Carg00410 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00410
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHydroxyproline-rich glycoprotein
LocationCarg_Chr04: 7100891 .. 7101425 (-)
RNA-Seq ExpressionCarg00410
SyntenyCarg00410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTATGATTACGGCGAAGCACAGGATCCTGTCCCTCTGAGCCTTCCGGTTGGTTTGGTTCTTTTGTTCACATTTTTGCTCTGCATGTGATGTTTTTATTATTGTTGCCTTCACTGGGAAAAGCTCCGATCATTTCTCGGCCACCGCTATCCTCCCCTTCCGCCGGTAAACACCACCTTCTCGCCGCCCGACAAAATTTCCCCGCTCCATACGGTGCGTTTTGTTCCTTCTACTTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTATGTAATTTAATAATTTATGGCGAAATTGAAAAAAACCACTTATAAATCTGAGAATTGTTTGATTTTCTTTATATTTTGGGTATTAGAAGACATGGAAGGAGAATCCGGCGCAGAGCTTGTCGGTTTTGATGCCCGGCGACGAGGTTCCAAGGTTTATAGCAATGGCATGTCCGCCGTGTGCGGCGGCGTTGGTGGAGGTTGAAGAACAGAAACCTTTACGGTGTATTCCGGATTCTTCTGGAGTTCTGTCTTTAAGTTAG

mRNA sequence

ATGGAGTATGATTACGGCGAAGCACAGGATCCTGTCCCTCTGAGCCTTCCGCTCCGATCATTTCTCGGCCACCGCTATCCTCCCCTTCCGCCGGTAAACACCACCTTCTCGCCGCCCGACAAAATTTCCCCGCTCCATACGAAGACATGGAAGGAGAATCCGGCGCAGAGCTTGTCGGTTTTGATGCCCGGCGACGAGGTTCCAAGGTTTATAGCAATGGCATGTCCGCCGTGTGCGGCGGCGTTGGTGGAGGTTGAAGAACAGAAACCTTTACGGTGTATTCCGGATTCTTCTGGAGTTCTGTCTTTAAGTTAG

Coding sequence (CDS)

ATGGAGTATGATTACGGCGAAGCACAGGATCCTGTCCCTCTGAGCCTTCCGCTCCGATCATTTCTCGGCCACCGCTATCCTCCCCTTCCGCCGGTAAACACCACCTTCTCGCCGCCCGACAAAATTTCCCCGCTCCATACGAAGACATGGAAGGAGAATCCGGCGCAGAGCTTGTCGGTTTTGATGCCCGGCGACGAGGTTCCAAGGTTTATAGCAATGGCATGTCCGCCGTGTGCGGCGGCGTTGGTGGAGGTTGAAGAACAGAAACCTTTACGGTGTATTCCGGATTCTTCTGGAGTTCTGTCTTTAAGTTAG

Protein sequence

MEYDYGEAQDPVPLSLPLRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIPDSSGVLSLS
Homology
[Close]
BLAST of Carg00410 vs. NCBI nr
Match: KAG7031753.1 (hypothetical protein SDJN02_05794, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.8 bits (556), Expect = 2.2e-53
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MEYDYGEAQDPVPLSLPLRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSV 60
           MEYDYGEAQDPVPLSLPLRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSV
Sbjct: 1   MEYDYGEAQDPVPLSLPLRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSV 60

Query: 61  LMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIPDSSGVLSLS 105
           LMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIPDSSGVLSLS
Sbjct: 61  LMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIPDSSGVLSLS 104

[Close]
BLAST of Carg00410 vs. NCBI nr
Match: XP_022940470.1 (uncharacterized protein At5g65660-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 199.5 bits (506), Expect = 1.4e-47
Identity = 101/128 (78.91%), Postives = 101/128 (78.91%), Query Frame = 0 

Query: 1   MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTT 60
           MEYDYGEAQDPVPLSLP                         LRS LGHRYPPLPPVNTT
Sbjct: 1   MEYDYGEAQDPVPLSLPVGLVLLFTFLLCMCCFYYCCLHWEKLRSLLGHRYPPLPPVNTT 60

