Carg00538 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00538
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	heterogeneous nuclear ribonucleoprotein H2 isoform X1
Location	Carg_Chr03: 5509421 .. 5510191 (+)
RNA-Seq Expression	Carg00538
Synteny	Carg00538

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGGAGCGGGGGGGTTTCGAATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGCTGGATTTCAACCTTATGGCTATGGGAGTTTTCCACCTACTCATGCCTTTCCCGTGGTTCGCCTTAGAGGACTTCCCTTCAACTGCACTGACATTGATATTTTCAAGTTCTTTGCTGGACTAGACATTGTGGATGTGCTGCTTGTCAACAAGAATGGGCGATTCATGGGAGAAGCCTTTGTTGTCTTTGCTGGATCTTTGCAGGTTGAGTTCGCGTTGCAACGGGATCGACAGAATATGGGGCGTAGATATGTAGAAGTCTTTAGCTGCAAAAGGCAGGATTATTATAATGCTGTTGCTGCTGAAGTAAATTATGAGGGCATTTATGATAATGACTACAATGGAAGTCCTCCTCCTCGACAAAAGAGGATCAGCGACAAGGACCAGATGGAATACACCGAGATACTGAAGCTGCGTGGTCTCCCCTTCTCTGTGACAAAATCCAACATCATTGAATTTTTCGGAGAGTTCGACCTTGCAGAAGAAAGGATACATATTGCAAGCCGTCCAGATGGGAAGGCTACTGGGGAGGCTTATGTGGAGTTCGCTTCAGCAGAGGATGCAAAGAGAGCAATGAGCAAGGACAAGATGACAATTGGATCGAGGTACGTGGAGTTGTTTCCTTCAACCCCAAATGAAGCTAGGAGAGCTGAGTCAAGGTCAAGACAGTGA

mRNA sequence

ATGTTGGGGAGCGGGGGGGTTTCGAATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGCTGGATTTCAACCTTATGGCTATGGGAGTTTTCCACCTACTCATGCCTTTCCCGTGGTTCGCCTTAGAGGACTTCCCTTCAACTGCACTGACATTGATATTTTCAAGTTCTTTGCTGGACTAGACATTGTGGATGTGCTGCTTGTCAACAAGAATGGGCGATTCATGGGAGAAGCCTTTGTTGTCTTTGCTGGATCTTTGCAGGTTGAGTTCGCGTTGCAACGGGATCGACAGAATATGGGGCGTAGATATGTAGAAGTCTTTAGCTGCAAAAGGCAGGATTATTATAATGCTGTTGCTGCTGAAGTAAATTATGAGGGCATTTATGATAATGACTACAATGGAAGTCCTCCTCCTCGACAAAAGAGGATCAGCGACAAGGACCAGATGGAATACACCGAGATACTGAAGCTGCGTGGTCTCCCCTTCTCTGTGACAAAATCCAACATCATTGAATTTTTCGGAGAGTTCGACCTTGCAGAAGAAAGGATACATATTGCAAGCCGTCCAGATGGGAAGGCTACTGGGGAGGCTTATGTGGAGTTCGCTTCAGCAGAGGATGCAAAGAGAGCAATGAGCAAGGACAAGATGACAATTGGATCGAGGTACGTGGAGTTGTTTCCTTCAACCCCAAATGAAGCTAGGAGAGCTGAGTCAAGGTCAAGACAGTGA

Coding sequence (CDS)

ATGTTGGGGAGCGGGGGGGTTTCGAATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGCTGGATTTCAACCTTATGGCTATGGGAGTTTTCCACCTACTCATGCCTTTCCCGTGGTTCGCCTTAGAGGACTTCCCTTCAACTGCACTGACATTGATATTTTCAAGTTCTTTGCTGGACTAGACATTGTGGATGTGCTGCTTGTCAACAAGAATGGGCGATTCATGGGAGAAGCCTTTGTTGTCTTTGCTGGATCTTTGCAGGTTGAGTTCGCGTTGCAACGGGATCGACAGAATATGGGGCGTAGATATGTAGAAGTCTTTAGCTGCAAAAGGCAGGATTATTATAATGCTGTTGCTGCTGAAGTAAATTATGAGGGCATTTATGATAATGACTACAATGGAAGTCCTCCTCCTCGACAAAAGAGGATCAGCGACAAGGACCAGATGGAATACACCGAGATACTGAAGCTGCGTGGTCTCCCCTTCTCTGTGACAAAATCCAACATCATTGAATTTTTCGGAGAGTTCGACCTTGCAGAAGAAAGGATACATATTGCAAGCCGTCCAGATGGGAAGGCTACTGGGGAGGCTTATGTGGAGTTCGCTTCAGCAGAGGATGCAAAGAGAGCAATGAGCAAGGACAAGATGACAATTGGATCGAGGTACGTGGAGTTGTTTCCTTCAACCCCAAATGAAGCTAGGAGAGCTGAGTCAAGGTCAAGACAGTGA

