Carg00421 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00421
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Transcription initiation factor IIA subunit 2
Location	Carg_Chr04: 7177466 .. 7179158 (+)
RNA-Seq Expression	Carg00421
Synteny	Carg00421

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTTCTTCGCTCGCGAAAAGCATTTGGAGCTAACGTTAACCCAGTTAGAATCAAAGAAACCAGAAGCATCACAAACTCACTTTCAATCCGTAGCTACAATTCGTTGCTCTTGTACTCTTTCTCTTTATTATTATTTTCTCATTCCTTTTCGAATTGATTTCTCGCTTTAATTTCGAAGATTTTGCCTGCTTTCTCGAATTTTGACGCTATGTTTCAAATTTTCATTTAGTTTTGTCAATTACGGATGTGCTCTGTTGAACTAAATTTGATATCTTAGCCGAAGAACTTCCATATGTTGCAGATCTTGTTTTTCGAAGAAGAATGGCAACGTTTGAACTCTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAGGTTCTTGTGCAGTTCGATAAGGTATAGTTAAAGCTGGTTCAGAGATGTTTTTATGTGTATATTTTGGATTCGTGTTCGAAATTGAGGTCTTGTTTGATTTAATTTCGTAGCGCTTTTGGTTTTTTGCAGTCCATGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGACTGTCAAGGTATGTTTGTTCGGCTTATGAATTTGATTGCATCTTTGAATGCCAGAGATTTATGCTGCGAAGTAAAGACATTATAAACTTGAAACGTGTTTTTACTAAGAGGAATTAGTTGTGTTTGCCTGTTCTGAGATACTTCTGTTTGTGCTCTATTGCACGTCAAGCCTTAACATGAATGTATAGTACAATTTTTTCCCCATGATCTTTTGGTTGCCCGAAGTGAATGAAGAACCACGATAAAGAAAACATATTACCTACGGCATAGAAACATTTGCATTCGAAAGTTCGAAGTTTAGATTGTGGAACATTTGATCTAATTCTAAATGGATTAGATTACTTCATTGATTCTTCAAGCGTTTTCCAGCATAAAATATTGCAGCTTGAATAAGTTTCTCTGGAATAAACTTGGTAATTATTTGTACATTTGAATCTGGGGATAAAGTAATCGATGCAATTAGAGATTTAAGCCGGTGCATCAATTGCTTCTACAATCAGTCTTTCCTTCAAGTTATATATTCAATCCAATGGCTGTTGGATTTTCTCATGATACTCTTGAAAGTTCGTCGTGATTGTATGAGAACCATGGATGAGATCACAATCACGTCAATATTTGAGGAGTTATATAATTAACACTTTGGTTGATTTCTGAGCCTCTTTGTCCTATTGTATTGCAACAGGGACATCTGCATACCTATCGATTCTGCGACAACGTTTGGACGTTCATTTTGCAGGATGCAACGTTCAAGAACGAGGATTCCCAGGAGACTGTCGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTCACACAATAAGCTGTTCCAGATACCACTTTATTAGATGAAGTTTCCATTATTATTTGCTGATGATTGAGGGAAATAGTCACGATGAGAGGAGATGGCCATCAAGGCTGTGCTTCATGTTGCAAGTTTGGAAAAGATTCAAATGTGATTCTGTAAAGCTACTTTCACGCACATTAACATTACCTTTGATCTTAATTGGCTTCCAAAGCCAGGTTCATGACAATTATACAACCCTTCTAGTTGAATGATAATAAAACACGAGATATCTGTTTTAACATT

mRNA sequence

AAATTTCTTCGCTCGCGAAAAGCATTTGGAGCTAACGTTAACCCAGTTAGAATCAAAGAAACCAGAAGCATCACAAACTCACTTTCAATCCATCTTGTTTTTCGAAGAAGAATGGCAACGTTTGAACTCTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAGGTTCTTGTGCAGTTCGATAAGTCCATGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGACTGTCAAGGGACATCTGCATACCTATCGATTCTGCGACAACGTTTGGACGTTCATTTTGCAGGATGCAACGTTCAAGAACGAGGATTCCCAGGAGACTGTCGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTCACACAATAAGCTGATGAAGTTTCCATTATTATTTGCTGATGATTGAGGGAAATAGTCACGATGAGAGGAGATGGCCATCAAGGCTGTGCTTCATGTTGCAAGTTTGGAAAAGATTCAAATGTGATTCTGTAAAGCTACTTTCACGCACATTAACATTACCTTTGATCTTAATTGGCTTCCAAAGCCAGGTTCATGACAATTATACAACCCTTCTAGTTGAATGATAATAAAACACGAGATATCTGTTTTAACATT

Coding sequence (CDS)

ATGGCAACGTTTGAACTCTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAGGTTCTTGTGCAGTTCGATAAGTCCATGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGACTGTCAAGGGACATCTGCATACCTATCGATTCTGCGACAACGTTTGGACGTTCATTTTGCAGGATGCAACGTTCAAGAACGAGGATTCCCAGGAGACTGTCGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTCACACAATAA

Protein sequence

MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ

Homology

[Close]

BLAST of Carg00421 vs. NCBI nr
Match: KAG7031763.1 (Transcription initiation factor IIA subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213.0 bits (541), Expect = 1.3e-51
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of Carg00421 vs. NCBI nr
Match: XP_022941425.1 (transcription initiation factor IIA subunit 2-like [Cucurbita moschata] >XP_022981079.1 transcription initiation factor IIA subunit 2-like [Cucurbita maxima] >XP_023525811.1 transcription initiation factor IIA subunit 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.6 bits (540), Expect = 1.6e-51
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of Carg00421 vs. NCBI nr
Match: KAG6608125.1 (Transcription initiation factor IIA subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 212.6 bits (540), Expect = 1.6e-51
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+K
Sbjct: 617 MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 676

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Sbjct: 677 GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 722

[Close]

BLAST of Carg00421 vs. NCBI nr
Match: XP_022936677.1 (transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022936678.1 transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022975864.1 transcription initiation factor IIA subunit 2 [Cucurbita maxima] >XP_023536591.1 transcription initiation factor IIA subunit 2 [Cucurbita pepo subsp. pepo] >XP_023536592.1 transcription initiation factor IIA subunit 2 [Cucurbita pepo subsp. pepo] >KAG7024584.1 Transcription initiation factor IIA subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.1 bits (536), Expect = 4.8e-51
Identity = 104/106 (98.11%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of Carg00421 vs. NCBI nr
Match: XP_038897043.1 (transcription initiation factor IIA subunit 2 [Benincasa hispida])

HSP 1 Score: 207.6 bits (527), Expect = 5.3e-50
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDS E+VGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSSESVGRIKIVACDSKLLSQ 106

[Close]

BLAST of Carg00421 vs. ExPASy Swiss-Prot
Match: Q39236 (Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN=TFIIA-S PE=3 SV=2)

HSP 1 Score: 196.1 bits (497), Expect = 2.1e-49
Identity = 95/106 (89.62%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FK++D QE V R+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]

BLAST of Carg00421 vs. ExPASy Swiss-Prot
Match: A2XZI2 (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=39946 GN=TFIIAy PE=3 SV=2)

HSP 1 Score: 190.3 bits (482), Expect = 1.1e-47
Identity = 91/106 (85.85%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]

BLAST of Carg00421 vs. ExPASy Swiss-Prot
Match: Q0DLD3 (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TFIIAy PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.1e-47
Identity = 91/106 (85.85%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]

BLAST of Carg00421 vs. ExPASy Swiss-Prot
Match: O74948 (Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=toa2 PE=3 SV=2)

HSP 1 Score: 120.9 bits (302), Expect = 8.5e-27
Identity = 53/99 (53.54%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHL 63
           +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S++T KGHL
Sbjct: 5   YELYRRSSIGISLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFKGHL 64

Query: 64  HTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSK 103
            TYRFCD VWTFI+++ +F+ ++   T  +I+IVAC ++
Sbjct: 65  DTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVACATR 103

[Close]

BLAST of Carg00421 vs. ExPASy Swiss-Prot
Match: Q54ND1 (Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum OX=44689 GN=gtf2a2 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.7e-25
Identity = 56/101 (55.45%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHL 63
           +ELYR+STIG  LT+TL+E++ N  +S  L  ++L QFDK++ EAL + VK+K T KG L
Sbjct: 8   YELYRKSTIGEALTDTLEELLINQYISNSLYQKILTQFDKTINEALSNTVKAKTTFKGSL 67

Query: 64  HTYRFCDNVWTFILQDATFKNEDSQ-ETVGRIKIVACDSKL 104
           HTYRFCD+VWTFIL++A FK E ++   V R+KIVACD+ +
Sbjct: 68  HTYRFCDSVWTFILENAQFKTEANEIVKVDRVKIVACDANV 108

[Close]

BLAST of Carg00421 vs. ExPASy TrEMBL
Match: A0A6J1J100 (Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111480333 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 7.9e-52
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of Carg00421 vs. ExPASy TrEMBL
Match: A0A6J1FTM1 (Transcription initiation factor IIA subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111446721 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 7.9e-52
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of Carg00421 vs. ExPASy TrEMBL
Match: A0A6J1F935 (Transcription initiation factor IIA subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111443199 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.3e-51
Identity = 104/106 (98.11%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of Carg00421 vs. ExPASy TrEMBL
Match: A0A6J1ILT9 (Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111476437 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.3e-51
Identity = 104/106 (98.11%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of Carg00421 vs. ExPASy TrEMBL
Match: A0A6J1BWA2 (Transcription initiation factor IIA subunit 2 OS=Momordica charantia OX=3673 GN=LOC111006284 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.5e-50
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 106

