Carg00401 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00401
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 7033216 .. 7033840 (+)
RNA-Seq ExpressionCarg00401
SyntenyCarg00401
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCATCTGGCCAAGTCGGGACCGTATAGTAAACCCGACCCGACTCAGATTTCCAGAAACCGGAGAATTATGCAAAACGCCAAAGACCCCTCGCTTTCTCTTCTGGAATTTCAAGTGCCAAGGGATTTCCGTCATTTCTCCAACTTCTTTTGCACTGCTCGGAGCTCAATAACTGGACGGCATTTCCCACCGGAATTTCCATTGAAGGCCGTTTTCTTCGACCTGGAATCAGTGAATACCCCCTGATACTGTAAGTTTTTTTAGTAGTGGATATTATACTCTTCTTCAAGCTTTTCATTATCTTGCCTAAGCCGGGTTGGTCTCCACAGTTTAAGCTTTAATGGTCTCCATACTTGCTTCATTTAGCCATTCAAAATTTAATACTCGATCATTTGCCAAACTCTTGCGTTTGTAATTTCTTATGATGCAAGGAAATGGATATTGTCAGTATGTGTGGGATTGCATTCCCCTAGCTTCATGGCGCTGGGTTATTTTTTGTTTCTTTTGTGTTTTTCATTTAGACGAATTTGTTTTGTAGATGCAATTTGGGTCAGTGTACTTGCTGGTTTTCTAGTACAGGATGCTTCTGAGGTTCAGTTATCTTTGTTGTTGGCTTATTAA

mRNA sequence

ATGGCATCATCTGGCCAAGTCGGGACCAAACCGGAGAATTATGCAAAACGCCAAAGACCCCTCGCTTTCTCTTCTGGAATTTCAAGTGCCAAGGGATTTCCGTCATTTCTCCAACTTCTTTTGCACTGCTCGGAGCTCAATAACTGGACGGCATTTCCCACCGGAATTTCCATTGAAGGCCGTTTTCTTCGACCTGGAATCAGTGAATACCCCCTGATACTACGAATTTGTTTTGTAGATGCAATTTGGGTCAGTGTACTTGCTGGTTTTCTAGTACAGGATGCTTCTGAGGTTCAGTTATCTTTGTTGTTGGCTTATTAA

Coding sequence (CDS)

ATGGCATCATCTGGCCAAGTCGGGACCAAACCGGAGAATTATGCAAAACGCCAAAGACCCCTCGCTTTCTCTTCTGGAATTTCAAGTGCCAAGGGATTTCCGTCATTTCTCCAACTTCTTTTGCACTGCTCGGAGCTCAATAACTGGACGGCATTTCCCACCGGAATTTCCATTGAAGGCCGTTTTCTTCGACCTGGAATCAGTGAATACCCCCTGATACTACGAATTTGTTTTGTAGATGCAATTTGGGTCAGTGTACTTGCTGGTTTTCTAGTACAGGATGCTTCTGAGGTTCAGTTATCTTTGTTGTTGGCTTATTAA

Protein sequence

MASSGQVGTKPENYAKRQRPLAFSSGISSAKGFPSFLQLLLHCSELNNWTAFPTGISIEGRFLRPGISEYPLILRICFVDAIWVSVLAGFLVQDASEVQLSLLLAY
Homology
[Close]
BLAST of Carg00401 vs. NCBI nr
Match: KAG7031744.1 (hypothetical protein SDJN02_05785, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 212.6 bits (540), Expect = 1.6e-51
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MASSGQVGTKPENYAKRQRPLAFSSGISSAKGFPSFLQLLLHCSELNNWTAFPTGISIEG 60
           MASSGQVGTKPENYAKRQRPLAFSSGISSAKGFPSFLQLLLHCSELNNWTAFPTGISIEG
Sbjct: 1   MASSGQVGTKPENYAKRQRPLAFSSGISSAKGFPSFLQLLLHCSELNNWTAFPTGISIEG 60

Query: 61  RFLRPGISEYPLILRICFVDAIWVSVLAGFLVQDASEVQLSLLLAY 107
           RFLRPGISEYPLILRICFVDAIWVSVLAGFLVQDASEVQLSLLLAY
Sbjct: 61  RFLRPGISEYPLILRICFVDAIWVSVLAGFLVQDASEVQLSLLLAY 106

The following BLAST results are available for this feature:
BLAST of Carg00401 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031744.11.6e-51100.00hypothetical protein SDJN02_05785, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg00401 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00401 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00401 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00401-RACarg00401-RAmRNA