIDPASLNYPTPINTFMTGTHFF 331

[Close]

BLAST of Carg00608 vs. ExPASy Swiss-Prot
Match: K4B6C9 (Protein EXPRESSION OF TERPENOIDS 1 OS=Solanum lycopersicum OX=4081 GN=EOT1 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.7e-28
Identity = 78/151 (51.66%), Postives = 104/151 (68.87%), Query Frame = 0


Query: 121 SSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIGGHVF 180
           S+SSL  T +P+NT+GLE+G FP+++ + AVF+C+++SS ++ +DQ AYQ AV+IGGHVF
Sbjct: 204 SASSLVSTRLPSNTNGLEVGKFPSKVRTSAVFQCIQMSSIEDDEDQLAYQAAVSIGGHVF 263

Query: 181 KGILYDQGPETNYIPPAETSSGGGGGGGGGSSSGVQ--PLNFITGATDATTASGGSSAAL 240
           KGILYDQG E+ Y       + GG    GGS+ GVQ    N    AT  TT+ G ++AA 
Sbjct: 264 KGILYDQGHESQY---NNMVAAGGDTSSGGSAGGVQHHHHNSAAVATATTTSGGDATAAG 323

Query: 241 P--LLDPSSLYSTPLNSFM-AGTQFFLPPRS 267
           P   LDP SL+  PL++FM AGTQFF P RS
Sbjct: 324 PSNFLDP-SLFPAPLSTFMVAGTQFFPPSRS 350

[Close]

BLAST of Carg00608 vs. ExPASy Swiss-Prot
Match: Q9LQZ5 (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.1e-26
Identity = 76/163 (46.63%), Postives = 94/163 (57.67%), Query Frame = 0


Query: 115 EEESAASSSSLACTLI--PNNTSGLEIG-NFPAELNSPAVFRCVRVSS--TDESDDQYAY 174
           ++ S    S+LA T +   N+ SGLE+  + P E+NSPA+FRCVRVSS   DE D  YAY
Sbjct: 204 KDHSGGGGSALANTRVVNANSNSGLEVSQHLPPEVNSPAIFRCVRVSSIEEDEDDQAYAY 263

Query: 175 QTAVNIGGHVFKGILYDQGPE------TNYIPPAETSSGGGGGGGGGSSSGVQPLNFITG 234
           QTAVNIGGH+FKGILYDQGPE       N +    T++                      
Sbjct: 264 QTAVNIGGHIFKGILYDQGPEHQDNHHLNLLASTATTTN-------------------VE 323

Query: 235 ATDATTASGGSSAALPLLDPSSLYSTPLNSFMAGTQFFLPPRS 267
            T   T +G ++  L +LDPSSLY   LNSF+AGT FF PPRS
Sbjct: 324 ETATKTVTGNNNNGL-MLDPSSLYPAQLNSFIAGTPFFTPPRS 346

[Close]

BLAST of Carg00608 vs. ExPASy Swiss-Prot
Match: Q9FXH7 (Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.4e-24
Identity = 71/156 (45.51%), Postives = 97/156 (62.18%), Query Frame = 0


Query: 115 EEESAASSSSLACTLIPN-NTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAV 174
           + +S    S+LACT + N ++SGLE  + P E++SPAVFRC+RVSS D+ D++YAYQTAV
Sbjct: 195 KNDSCGGGSALACTRVVNASSSGLETSHLPPEISSPAVFRCMRVSSIDDEDEEYAYQTAV 254

Query: 175 NIGGHVFKGILYDQGPETNYIPPAETSSGGGGGGGGGSSSGVQPLNFITGATDATTASGG 234
           +IGGHVFKGILYDQGP +++   + + +G        +     P    T A  A   + G
Sbjct: 255 SIGGHVFKGILYDQGPSSDHHRYSSSLNGETSHQHHLNLMDSTPSAATTNAVTAVNTNNG 314

Query: 235 SSAALPLLDPSSLY---STPLNSFMA-GTQFFLPPR 266
           S      +DPSSLY   +TP N+F+A GT FF   R
Sbjct: 315 S------IDPSSLYTAVATPFNAFVAGGTPFFASSR 344

[Close]