[Close]

BLAST of Carg00421 vs. TAIR 10
Match: AT4G24440.1 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) )

HSP 1 Score: 196.1 bits (497), Expect = 1.5e-50
Identity = 95/106 (89.62%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FK++D QE V R+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]

BLAST of Carg00421 vs. TAIR 10
Match: AT4G24440.2 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) )

HSP 1 Score: 196.1 bits (497), Expect = 1.5e-50
Identity = 95/106 (89.62%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FK++D QE V R+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

The following BLAST results are available for this feature:

BLAST of Carg00421 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031763.1	1.3e-51	100.00	Transcription initiation factor IIA subunit 2 [Cucurbita argyrosperma subsp. arg...	[more]
XP_022941425.1	1.6e-51	99.06	transcription initiation factor IIA subunit 2-like [Cucurbita moschata] >XP_0229...	[more]
KAG6608125.1	1.6e-51	99.06	Transcription initiation factor IIA subunit 2, partial [Cucurbita argyrosperma s...	[more]
XP_022936677.1	4.8e-51	98.11	transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022936678...	[more]
XP_038897043.1	5.3e-50	96.23	transcription initiation factor IIA subunit 2 [Benincasa hispida]	[more]

BLAST of Carg00421 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39236	2.1e-49	89.62	Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN...	[more]
A2XZI2	1.1e-47	85.85	Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=3...	[more]
Q0DLD3	1.1e-47	85.85	Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX...	[more]
O74948	8.5e-27	53.54	Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (stra...	[more]
Q54ND1	4.7e-25	55.45	Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum OX=446...	[more]

BLAST of Carg00421 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J100	7.9e-52	99.06	Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1FTM1	7.9e-52	99.06	Transcription initiation factor IIA subunit 2 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1F935	2.3e-51	98.11	Transcription initiation factor IIA subunit 2 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1ILT9	2.3e-51	98.11	Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1BWA2	2.5e-50	96.23	Transcription initiation factor IIA subunit 2 OS=Momordica charantia OX=3673 GN=...	[more]

BLAST of Carg00421 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24440.1	1.5e-50	89.62	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)	[more]
AT4G24440.2	1.5e-50	89.62	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003194	Transcription initiation factor IIA, gamma subunit	PIRSF	PIRSF009415	TFIIA_gamma_hum	coord: 1..106 e-value: 1.8E-49 score: 164.4
IPR003194	Transcription initiation factor IIA, gamma subunit	PANTHER	PTHR10966	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	coord: 1..106
IPR015871	Transcription initiation factor IIA, gamma subunit, C-terminal	PFAM	PF02751	TFIIA_gamma_C	coord: 60..101 e-value: 7.3E-22 score: 77.3
IPR015871	Transcription initiation factor IIA, gamma subunit, C-terminal	CDD	cd10014	TFIIA_gamma_C	coord: 57..102 e-value: 7.08946E-23 score: 81.5251
IPR009088	Transcription factor IIA, beta-barrel	GENE3D	2.30.18.10		coord: 55..105 e-value: 2.1E-23 score: 83.9
IPR009088	Transcription factor IIA, beta-barrel	SUPERFAMILY	50784	Transcription factor IIA (TFIIA), beta-barrel domain	coord: 52..102
IPR015872	Transcription initiation factor IIA, gamma subunit, N-terminal	PFAM	PF02268	TFIIA_gamma_N	coord: 4..49 e-value: 1.1E-22 score: 79.8
IPR015872	Transcription initiation factor IIA, gamma subunit, N-terminal	CDD	cd10145	TFIIA_gamma_N	coord: 4..49 e-value: 2.64473E-22 score: 79.9172
IPR009083	Transcription factor IIA, alpha-helical domain	GENE3D	1.10.287.190		coord: 3..54 e-value: 3.1E-24 score: 86.6
None	No IPR available	PANTHER	PTHR10966:SF8	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	coord: 1..106
None	No IPR available	SUPERFAMILY	47396	Transcription factor IIA (TFIIA), alpha-helical domain	coord: 4..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00421-RA	Carg00421-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051123	RNA polymerase II preinitiation complex assembly
biological_process	GO:0006413	translational initiation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0005672	transcription factor TFIIA complex
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity
molecular_function	GO:0017025	TBP-class protein binding
molecular_function	GO:0003743	translation initiation factor activity