Carg00372 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGGAGTCGAGGCGGAATCCAGAGATGAAGCAATGAGATCCAAAACTGCATTTCGATGTGCGAAAGCAGCGTTTCTGATTTCTTCGTTCAAATCCTTACAGAATCGCAACCTCAGAGCATCTGTCGACGAAGAAGCGAAGGTTCTCGATGAAAATTTATGAACAGTAACTGTGCTTGTGATCGCGCACTGGTTTATTTGATTTGGATTAGTAATCAACATAAGCGATTTTGAGAAATTAAAATGTCTATTACCTTTCAGGAGAAAGAGAGACTGAGGAAAGTTGTTGGAGATTTGAAGATCGAGTTGGCTATGGAGCGTCGGAGGAATAGGAGGATCAAGCTCTGCGGTTTGATGGAATTCGTTCTTCAGCTCTTGCTGGTTATTTCTCTTTCGAGCTTCTTCCTTTTTATCGCCTTCAAATCTATCTGA ATGGAGGGAGTCGAGGCGGAATCCAGAGATGAAGCAATGAGATCCAAAACTGCATTTCGATGTGCGAAAGCAGCGTTTCTGATTTCTTCGTTCAAATCCTTACAGAATCGCAACCTCAGAGCATCTGTCGACGAAGAAGCGAAGGAGAAAGAGAGACTGAGGAAAGTTGTTGGAGATTTGAAGATCGAGTTGGCTATGGAGCGTCGGAGGAATAGGAGGATCAAGCTCTGCGGTTTGATGGAATTCGTTCTTCAGCTCTTGCTGGTTATTTCTCTTTCGAGCTTCTTCCTTTTTATCGCCTTCAAATCTATCTGA ATGGAGGGAGTCGAGGCGGAATCCAGAGATGAAGCAATGAGATCCAAAACTGCATTTCGATGTGCGAAAGCAGCGTTTCTGATTTCTTCGTTCAAATCCTTACAGAATCGCAACCTCAGAGCATCTGTCGACGAAGAAGCGAAGGAGAAAGAGAGACTGAGGAAAGTTGTTGGAGATTTGAAGATCGAGTTGGCTATGGAGCGTCGGAGGAATAGGAGGATCAAGCTCTGCGGTTTGATGGAATTCGTTCTTCAGCTCTTGCTGGTTATTTCTCTTTCGAGCTTCTTCCTTTTTATCGCCTTCAAATCTATCTGA MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGDLKIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI Homology
BLAST of Carg00372 vs. NCBI nr
Match: KAG7031715.1 (hypothetical protein SDJN02_05756, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 184.1 bits (466), Expect = 6.1e-43 Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0
BLAST of Carg00372 vs. NCBI nr
Match: XP_022940284.1 (uncharacterized protein LOC111445952 [Cucurbita moschata] >XP_023524781.1 uncharacterized protein LOC111788615 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 180.3 bits (456), Expect = 8.8e-42 Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 0
BLAST of Carg00372 vs. NCBI nr
Match: KAG6608080.1 (hypothetical protein SDJN03_01422, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 159.8 bits (403), Expect = 1.2e-35 Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0
BLAST of Carg00372 vs. NCBI nr
Match: XP_022138206.1 (uncharacterized protein LOC111009432 [Momordica charantia]) HSP 1 Score: 144.1 bits (362), Expect = 7.0e-31 Identity = 81/103 (78.64%), Postives = 91/103 (88.35%), Query Frame = 0
BLAST of Carg00372 vs. NCBI nr
Match: KAA0038606.1 (putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa] >TYK31205.1 putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa]) HSP 1 Score: 137.1 bits (344), Expect = 8.6e-29 Identity = 80/105 (76.19%), Postives = 90/105 (85.71%), Query Frame = 0
BLAST of Carg00372 vs. ExPASy TrEMBL
Match: A0A6J1FJM5 (uncharacterized protein LOC111445952 OS=Cucurbita moschata OX=3662 GN=LOC111445952 PE=4 SV=1) HSP 1 Score: 180.3 bits (456), Expect = 4.3e-42 Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 0
BLAST of Carg00372 vs. ExPASy TrEMBL
Match: A0A6J1C920 (uncharacterized protein LOC111009432 OS=Momordica charantia OX=3673 GN=LOC111009432 PE=4 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 3.4e-31 Identity = 81/103 (78.64%), Postives = 91/103 (88.35%), Query Frame = 0
BLAST of Carg00372 vs. ExPASy TrEMBL
Match: A0A5D3E7E0 (Putative Retrotransposon-derived protein PEG10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004900 PE=4 SV=1) HSP 1 Score: 137.1 bits (344), Expect = 4.1e-29 Identity = 80/105 (76.19%), Postives = 90/105 (85.71%), Query Frame = 0
BLAST of Carg00372 vs. ExPASy TrEMBL
Match: A0A0A0LJY1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895820 PE=4 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 1.7e-27 Identity = 78/102 (76.47%), Postives = 88/102 (86.27%), Query Frame = 0
BLAST of Carg00372 vs. ExPASy TrEMBL
Match: A0A6J5WH66 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS9727 PE=4 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 1.8e-16 Identity = 55/107 (51.40%), Postives = 81/107 (75.70%), Query Frame = 0
BLAST of Carg00372 vs. TAIR 10
Match: AT1G78172.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 55.1 bits (131), Expect = 4.0e-08 Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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