BLAST of Carg00608 vs. ExPASy TrEMBL
Match: A0A6J1GE84 (protein SHI RELATED SEQUENCE 1-like OS=Cucurbita moschata OX=3662 GN=LOC111453153 PE=3 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 4.5e-104
Identity = 222/330 (67.27%), Postives = 226/330 (68.48%), Query Frame = 0


Query: 30  MSGFFSLGGGGREDHQEHQEHQEHQDHQEHQQNNDTNPETLFWYKGNVELWQQQHHHHHQ 89
           MSGFFSLGGGGRE      EHQ+HQDHQEHQQNNDTNPETLFWYKGNVELWQQQ HHHHQ
Sbjct: 1   MSGFFSLGGGGRE------EHQDHQDHQEHQQNNDTNPETLFWYKGNVELWQQQ-HHHHQ 60

Query: 90  HPQQEQPLFQTQSRTPYSAALPDPGEEESAA----------------------------- 149
           HPQQEQPLFQTQSRTPYSAALP    +ES++                             
Sbjct: 61  HPQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKD 120

Query: 150 ------------------------------------------------------------ 209
                                                                       
Sbjct: 121 CVHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRD 180

Query: 210 ----SSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIG 267
               SSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIG
Sbjct: 181 YNPTSSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIG 240

[Close]

BLAST of Carg00608 vs. ExPASy TrEMBL
Match: A0A6J1IUW1 (protein SHI RELATED SEQUENCE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111478781 PE=3 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 3.1e-97
Identity = 212/330 (64.24%), Postives = 216/330 (65.45%), Query Frame = 0


Query: 30  MSGFFSLGGGGREDHQEHQEHQEHQDHQEHQQNNDTNPETLFWYKGNVELWQQQHHHHHQ 89
           MSGFFSLGGGGRE            DHQ+HQQNNDTNPETLFWYKGNVELWQQQ HHH  
Sbjct: 1   MSGFFSLGGGGRE------------DHQDHQQNNDTNPETLFWYKGNVELWQQQQHHH-- 60

Query: 90  HPQQEQPLFQTQSRTPYSAALPDPGEEESAA----------------------------- 149
           HPQQEQPLFQTQSR PYSA LP    +ES++                             
Sbjct: 61  HPQQEQPLFQTQSRIPYSAPLPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKD 120

Query: 150 ------------------------------------------------------------ 209
                                                                       
Sbjct: 121 CAHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRD 180

Query: 210 ----SSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIG 267
               SSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIG
Sbjct: 181 YNPTSSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIG 240

[Close]

BLAST of Carg00608 vs. ExPASy TrEMBL
Match: A0A5A7SN81 (Protein SHI RELATED SEQUENCE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001580 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 2.5e-70
Identity = 180/341 (52.79%), Postives = 195/341 (57.18%), Query Frame = 0


Query: 30  MSGFFSLGGGGREDHQEHQEHQEHQDHQEHQQNNDTNPETLFWYK-GNVELWQQQHHHHH 89
           MSGFF+LGGGG          +E  +++ +Q  +     +LFWYK GNVELWQQQ  HHH
Sbjct: 1   MSGFFTLGGGG------GGREEEQNNNRPNQFIHPPPDSSLFWYKAGNVELWQQQQQHHH 60

Query: 90  QHPQQEQPLFQTQSR-----TPYSAALPDPGEEESAA----------------------- 149
            H  QEQPLFQTQSR     TPYSA L     +ES++                       
Sbjct: 61  HH--QEQPLFQTQSRTTTTTTPYSAPLTVRNSDESSSRSGNFMMISSGSGGGGISCQDCG 120

Query: 150 ------------------------------------------------------------ 209
                                                                       
Sbjct: 121 NQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQTHHHHQQQQLQL 180

Query: 210 -------------SSSSLACTLIP--NNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDD 267
                        +SSSLACTLIP  NNTSGLEIGNFPAELNSPAVFRCVRVSS D++DD
Sbjct: 181 HGGDNNPKRHRDYNSSSLACTLIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSADDTDD 240

[Close]

BLAST of Carg00608 vs. ExPASy TrEMBL
Match: A0A1S3B2J6 (protein SHI RELATED SEQUENCE 1 OS=Cucumis melo OX=3656 GN=LOC103485098 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 2.5e-70
Identity = 180/341 (52.79%), Postives = 195/341 (57.18%), Query Frame = 0


Query: 30  MSGFFSLGGGGREDHQEHQEHQEHQDHQEHQQNNDTNPETLFWYK-GNVELWQQQHHHHH 89
           MSGFF+LGGGG          +E  +++ +Q  +     +LFWYK GNVELWQQQ  HHH
Sbjct: 1   MSGFFTLGGGG------GGREEEQNNNRPNQFIHPPPDSSLFWYKAGNVELWQQQQQHHH 60

Query: 90  QHPQQEQPLFQTQSR-----TPYSAALPDPGEEESAA----------------------- 149
            H  QEQPLFQTQSR     TPYSA L     +ES++                       
Sbjct: 61  HH--QEQPLFQTQSRTTTTTTPYSAPLTVRNSDESSSRSGNFMMISSGSGGGGISCQDCG 120

Query: 150 ------------------------------------------------------------ 209
                                                                       
Sbjct: 121 NQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQTHHHHQQQQLQL 180

Query: 210 -------------SSSSLACTLIP--NNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDD 267
                        +SSSLACTLIP  NNTSGLEIGNFPAELNSPAVFRCVRVSS D++DD
Sbjct: 181 HGGDNNPKRHRDYNSSSLACTLIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSADDTDD 240

[Close]

BLAST of Carg00608 vs. ExPASy TrEMBL
Match: A0A0A0KGL4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504650 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 2.8e-69
Identity = 178/342 (52.05%), Postives = 193/342 (56.43%), Query Frame = 0


Query: 30  MSGFFSLGGGGREDHQEHQEHQEHQDHQEHQQNNDTNPETLFWYK-GNVELWQQQHHHHH 89
           MSGFF+LGGGG          +E  +++ +Q  +     +LFWYK GNVELWQQQ    H
Sbjct: 1   MSGFFTLGGGG------GGRDEEQNNNRPNQFIHPPPDSSLFWYKAGNVELWQQQQQQQH 60

Query: 90  QHPQQEQPLFQTQSR-----TPYSAALPDPGEEESAA----------------------- 149
            H  QEQPLFQTQSR     TPYSA L     +ES++                       
Sbjct: 61  HHHHQEQPLFQTQSRTTTTTTPYSAPLAVRNSDESSSRSGNFMMISSGSGGGGISCQDCG 120

Query: 150 ------------------------------------------------------------ 209
                                                                       
Sbjct: 121 NQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQTHHHHHHQQQLQ 180

Query: 210 --------------SSSSLACTLIP--NNTSGLEIGNFPAELNSPAVFRCVRVSSTDESD 267
                         +SSSLACTLIP  NNTSGLEIGNFPAELNSPAVFRCVRVSS D++D
Sbjct: 181 LHGGDNNPKRHRDYNSSSLACTLIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSADDTD 240

[Close]

BLAST of Carg00608 vs. TAIR 10
Match: AT3G51060.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 157.5 bits (397), Expect = 1.5e-38
Identity = 96/192 (50.00%), Postives = 125/192 (65.10%), Query Frame = 0


Query: 92  QQEQPLFQTQSRTPYSAALPDPGEEESAASSSSLACTLIPNNTSGLEIGNFPAELNSPAV 151
           QQ+    Q Q++ P   ++P    E   A+SSSL CT IP++ SGLE+GNFPAE++S AV
Sbjct: 189 QQQLATVQPQTQLPRGESVPKRHRENLPATSSSLVCTRIPSH-SGLEVGNFPAEVSSSAV 248

Query: 152 FRCVRVSSTDESDDQYAYQTAVNIGGHVFKGILYDQGPET------NYIPPAETSSGGGG 211
           FRCVRVSS ++ ++++AYQTAV+IGGH+FKGILYD GP +      N +   E+SSGGG 
Sbjct: 249 FRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLGPGSSGGGGYNVVAAGESSSGGG- 308

Query: 212 GGGGGSSSGVQPLNFIT-GATDATTAS------GG----SSAALPLLDPSSLYSTPLNSF 267
                   G Q LN IT G+    TAS      GG    S+AA   +DP++LY TP+N+F
Sbjct: 309 --------GAQQLNLITAGSVTVATASSSTPNLGGIGSSSAAAATYIDPAALYPTPINTF 368

[Close]

BLAST of Carg00608 vs. TAIR 10
Match: AT5G66350.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 139.4 bits (350), Expect = 4.1e-33
Identity = 88/185 (47.57%), Postives = 113/185 (61.08%), Query Frame = 0


Query: 92  QQEQPLFQTQSRTPYSAALPDPGEEESAASSSSLACTLIP-NNTSGLEIGNFPAELNSPA 151
           +++Q L   Q       ++P    E   A S+S+A T IP NNTSGLE+GNFP E++S A
Sbjct: 163 ERQQQLSTGQQPQQLGGSVPKRQRERIPARSTSMAYTRIPSNNTSGLEVGNFPPEVSSSA 222

Query: 152 VFRCVRVSSTDESDDQYAYQTAVNIGGHVFKGILYDQGPETNYIPPAETSSGGGGGGGGG 211
           VFRCVRVSS D+ +++YAY+TAV+IGGHVFKG+LYDQG       PAE SS GGG     
Sbjct: 223 VFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQG-------PAERSSSGGGS---- 282

Query: 212 SSSGVQPLNFITGATDATTASGG--------SSAALPLLDPSSL-YSTPLNSFMAGTQFF 267
                QPLN IT    A+++S           S +   +DP+SL Y TP+N+FM GT FF
Sbjct: 283 -----QPLNLITAGPSASSSSPNVSCNNGVVGSTSDHYIDPASLNYPTPINTFMTGTHFF 331

[Close]

BLAST of Carg00608 vs. TAIR 10
Match: AT1G75520.1 (SHI-related sequence 5 )

HSP 1 Score: 119.0 bits (297), Expect = 5.7e-27
Identity = 76/163 (46.63%), Postives = 94/163 (57.67%), Query Frame = 0


Query: 115 EEESAASSSSLACTLI--PNNTSGLEIG-NFPAELNSPAVFRCVRVSS--TDESDDQYAY 174
           ++ S    S+LA T +   N+ SGLE+  + P E+NSPA+FRCVRVSS   DE D  YAY
Sbjct: 204 KDHSGGGGSALANTRVVNANSNSGLEVSQHLPPEVNSPAIFRCVRVSSIEEDEDDQAYAY 263

Query: 175 QTAVNIGGHVFKGILYDQGPE------TNYIPPAETSSGGGGGGGGGSSSGVQPLNFITG 234
           QTAVNIGGH+FKGILYDQGPE       N +    T++                      
Sbjct: 264 QTAVNIGGHIFKGILYDQGPEHQDNHHLNLLASTATTTN-------------------VE 323

Query: 235 ATDATTASGGSSAALPLLDPSSLYSTPLNSFMAGTQFFLPPRS 267
            T   T +G ++  L +LDPSSLY   LNSF+AGT FF PPRS
Sbjct: 324 ETATKTVTGNNNNGL-MLDPSSLYPAQLNSFIAGTPFFTPPRS 346

[Close]

BLAST of Carg00608 vs. TAIR 10
Match: AT1G19790.1 (SHI-related sequence 7 )

HSP 1 Score: 113.6 bits (283), Expect = 2.4e-25
Identity = 71/156 (45.51%), Postives = 97/156 (62.18%), Query Frame = 0


Query: 115 EEESAASSSSLACTLIPN-NTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAV 174
           + +S    S+LACT + N ++SGLE  + P E++SPAVFRC+RVSS D+ D++YAYQTAV
Sbjct: 195 KNDSCGGGSALACTRVVNASSSGLETSHLPPEISSPAVFRCMRVSSIDDEDEEYAYQTAV 254

Query: 175 NIGGHVFKGILYDQGPETNYIPPAETSSGGGGGGGGGSSSGVQPLNFITGATDATTASGG 234
           +IGGHVFKGILYDQGP +++   + + +G        +     P    T A  A   + G
Sbjct: 255 SIGGHVFKGILYDQGPSSDHHRYSSSLNGETSHQHHLNLMDSTPSAATTNAVTAVNTNNG 314

Query: 235 SSAALPLLDPSSLY---STPLNSFMA-GTQFFLPPR 266
           S      +DPSSLY   +TP N+F+A GT FF   R
Sbjct: 315 S------IDPSSLYTAVATPFNAFVAGGTPFFASSR 344

[Close]

BLAST of Carg00608 vs. TAIR 10
Match: AT1G19790.2 (SHI-related sequence 7 )

HSP 1 Score: 113.6 bits (283), Expect = 2.4e-25
Identity = 71/156 (45.51%), Postives = 97/156 (62.18%), Query Frame = 0


Query: 115 EEESAASSSSLACTLIPN-NTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAV 174
           + +S    S+LACT + N ++SGLE  + P E++SPAVFRC+RVSS D+ D++YAYQTAV
Sbjct: 195 KNDSCGGGSALACTRVVNASSSGLETSHLPPEISSPAVFRCMRVSSIDDEDEEYAYQTAV 254

Query: 175 NIGGHVFKGILYDQGPETNYIPPAETSSGGGGGGGGGSSSGVQPLNFITGATDATTASGG 234
           +IGGHVFKGILYDQGP +++   + + +G        +     P    T A  A   + G
Sbjct: 255 SIGGHVFKGILYDQGPSSDHHRYSSSLNGETSHQHHLNLMDSTPSAATTNAVTAVNTNNG 314

Query: 235 SSAALPLLDPSSLY---STPLNSFMA-GTQFFLPPR 266
           S      +DPSSLY   +TP N+F+A GT FF   R
Sbjct: 315 S------IDPSSLYTAVATPFNAFVAGGTPFFASSR 344

The following BLAST results are available for this feature:

BLAST of Carg00608 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034109.1	8.9e-147	100.00	Protein SHI RELATED SEQUENCE 1, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]
KAG6603931.1	5.3e-107	68.58	Protein SHORT INTERNODES, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023543255.1	2.6e-106	67.88	protein SHI RELATED SEQUENCE 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022949893.1	9.3e-104	67.27	protein SHI RELATED SEQUENCE 1-like [Cucurbita moschata] >XP_022949894.1 protein...	[more]
XP_022979003.1	6.5e-97	64.24	protein SHI RELATED SEQUENCE 1-like [Cucurbita maxima] >XP_022979004.1 protein S...	[more]

BLAST of Carg00608 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SD40	2.1e-37	50.00	Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2	[more]
Q9XGX0	5.8e-32	47.57	Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1	[more]
K4B6C9	1.7e-28	51.66	Protein EXPRESSION OF TERPENOIDS 1 OS=Solanum lycopersicum OX=4081 GN=EOT1 PE=2 ...	[more]
Q9LQZ5	8.1e-26	46.63	Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1	[more]
Q9FXH7	3.4e-24	45.51	Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1	[more]

BLAST of Carg00608 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GE84	4.5e-104	67.27	protein SHI RELATED SEQUENCE 1-like OS=Cucurbita moschata OX=3662 GN=LOC11145315...	[more]
A0A6J1IUW1	3.1e-97	64.24	protein SHI RELATED SEQUENCE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111478781 ...	[more]
A0A5A7SN81	2.5e-70	52.79	Protein SHI RELATED SEQUENCE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B2J6	2.5e-70	52.79	protein SHI RELATED SEQUENCE 1 OS=Cucumis melo OX=3656 GN=LOC103485098 PE=3 SV=1	[more]
A0A0A0KGL4	2.8e-69	52.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504650 PE=3 SV=1	[more]

BLAST of Carg00608 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51060.1	1.5e-38	50.00	Lateral root primordium (LRP) protein-related	[more]
AT5G66350.1	4.1e-33	47.57	Lateral root primordium (LRP) protein-related	[more]
AT1G75520.1	5.7e-27	46.63	SHI-related sequence 5	[more]
AT1G19790.1	2.4e-25	45.51	SHI-related sequence 7	[more]
AT1G19790.2	2.4e-25	45.51	SHI-related sequence 7	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 142..189 e-value: 2.0E-27 score: 92.8
None	No IPR available	PFAM	PF05142	DUF702	coord: 85..190 e-value: 3.3E-26 score: 92.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..62
None	No IPR available	PANTHER	PTHR31604:SF4	PROTEIN SHORT INTERNODES	coord: 123..262 coord: 30..122
IPR007818	SHI protein family	PANTHER	PTHR31604	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 123..262 coord: 30..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00608-RA	Carg00608-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050794	regulation of cellular process