Query: 61  FSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIP 104
           FSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIP
Sbjct: 61  FSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIP 120

[Close]
BLAST of Carg00410 vs. NCBI nr
Match: XP_022940471.1 (uncharacterized protein At5g65660-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 193.0 bits (489), Expect = 1.3e-45
Identity = 100/128 (78.12%), Postives = 100/128 (78.12%), Query Frame = 0 

Query: 1   MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTT 60
           MEYDYGEAQDPVPLSLP                         LRS LGHRYPPLPPVNTT
Sbjct: 1   MEYDYGEAQDPVPLSLPVGLVLLFTFLLCMCCFYYCCLHWEKLRSLLGHRYPPLPPVNTT 60

Query: 61  FSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIP 104
           FSPPDKISPLHT TWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIP
Sbjct: 61  FSPPDKISPLHT-TWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIP 120

[Close]
BLAST of Carg00410 vs. NCBI nr
Match: XP_022981074.1 (uncharacterized protein At5g65660-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 178.3 bits (451), Expect = 3.3e-41
Identity = 92/128 (71.88%), Postives = 94/128 (73.44%), Query Frame = 0 

Query: 1   MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTT 60
           MEYDYGEAQDPVPLSLP                         LRS +GHRYPPL PVNT 
Sbjct: 1   MEYDYGEAQDPVPLSLPVGLVLLFTFLLCMCCFFSCCLHWEKLRSLIGHRYPPLLPVNTA 60

Query: 61  FSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIP 104
           FSPPDKISP+HTK WKE PAQSLSVLMPGDEVPRFIAMACPPCAAALV VEEQKP R IP
Sbjct: 61  FSPPDKISPVHTKIWKETPAQSLSVLMPGDEVPRFIAMACPPCAAALVVVEEQKPSRSIP 120

[Close]
BLAST of Carg00410 vs. NCBI nr
Match: XP_023525689.1 (uncharacterized protein At5g65660-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.5 bits (441), Expect = 4.8e-40
Identity = 88/115 (76.52%), Postives = 88/115 (76.52%), Query Frame = 0 

Query: 1   MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTT 60
           MEYDYGEAQDPVPLSLP                         LRS LGHRYPP PPVNTT
Sbjct: 1   MEYDYGEAQDPVPLSLPVGLVLLFTFLLCMCCFYYCCLHWEKLRSLLGHRYPPFPPVNTT 60

Query: 61  FSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKP 91
           FSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKP
Sbjct: 61  FSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKP 115

[Close]
BLAST of Carg00410 vs. ExPASy TrEMBL
Match: A0A6J1FQN2 (uncharacterized protein At5g65660-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446057 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.8e-48
Identity = 101/128 (78.91%), Postives = 101/128 (78.91%), Query Frame = 0 

Query: 1   MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTT 60
           MEYDYGEAQDPVPLSLP                         LRS LGHRYPPLPPVNTT
Sbjct: 1   MEYDYGEAQDPVPLSLPVGLVLLFTFLLCMCCFYYCCLHWEKLRSLLGHRYPPLPPVNTT 60

Query: 61  FSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIP 104
           FSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIP
Sbjct: 61  FSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIP 120

[Close]
BLAST of Carg00410 vs. ExPASy TrEMBL
Match: A0A6J1FIK1 (uncharacterized protein At5g65660-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446057 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 6.4e-46
Identity = 100/128 (78.12%), Postives = 100/128 (78.12%), Query Frame = 0 

Query: 1   MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTT 60
           MEYDYGEAQDPVPLSLP                         LRS LGHRYPPLPPVNTT
Sbjct: 1   MEYDYGEAQDPVPLSLPVGLVLLFTFLLCMCCFYYCCLHWEKLRSLLGHRYPPLPPVNTT 60

Query: 61  FSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIP 104
           FSPPDKISPLHT TWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIP
Sbjct: 61  FSPPDKISPLHT-TWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIP 120