Protein sequence

MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEVFSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ

Homology

[Close]

BLAST of Carg00538 vs. NCBI nr
Match: KAG7034040.1 (Heterogeneous nuclear ribonucleoprotein F, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 515.8 bits (1327), Expect = 2.2e-142
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 1   MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV
Sbjct: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120

Query: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180
           FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK
Sbjct: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180

Query: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF
Sbjct: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 240

Query: 241 PSTPNEARRAESRSRQ 257
           PSTPNEARRAESRSRQ
Sbjct: 241 PSTPNEARRAESRSRQ 256

[Close]

BLAST of Carg00538 vs. NCBI nr
Match: XP_023544124.1 (heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023544125.1 heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 512.3 bits (1318), Expect = 2.4e-141
Identity = 254/256 (99.22%), Postives = 255/256 (99.61%), Query Frame = 0


Query: 1   MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVS+GYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV
Sbjct: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120

Query: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180
           FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK
Sbjct: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180

Query: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFAS EDAKRAMSKDKMTIGSRYVELF
Sbjct: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASVEDAKRAMSKDKMTIGSRYVELF 240

Query: 241 PSTPNEARRAESRSRQ 257
           PSTPNEARRAESRSRQ
Sbjct: 241 PSTPNEARRAESRSRQ 256

[Close]

BLAST of Carg00538 vs. NCBI nr
Match: XP_023544122.1 (heterogeneous nuclear ribonucleoprotein H-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023544123.1 heterogeneous nuclear ribonucleoprotein H-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 512.3 bits (1318), Expect = 2.4e-141
Identity = 254/256 (99.22%), Postives = 255/256 (99.61%), Query Frame = 0


Query: 1   MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVS+GYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 127

Query: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180
           FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK
Sbjct: 128 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFAS EDAKRAMSKDKMTIGSRYVELF
Sbjct: 188 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASVEDAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTPNEARRAESRSRQ 257
           PSTPNEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]

BLAST of Carg00538 vs. NCBI nr
Match: XP_022950265.1 (heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita moschata] >XP_022950266.1 heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita moschata] >XP_022950267.1 heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita moschata] >XP_022950268.1 heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 510.8 bits (1314), Expect = 7.0e-141
Identity = 254/256 (99.22%), Postives = 255/256 (99.61%), Query Frame = 0


Query: 1   MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVS+GYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV
Sbjct: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120

Query: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180
           FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK
Sbjct: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180

Query: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAEERIHIASR DGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF
Sbjct: 181 SNIIEFFGEFDLAEERIHIASRSDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 240

Query: 241 PSTPNEARRAESRSRQ 257
           PSTPNEARRAESRSRQ
Sbjct: 241 PSTPNEARRAESRSRQ 256

[Close]

BLAST of Carg00538 vs. NCBI nr
Match: XP_022950263.1 (heterogeneous nuclear ribonucleoprotein H-like isoform X1 [Cucurbita moschata] >XP_022950264.1 heterogeneous nuclear ribonucleoprotein H-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 510.8 bits (1314), Expect = 7.0e-141
Identity = 254/256 (99.22%), Postives = 255/256 (99.61%), Query Frame = 0


Query: 1   MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVS+GYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 127

Query: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180
           FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK
Sbjct: 128 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAEERIHIASR DGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF
Sbjct: 188 SNIIEFFGEFDLAEERIHIASRSDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTPNEARRAESRSRQ 257
           PSTPNEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]

BLAST of Carg00538 vs. ExPASy Swiss-Prot
Match: Q3US41 (Epithelial splicing regulatory protein 1 OS=Mus musculus OX=10090 GN=Esrp1 PE=1 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 3.5e-26
Identity = 74/208 (35.58%), Postives = 110/208 (52.88%), Query Frame = 0


Query: 52  VVRLRGLPFNCTDIDIFKFFAGLDIVD---VLLVNKNGRFMGEAFVVFAGSLQVEFALQR 111
           VVR RGLP+  +D DI +FF GL+I      L +N  GR  GEA V F      + ALQR
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284

Query: 112 DRQNMGRRYVEVFSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEI 171
            + +MG RY+EV+    +D+        N    +              +S ++Q+    I
Sbjct: 285 HKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQF--------------LSKENQV----I 344

Query: 172 LKLRGLPFSVTKSNIIEFFGE---FDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAM 231
           +++RGLPF+ T   ++ FFG+       +E I   + PDG+ TG+A+V FA  E A+ A+
Sbjct: 345 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 404

Query: 232 SKDKMTIGSRYVELFPSTPNEARRAESR 254
            K K  +G RY+ELF ST  E ++  +R
Sbjct: 405 RKHKELLGKRYIELFRSTAAEVQQVLNR 414

[Close]

BLAST of Carg00538 vs. ExPASy Swiss-Prot
Match: Q6NXG1 (Epithelial splicing regulatory protein 1 OS=Homo sapiens OX=9606 GN=ESRP1 PE=1 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 4.6e-26
Identity = 74/208 (35.58%), Postives = 110/208 (52.88%), Query Frame = 0


Query: 52  VVRLRGLPFNCTDIDIFKFFAGLDIVD---VLLVNKNGRFMGEAFVVFAGSLQVEFALQR 111
           VVR RGLP+  +D DI +FF GL+I      L +N  GR  GEA V F      + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285

Query: 112 DRQNMGRRYVEVFSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEI 171
            + +MG RY+EV+    +D+        N    +              +S ++Q+    I
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQF--------------LSKENQV----I 345

Query: 172 LKLRGLPFSVTKSNIIEFFGE---FDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAM 231
           +++RGLPF+ T   ++ FFG+       +E I   + PDG+ TG+A+V FA  E A+ A+
Sbjct: 346 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 405

Query: 232 SKDKMTIGSRYVELFPSTPNEARRAESR 254
            K K  +G RY+ELF ST  E ++  +R
Sbjct: 406 RKHKDLLGKRYIELFRSTAAEVQQVLNR 415

[Close]

BLAST of Carg00538 vs. ExPASy Swiss-Prot
Match: B2RYD2 (Epithelial splicing regulatory protein 1 OS=Rattus norvegicus OX=10116 GN=Esrp1 PE=2 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 4.6e-26
Identity = 74/208 (35.58%), Postives = 110/208 (52.88%), Query Frame = 0


Query: 52  VVRLRGLPFNCTDIDIFKFFAGLDIVD---VLLVNKNGRFMGEAFVVFAGSLQVEFALQR 111
           VVR RGLP+  +D DI +FF GL+I      L +N  GR  GEA V F      + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285

Query: 112 DRQNMGRRYVEVFSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEI 171
            + +MG RY+EV+    +D+        N    +              +S ++Q+    I
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQF--------------LSKENQV----I 345

Query: 172 LKLRGLPFSVTKSNIIEFFGE---FDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAM 231
           +++RGLPF+ T   ++ FFG+       +E I   + PDG+ TG+A+V FA  E A+ A+
Sbjct: 346 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 405

Query: 232 SKDKMTIGSRYVELFPSTPNEARRAESR 254
            K K  +G RY+ELF ST  E ++  +R
Sbjct: 406 RKHKDLLGKRYIELFRSTAAEVQQVLNR 415

[Close]

BLAST of Carg00538 vs. ExPASy Swiss-Prot
Match: Q5E9J1 (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 119.4 bits (298), Expect = 6.0e-26
Identity = 74/202 (36.63%), Postives = 106/202 (52.48%), Query Frame = 0


Query: 52  VVRLRGLPFNCTDIDIFKFFAGLDIVDVL-----LVNKNGRFMGEAFVVFAGSLQVEFAL 111
           VV+LRGLP++C+  D+  F +   I D +     +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 112 QRDRQNMGRRYVEVFSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYT 171
           ++DR++MG RY+EVF   R +               D     S P      +D       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTE--------------MDWVLKHSGPNSADTAND------- 131

Query: 172 EILKLRGLPFSVTKSNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMS 231
             ++LRGLPF  TK  II+FF   ++    I +   P+GK TGEA+V+FAS E A++A+ 
Sbjct: 132 GFVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 232 KDKMTIGSRYVELFPSTPNEAR 249
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]

BLAST of Carg00538 vs. ExPASy Swiss-Prot
Match: P52597 (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 119.0 bits (297), Expect = 7.8e-26
Identity = 73/202 (36.14%), Postives = 105/202 (51.98%), Query Frame = 0


Query: 52  VVRLRGLPFNCTDIDIFKFFAGLDIVD-----VLLVNKNGRFMGEAFVVFAGSLQVEFAL 111
           VV+LRGLP++C+  D+  F +   I D       +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 112 QRDRQNMGRRYVEVFSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYT 171
           ++DR++MG RY+EVF   R +               D     S P      +D       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTE--------------MDWVLKHSGPNSADSAND------- 131

Query: 172 EILKLRGLPFSVTKSNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMS 231
             ++LRGLPF  TK  I++FF   ++    I +   P+GK TGEA+V+FAS E A++A+ 
Sbjct: 132 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 232 KDKMTIGSRYVELFPSTPNEAR 249
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]

BLAST of Carg00538 vs. ExPASy TrEMBL
Match: A0A6J1GEF2 (heterogeneous nuclear ribonucleoprotein H-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453406 PE=4 SV=1)

HSP 1 Score: 510.8 bits (1314), Expect = 3.4e-141
Identity = 254/256 (99.22%), Postives = 255/256 (99.61%), Query Frame = 0


Query: 1   MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVS+GYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 127

Query: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180
           FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK
Sbjct: 128 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAEERIHIASR DGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF
Sbjct: 188 SNIIEFFGEFDLAEERIHIASRSDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTPNEARRAESRSRQ 257
           PSTPNEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]

BLAST of Carg00538 vs. ExPASy TrEMBL
Match: A0A6J1GF84 (heterogeneous nuclear ribonucleoprotein H-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453406 PE=4 SV=1)

HSP 1 Score: 510.8 bits (1314), Expect = 3.4e-141
Identity = 254/256 (99.22%), Postives = 255/256 (99.61%), Query Frame = 0


Query: 1   MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVS+GYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV
Sbjct: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120

Query: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180
           FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK
Sbjct: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180

Query: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAEERIHIASR DGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF
Sbjct: 181 SNIIEFFGEFDLAEERIHIASRSDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 240

Query: 241 PSTPNEARRAESRSRQ 257
           PSTPNEARRAESRSRQ
Sbjct: 241 PSTPNEARRAESRSRQ 256

[Close]

BLAST of Carg00538 vs. ExPASy TrEMBL
Match: A0A6J1IJJ3 (heterogeneous nuclear ribonucleoprotein H-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477672 PE=4 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 1.3e-140
Identity = 252/256 (98.44%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVS+GY+VGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYKVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 127

Query: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180
           FSCKRQDYYNAVAAEVNYEGIY+NDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK
Sbjct: 128 FSCKRQDYYNAVAAEVNYEGIYNNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAE+AKRAMSKDKMTIGSRYVELF
Sbjct: 188 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTPNEARRAESRSRQ 257
           PSTPNEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]

BLAST of Carg00538 vs. ExPASy TrEMBL
Match: A0A6J1IR18 (heterogeneous nuclear ribonucleoprotein H-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477672 PE=4 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 1.3e-140
Identity = 252/256 (98.44%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVS+GY+VGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 1   MLGSGGVSDGYKVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV
Sbjct: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120

Query: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180
           FSCKRQDYYNAVAAEVNYEGIY+NDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK
Sbjct: 121 FSCKRQDYYNAVAAEVNYEGIYNNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180

Query: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAE+AKRAMSKDKMTIGSRYVELF
Sbjct: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 240

Query: 241 PSTPNEARRAESRSRQ 257
           PSTPNEARRAESRSRQ
Sbjct: 241 PSTPNEARRAESRSRQ 256

[Close]

BLAST of Carg00538 vs. ExPASy TrEMBL
Match: A0A0A0KJN7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G509630 PE=4 SV=1)

HSP 1 Score: 504.6 bits (1298), Expect = 2.4e-139
Identity = 249/256 (97.27%), Postives = 254/256 (99.22%), Query Frame = 0


Query: 1   MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVS+GYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGS+QVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 127

Query: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180
           F CKRQDYYNAVAAEVNYEGIYDNDY+GSPPPRQKR SDKDQMEYTEILKLRGLPFSVTK
Sbjct: 128 FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAE+RIHIASRPDGKATGEAYVEFASAE+AKRAMSKDKMTIGSRYVELF
Sbjct: 188 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTPNEARRAESRSRQ 257
           PSTPNEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]

BLAST of Carg00538 vs. TAIR 10
Match: AT5G66010.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 339.7 bits (870), Expect = 2.0e-93
Identity = 173/263 (65.78%), Postives = 204/263 (77.57%), Query Frame = 0


Query: 1   MLGSGGV---SNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRG 60
           M GS G    S GYEVGSKRQRMM+ NPY AV +    F P+GY        FPVVRLRG
Sbjct: 1   MYGSRGAMFGSGGYEVGSKRQRMMQSNPYLAVGTGPTSFPPFGYAG-----GFPVVRLRG 60

Query: 61  LPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRY 120
           LPFNC DIDIF+FFAGL+IVDVLLV+KNG+F GEAFVVFAG +QVE ALQRDR NMGRRY
Sbjct: 61  LPFNCADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRY 120

Query: 121 VEVFSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPP----RQKRISDKDQMEYTEILKLRG 180
           VEVF C +QDYYNAVAAE   EG Y+ +   SPPP    R KR S+K+++EYTE+LK+RG
Sbjct: 121 VEVFRCSKQDYYNAVAAE---EGAYEYEVRASPPPTGPSRAKRFSEKEKLEYTEVLKMRG 180

Query: 181 LPFSVTKSNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIG 240
           LP+SV K  IIEFF  + + + R+ +  RPDGKATGEA+VEF + E+A+RAM+KDKM+IG
Sbjct: 181 LPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIG 240

Query: 241 SRYVELFPSTPNEARRAESRSRQ 257
           SRYVELFP+T  EARRAE+RSRQ
Sbjct: 241 SRYVELFPTTREEARRAEARSRQ 255

[Close]

BLAST of Carg00538 vs. TAIR 10
Match: AT3G20890.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 234.2 bits (596), Expect = 1.2e-61
Identity = 130/288 (45.14%), Postives = 180/288 (62.50%), Query Frame = 0


Query: 3   GSGGVSNGYEVGSKRQRMME---PNPYFAV-SSSTAGFQPYGYGSFPPTHAFPVVRLRGL 62
           G G   +G E+G KRQRM++   P P++    SS   + PYG+ + PP   FP VRLRGL
Sbjct: 5   GYGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYNPYGFVAPPPPPPFPAVRLRGL 64

Query: 63  PFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYV 122
           PF+C ++D+ +FF GLD+VDVL V++N +  GEAF V    LQV+FALQ++RQNMGRRYV
Sbjct: 65  PFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYV 124

Query: 123 EVFSCKRQDYYNAVAAEVNYEGIY--------------------------DNDYNGSPPP 182
           EVF   +Q+YY A+A EV    ++                               GS P 
Sbjct: 125 EVFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRISGGSSPR 184

Query: 183 R---QKRISD--KDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEERIHIASRPDGKA 242
           R   + R SD  K+ +E+T IL+LRGLPFS  K +I++FF +F+L+E+ +H+    +G+ 
Sbjct: 185 RHVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRP 244

Query: 243 TGEAYVEFASAEDAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSR 256
           TGEA+VEF +AED++ AM KD+ T+GSRY+ELFPS+  E   A SR R
Sbjct: 245 TGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292

[Close]

BLAST of Carg00538 vs. TAIR 10
Match: AT5G66010.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 209.1 bits (531), Expect = 4.1e-54
Identity = 104/161 (64.60%), Postives = 128/161 (79.50%), Query Frame = 0


Query: 100 LQVEFALQRDRQNMGRRYVEVFSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPP----RQK 159
           +QVE ALQRDR NMGRRYVEVF C +QDYYNAVAAE   EG Y+ +   SPPP    R K
Sbjct: 1   MQVEIALQRDRHNMGRRYVEVFRCSKQDYYNAVAAE---EGAYEYEVRASPPPTGPSRAK 60

Query: 160 RISDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEF 219
           R S+K+++EYTE+LK+RGLP+SV K  IIEFF  + + + R+ +  RPDGKATGEA+VEF
Sbjct: 61  RFSEKEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEF 120

Query: 220 ASAEDAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ 257
            + E+A+RAM+KDKM+IGSRYVELFP+T  EARRAE+RSRQ
Sbjct: 121 ETGEEARRAMAKDKMSIGSRYVELFPTTREEARRAEARSRQ 158

[Close]

BLAST of Carg00538 vs. TAIR 10
Match: AT4G36960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-06
Identity = 28/85 (32.94%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 169 LKLRGLPFSVTKSNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKD 228
           L + G+P+ +    + ++  +F   E+ I +  R  G++ G  YV FASAEDAK A+ K 
Sbjct: 5   LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL-KG 64

Query: 229 KMTIGSRYVELFPSTPNEARRAESR 254
           +  +G+R +E+  +TP E  R  ++
Sbjct: 65  EHFLGNRILEVKVATPKEEMRQPAK 88

[Close]

BLAST of Carg00538 vs. TAIR 10
Match: AT4G36960.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-06
Identity = 28/85 (32.94%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 169 LKLRGLPFSVTKSNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKD 228
           L + G+P+ +    + ++  +F   E+ I +  R  G++ G  YV FASAEDAK A+ K 
Sbjct: 5   LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL-KG 64

Query: 229 KMTIGSRYVELFPSTPNEARRAESR 254
           +  +G+R +E+  +TP E  R  ++
Sbjct: 65  EHFLGNRILEVKVATPKEEMRQPAK 88

The following BLAST results are available for this feature:

BLAST of Carg00538 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034040.1	2.2e-142	100.00	Heterogeneous nuclear ribonucleoprotein F, partial [Cucurbita argyrosperma subsp...	[more]
XP_023544124.1	2.4e-141	99.22	heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita pepo subsp....	[more]
XP_023544122.1	2.4e-141	99.22	heterogeneous nuclear ribonucleoprotein H-like isoform X1 [Cucurbita pepo subsp....	[more]
XP_022950265.1	7.0e-141	99.22	heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita moschata] >...	[more]
XP_022950263.1	7.0e-141	99.22	heterogeneous nuclear ribonucleoprotein H-like isoform X1 [Cucurbita moschata] >...	[more]

BLAST of Carg00538 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3US41	3.5e-26	35.58	Epithelial splicing regulatory protein 1 OS=Mus musculus OX=10090 GN=Esrp1 PE=1 ...	[more]
Q6NXG1	4.6e-26	35.58	Epithelial splicing regulatory protein 1 OS=Homo sapiens OX=9606 GN=ESRP1 PE=1 S...	[more]
B2RYD2	4.6e-26	35.58	Epithelial splicing regulatory protein 1 OS=Rattus norvegicus OX=10116 GN=Esrp1 ...	[more]
Q5E9J1	6.0e-26	36.63	Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 S...	[more]
P52597	7.8e-26	36.14	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1...	[more]

BLAST of Carg00538 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GEF2	3.4e-141	99.22	heterogeneous nuclear ribonucleoprotein H-like isoform X1 OS=Cucurbita moschata ...	[more]
A0A6J1GF84	3.4e-141	99.22	heterogeneous nuclear ribonucleoprotein H-like isoform X2 OS=Cucurbita moschata ...	[more]
A0A6J1IJJ3	1.3e-140	98.44	heterogeneous nuclear ribonucleoprotein H-like isoform X1 OS=Cucurbita maxima OX...	[more]
A0A6J1IR18	1.3e-140	98.44	heterogeneous nuclear ribonucleoprotein H-like isoform X2 OS=Cucurbita maxima OX...	[more]
A0A0A0KJN7	2.4e-139	97.27	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G509630 PE=4 SV...	[more]

BLAST of Carg00538 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66010.1	2.0e-93	65.78	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20890.1	1.2e-61	45.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G66010.2	4.1e-54	64.60	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G36960.1	1.1e-06	32.94	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G36960.2	1.1e-06	32.94	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 52..121 e-value: 2.5E-5 score: 33.7 coord: 168..240 e-value: 7.6E-9 score: 45.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 54..116 e-value: 5.3E-6 score: 26.2 coord: 171..237 e-value: 2.4E-9 score: 36.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 167..244 score: 10.360188
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 49..134 e-value: 1.4E-22 score: 81.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 152..256 e-value: 8.3E-30 score: 104.9
None	No IPR available	PANTHER	PTHR13976:SF71	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 3..256
None	No IPR available	PANTHER	PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	coord: 3..256
None	No IPR available	CDD	cd12254	RRM_hnRNPH_ESRPs_RBM12_like	coord: 52..121 e-value: 2.45273E-24 score: 90.6943
None	No IPR available	CDD	cd12254	RRM_hnRNPH_ESRPs_RBM12_like	coord: 168..240 e-value: 3.11713E-29 score: 103.406
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 166..253
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 45..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00538-RA	Carg00538-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding