Carg00546 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00546
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr03: 5552899 .. 5557677 (-)
RNA-Seq ExpressionCarg00546
SyntenyCarg00546
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAACTCCAAAGATTCAATGCAGTTCTTCTATTTGATTTGGATTTCAGCTCACAGATCAATTACAGAGAAAGTGTTCTTGAAGATAGAAGAAGGATTTATACAGACTGAAAAGCACTTTTTTGGTTCAAAATCACAGCCAACATATTATCAAATTCAAGGATAGAGTTCAGTGCGCGAATGTACAGAGCCGATTTTCATCGCCGGATTTCATGAGGGGGGGAAATCACAATGCGACCAATTTTACTGAGTAATTATATTCAGAAGAGAAACTCTGGTATGAATCAATTCCCTGAACAATCCTTCTGTTCCATGTTCGATTCTTTCAATGCTCGAATCCAATCCCAACAGTCTCTCTCGAACAATCGATTGAATCTTCTCCTCCGCTTCTGCGTCTCTTCTCAACGATCCGAACTGCATCGCCTCGATCGCCATGTCCAGGTTCTCCAACTCGTTGGCTCTCTCTGCCTGATTGTTGCGTGTGATTGCTCCCTTGTGCACGAGTCTAGACACCACTGACCATCGGCTAGGTTTCGGTCTCCAGTGCACCGGCACGGCGAGGAGAGACAATAGAGAGTTGAAGATGGAGGAGGTGATGGAGCTTGCTTCTCTCAGCACTCTGATCACCGCCACCGTCACTTCGTTCTCTAATTGAAGAGGAGGAGAGGCTCCGGAGGTGTAATCCATTTGTCTGAGCGATGCGAGCGATTTCTTCAAGCTTTCATGCTTGATCTTCTTTCTCAAGCTGATATATGCAGCGATGCTGTTCTCGACGCCCGAATCTTCGTATTTGCTTCGCCGGATCGCCGATTGGAGCTGTCGAATGCTTTCTTTTATCACCAAAACAGCGTCTCTCGTATTGTCGCAGATATCCAGGAATCTTACAGAGCCATCCACCAATTCCTGCACCCAATTTTCCCGTCGGTGTGAGGCTAGGGCTTGTTGGACCAGTGGGAGGTTCAGAACCTCGTTTATGCATCTGTAGAGCTCCACCAGGCCGGAGAGAGCGCTGCAATTCGCTTCAATGCTTGAGAAGGAAGAAGAATCCAAGGATCGAAGCTTGGCTAGCTCTTGCTCGACCCGAATCGTGGATGGATGCGATCGAGCAGGTAAGCTTATACATCTATCTCTATACCGACTCCAAGGTGTTTGTGAAAATGCTACCATTGCTATTCTGTTGCAATTCTGTATGAGGGTCTAATGAGGGCAACTTGTAGATGAAATCCACAATTTCCCATCATAGCTTTATATAGGCAGAGTGGATAGAAAAAGGGGAAGTTGTTTAGGATTTGAATGTACCGAATTGAGCATGTGAAGGCGGCCAAAGATTCATCAATGGTGTGGGTTATGAAGTCACATCTTTTGCCGGCTGAAAAGTAATATTAAATTGGCATCCTTCAGTCTCCATATTTAATGGAACTTGATTTTGTTTTCATCTGGTTGAGGGGGAAGTGACTTGTTATCCCTTATTAACATCCCCCATATCTCCACCGCCACACCGCCAATTCACGCTTTTCCATGGTTGAGAGTTGAAGGTACAATAGCGTTGGAAATCGATAGCCATTAAACTAAACCTGGTAGTAAGAGTCGGCCATTAAAAAACACTTCAAGGTCCAAGGTCTAAGCTTATCACAAGTAGATGTTGTTCGTTTTTTTCTATTACGTATCGTCGTTAGCTTTACTGTTTCAAAATGCGTCTATTAGAGAGAGTTTCTACACTCTTATAAGGAATGTTTTCTTCTCACTCTCCATCCAACCGACGTAGGACCTCACAATCCACCTCCTTAGGGTTAAGCGTCCTCACTGACACACCGTCCGATATCTAGCTCTGATATCATTTGTTAGTCCAACTCCACTATTAGCAAATATCCGTTTTGGCTTCTTACATATCGTTATTAGCCTCACGGTTTTAAAATGCGCTACTAGGGAGAAGTTTCTACACCCTTATAAGAAATAGTTTGTTTTCCTCTCTAACTGACGTGGGACTTGACACTAGTCATCCCCATGGACGTTGGACCTGATTTCGTTTAACAATAGCAGTCTTTTTCCTCCTCCTATTGTTTTACACATTATATAGAAGAACTTTTAGGCTGTTTCAGGGGGAGGTTGATGTAAAGTTGACCTTGAAATGGCTCTCAAACTTCTAGAATTTATCAGGCAACTGGTCTTCCACGGGATATTGATGGAATCTGAGGTCTTGTAAATTGTTTTAGGGGTAGATTTTGGTGGTGAAATGGATTAAGGTTTCAAATCTTGGCAAGGATTGAGAGGGATTGGGAGTGGAGCCCAGATGAGATGGCTTGGGTGGGTTTGTAGAGGAGTAGAAACATGAGTTATCAATCAAATCCTCTGGGAAATGGCAGCTGGTGATGAGAGACAACTTATCATGCAAATGATTGGAGATAAGAGCATTTGGTGGGTAGTCATGGGATGGCTTTACTATTGCGTTATTTCAACTAGTGGTTGAATATTGGAAATGTCTATCAAGATTAGATAGAAAACTAGGGAAGGATACCAATTTAGTGCTTTCTTAGCCACACCATTCGTGTTTGCTATGAACTTATTCACATGTGTTGTCGAAACTCTGAGTAAACCATATTAGTTACTTTTCCTATTCAACAGTTTTACAGGCTGCATTTTGTGCAACATGTGGGAAGCTGCTTCATTAGGACTCCACTAACTTTTTTCCACTAAGATTCTAACTCATCCCTTCCACTTTAATTTCTTTTCCATTGATTACGCAAATGCAATCTTGTGGGAAGCTGCTTTAATGGAGTTTTCTTTTTCGGGGGGATGGCATTAATGAAACTACTGTTCAGAATAGAAGAGGATGAAGAGTGTTGAAAAGAATGAATTTTTCACAAACTTTTTGGTAGGTGGTGTAAGAGTCTCGCCCACTCTCACTAGCATATCGTTCGATCGTTCGATGTCTGATTTTGATATCATTTGTCATAGTCCAAGCTTACCACTAGTAGATATTGTTCTCTATGAGCTTTTACTTTCGAGGTTCTTCTCAAAATCTTTAAAACGCTTCTATTAGGGAAAAGTTTTTGCACTCTTATAAGAAATGTTTCGTTTTTCTTGTTTGAAATTCTAAGTTTGGTCTTCATTAGTATTTGCTGTTCACCCCCTACGTTTTTTTTTACGTTTTTTTTTTAGTTTTGCTGTGTGAAGGTCGATAGTTCTCTTTCTCAATTCACATGGGATCTCAATCAAGAAATTGACTCTGAAGAGAGGCACTAGGCTTGGGCAGATGAGGAATCAGGTTGGGTGGGTTAAGTTACAAGGTCCATTCAAATTGTTTGCCATGGGGACGTTAAAAGCCTACTGGCAGATTGAGTTAGATGGCTGACTGGGCTTGGAACCTCCTACTTAGAGAAGTCAAAGGTTTCACCAACCAACCCTCCACTCTTCACTTGATAATTGGAGAAGTTTGAAGAGTAGTTTGGACAAAATCTATGGTAATGTGAGTGAAAATGAAATCAAGGTGGAGATGCGAACATATTCCCCTGAACTTCATCTTTTAGAATATGTACAGATTTCTTGGGCAATCTTAGATAGAATGAAGTATTGAGTTTCCTTATAGATTCAACAAGTTTCAACTTTTAGATTTAGATGTGAATTAATATGATATTATGATGTACTCTGTTCATCCCTATCTTTTGAACCTTTTTCAGATGGTGATTGAATAAGAACACATAAAGGAAGTGATCGAACAAGCAAGAGATTTTATCATTATCAATGATTAAACTGTTATTCTTGTTTGGATCAAGAACACATAGAACACTATCGTATTATGGACATGGAATCGAGCTAACTATCCATATGGCGGATCCCTAAAAGTTGGATGCCTTTGCAGGATTCAGGGTGTCAAAAAATGGCTATGGAAATACAATACATCTCCTATTGAGATATTATGTTCAACAGAGAGGCTCTTGTTTTGATCAATCTCCTGAACACACCATCCAACCCACTCTCAATTTCTTGTGCCGCCATTTCCAAACTCTCCAATCTTCTTTGAGCAATCTGCAACTTCTCAACCTCCATTCCTTCAACAACAGAGCTCAAAGCCACATCCACGTTCTCAAATTCGTTCATGGCACTGTTTGACTCGCAGGCAATCGCCCCCTTGTGCACCCACTTGGTAACCAAAGACCATCCTCGAGCTTTTGGCTTCGTCAATGGTGTTAAGTACAACAACACGGATTCGAAAATGGAGCTGTTGGTTGAGCAAACTTGTCTCAGCGCTTCAACCACAGAGCTCAGGTGATTATCTGGATTTTGCATTGTGGATGAGTTGAATTTCTCATTCATCTTCTTCATTGACGTTATCAAGTTTTTACCTTCTTTCTTCATCTTTTTTCTATAGGAAATGTAAGCAGCAGTGGTGGTTTTCATGGCGGAATCGCCTTTCCTCCGGCGAAAGGCAGAGTGAAGAGCCCCAACATGCTGTTGGGTTTCTAATGCTATGTCCTTCGCTAAGCTGCAGACATCCAAAAGCTTCATAGAATCATCCAACAACTCGTCCACCAACTGTTTGTTTTGGGGACAAGACAAAACCTGCTGGGTGGAACCCATTTTGAGAAGCTCATCAATGGAGTCATACAAATCCTGTAATCCCAAAAGAGCACCACAAACAGAAGCAGAAGAAGAAGAAGAAGACACCCATGTCTTCACCTTCCTCAACTCCTCCTCAACCTTCACAGCACAGGGATGCAATCTAGAAGGCAAGCTTATGGACCTCGCTTGGTACTTGGCAGCCATTATTAACAACCTTCCTT

mRNA sequence

GGAACTCCAAAGATTCAATGCAGTTCTTCTATTTGATTTGGATTTCAGCTCACAGATCAATTACAGAGAAAGTGTTCTTGAAGATAGAAGAAGGATTTATACAGACTGAAAAGCACTTTTTTGGTTCAAAATCACAGCCAACATATTATCAAATTCAAGGATAGAGTTCAGTGCGCGAATGTACAGAGCCGATTTTCATCGCCGGATTTCATGAGGGGGGGAAATCACAATGCGACCAATTTTACTGAGTAATTATATTCAGAAGAGAAACTCTGGTATGAATCAATTCCCTGAACAATCCTTCTGTTCCATGTTCGATTCTTTCAATGCTCGAATCCAATCCCAACAGTCTCTCTCGAACAATCGATTGAATCTTCTCCTCCGCTTCTGCGTCTCTTCTCAACGATCCGAACTGCATCGCCTCGATCGCCATGTCCAGGTTCTCCAACTCGTTGGCTCTCTCTGCCTGATTGTTGCGTGTGATTGCTCCCTTGTGCACGAGTCTAGACACCACTGACCATCGGCTAGGTTTCGGTCTCCAGTGCACCGGCACGGCGAGGAGAGACAATAGAGAGTTGAAGATGGAGGAGGTGATGGAGCTTGCTTCTCTCAGCACTCTGATCACCGCCACCGTCACTTCGTTCTCTAATTGAAGAGGAGGAGAGGCTCCGGAGGTGTAATCCATTTGTCTGAGCGATGCGAGCGATTTCTTCAAGCTTTCATGCTTGATCTTCTTTCTCAAGCTGATATATGCAGCGATGCTGTTCTCGACGCCCGAATCTTCGTATTTGCTTCGCCGGATCGCCGATTGGAGCTGTCGAATGCTTTCTTTTATCACCAAAACAGCGTCTCTCGTATTGTCGCAGATATCCAGGAATCTTACAGAGCCATCCACCAATTCCTGCACCCAATTTTCCCGTCGGTGTGAGGCTAGGGCTTGTTGGACCAGTGGGAGGTTCAGAACCTCGTTTATGCATCTGTAGAGCTCCACCAGGCCGGAGAGAGCGCTGCAATTCGCTTCAATGCTTGAGAAGGAAGAAGAATCCAAGGATCGAAGCTTGGCTAGCTCTTGCTCGACCCGAATCGTGGATGGATGCGATCGAGCAGATGGTGATTGAATAAGAACACATAAAGGAAGTGATCGAACAAGCAAGAGATTTTATCATTATCAATGATTAAACTGTTATTCTTGTTTGGATCAAGAACACATAGAACACTATCGTATTATGGACATGGAATCGAGCTAACTATCCATATGGCGGATCCCTAAAAGTTGGATGCCTTTGCAGGATTCAGGGTGTCAAAAAATGGCTATGGAAATACAATACATCTCCTATTGAGATATTATGTTCAACAGAGAGGCTCTTGTTTTGATCAATCTCCTGAACACACCATCCAACCCACTCTCAATTTCTTGTGCCGCCATTTCCAAACTCTCCAATCTTCTTTGAGCAATCTGCAACTTCTCAACCTCCATTCCTTCAACAACAGAGCTCAAAGCCACATCCACGTTCTCAAATTCGTTCATGGCACTGTTTGACTCGCAGGCAATCGCCCCCTTGTGCACCCACTTGGTAACCAAAGACCATCCTCGAGCTTTTGGCTTCGTCAATGGTGTTAAGTACAACAACACGGATTCGAAAATGGAGCTGTTGGTTGAGCAAACTTGTCTCAGCGCTTCAACCACAGAGCTCAGGTGATTATCTGGATTTTGCATTGTGGATGAGTTGAATTTCTCATTCATCTTCTTCATTGACGTTATCAAGTTTTTACCTTCTTTCTTCATCTTTTTTCTATAGGAAATGTAAGCAGCAGTGGTGGTTTTCATGGCGGAATCGCCTTTCCTCCGGCGAAAGGCAGAGTGAAGAGCCCCAACATGCTGTTGGGTTTCTAATGCTATGTCCTTCGCTAAGCTGCAGACATCCAAAAGCTTCATAGAATCATCCAACAACTCGTCCACCAACTGTTTGTTTTGGGGACAAGACAAAACCTGCTGGGTGGAACCCATTTTGAGAAGCTCATCAATGGAGTCATACAAATCCTGTAATCCCAAAAGAGCACCACAAACAGAAGCAGAAGAAGAAGAAGAAGACACCCATGTCTTCACCTTCCTCAACTCCTCCTCAACCTTCACAGCACAGGGATGCAATCTAGAAGGCAAGCTTATGGACCTCGCTTGGTACTTGGCAGCCATTATTAACAACCTTCCTT

Coding sequence (CDS)

ATGCAGCGATGCTGTTCTCGACGCCCGAATCTTCGTATTTGCTTCGCCGGATCGCCGATTGGAGCTGTCGAATGCTTTCTTTTATCACCAAAACAGCGTCTCTCGTATTGTCGCAGATATCCAGGAATCTTACAGAGCCATCCACCAATTCCTGCACCCAATTTTCCCGTCGGTGTGAGGCTAGGGCTTGTTGGACCAGTGGGAGGTTCAGAACCTCGTTTATGCATCTGTAGAGCTCCACCAGGCCGGAGAGAGCGCTGCAATTCGCTTCAATGCTTGAGAAGGAAGAAGAATCCAAGGATCGAAGCTTGGCTAGCTCTTGCTCGACCCGAATCGTGGATGGATGCGATCGAGCAGATGGTGATTGAATAA

Protein sequence

MQRCCSRRPNLRICFAGSPIGAVECFLLSPKQRLSYCRRYPGILQSHPPIPAPNFPVGVRLGLVGPVGGSEPRLCICRAPPGRRERCNSLQCLRRKKNPRIEAWLALARPESWMDAIEQMVIE
Homology
[Close]
BLAST of Carg00546 vs. NCBI nr
Match: KAG7034048.1 (hypothetical protein SDJN02_03774 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265.4 bits (677), Expect = 2.5e-67
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0 

Query: 1   MQRCCSRRPNLRICFAGSPIGAVECFLLSPKQRLSYCRRYPGILQSHPPIPAPNFPVGVR 60
           MQRCCSRRPNLRICFAGSPIGAVECFLLSPKQRLSYCRRYPGILQSHPPIPAPNFPVGVR
Sbjct: 1   MQRCCSRRPNLRICFAGSPIGAVECFLLSPKQRLSYCRRYPGILQSHPPIPAPNFPVGVR 60

Query: 61  LGLVGPVGGSEPRLCICRAPPGRRERCNSLQCLRRKKNPRIEAWLALARPESWMDAIEQM 120
           LGLVGPVGGSEPRLCICRAPPGRRERCNSLQCLRRKKNPRIEAWLALARPESWMDAIEQM
Sbjct: 61  LGLVGPVGGSEPRLCICRAPPGRRERCNSLQCLRRKKNPRIEAWLALARPESWMDAIEQM 120

Query: 121 VIE 124
           VIE
Sbjct: 121 VIE 123

The following BLAST results are available for this feature:
BLAST of Carg00546 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034048.12.5e-67100.00hypothetical protein SDJN02_03774 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg00546 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00546 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00546 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00546-RACarg00546-RAmRNA