[Close]
BLAST of Carg00410 vs. ExPASy TrEMBL
Match: A0A6J1J0Z8 (uncharacterized protein At5g65660-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480331 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.6e-41
Identity = 92/128 (71.88%), Postives = 94/128 (73.44%), Query Frame = 0 

Query: 1   MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTT 60
           MEYDYGEAQDPVPLSLP                         LRS +GHRYPPL PVNT 
Sbjct: 1   MEYDYGEAQDPVPLSLPVGLVLLFTFLLCMCCFFSCCLHWEKLRSLIGHRYPPLLPVNTA 60

Query: 61  FSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIP 104
           FSPPDKISP+HTK WKE PAQSLSVLMPGDEVPRFIAMACPPCAAALV VEEQKP R IP
Sbjct: 61  FSPPDKISPVHTKIWKETPAQSLSVLMPGDEVPRFIAMACPPCAAALVVVEEQKPSRSIP 120

[Close]
BLAST of Carg00410 vs. ExPASy TrEMBL
Match: A0A6J1IVG7 (uncharacterized protein At5g65660-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480331 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.5e-39
Identity = 91/128 (71.09%), Postives = 93/128 (72.66%), Query Frame = 0 

Query: 1   MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTT 60
           MEYDYGEAQDPVPLSLP                         LRS +GHRYPPL PVNT 
Sbjct: 1   MEYDYGEAQDPVPLSLPVGLVLLFTFLLCMCCFFSCCLHWEKLRSLIGHRYPPLLPVNTA 60

Query: 61  FSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIP 104
           FSPPDKISP+HT  WKE PAQSLSVLMPGDEVPRFIAMACPPCAAALV VEEQKP R IP
Sbjct: 61  FSPPDKISPVHT-IWKETPAQSLSVLMPGDEVPRFIAMACPPCAAALVVVEEQKPSRSIP 120

[Close]
BLAST of Carg00410 vs. ExPASy TrEMBL
Match: A0A6J1FJP8 (uncharacterized protein At5g65660-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111446057 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.3e-34
Identity = 84/128 (65.62%), Postives = 84/128 (65.62%), Query Frame = 0 

Query: 1   MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTT 60
           MEYDYGEAQDPVPLSLP                         LRS LGHRYPPLPP    
Sbjct: 1   MEYDYGEAQDPVPLSLPVGLVLLFTFLLCMCCFYYCCLHWEKLRSLLGHRYPPLPP---- 60

Query: 61  FSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIP 104
                        TWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIP
Sbjct: 61  -------------TWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIP 111

The following BLAST results are available for this feature:
BLAST of Carg00410 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031753.12.2e-53100.00hypothetical protein SDJN02_05794, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022940470.11.4e-4778.91uncharacterized protein At5g65660-like isoform X1 [Cucurbita moschata][more]
XP_022940471.11.3e-4578.13uncharacterized protein At5g65660-like isoform X2 [Cucurbita moschata][more]
XP_022981074.13.3e-4171.88uncharacterized protein At5g65660-like isoform X1 [Cucurbita maxima][more]
XP_023525689.14.8e-4076.52uncharacterized protein At5g65660-like isoform X1 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg00410 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FQN26.8e-4878.91uncharacterized protein At5g65660-like isoform X1 OS=Cucurbita moschata OX=3662 ... [more]
A0A6J1FIK16.4e-4678.13uncharacterized protein At5g65660-like isoform X2 OS=Cucurbita moschata OX=3662 ... [more]
A0A6J1J0Z81.6e-4171.88uncharacterized protein At5g65660-like isoform X1 OS=Cucurbita maxima OX=3661 GN... [more]
A0A6J1IVG71.5e-3971.09uncharacterized protein At5g65660-like isoform X2 OS=Cucurbita maxima OX=3661 GN... [more]
A0A6J1FJP84.3e-3465.63uncharacterized protein At5g65660-like isoform X3 OS=Cucurbita moschata OX=3662 ... [more]
BLAST of Carg00410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00410-RACarg00410-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane