Carg00372 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00372
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRetrotransposon-derived protein PEG10, putative
LocationCarg_Chr04: 6872529 .. 6872962 (+)
RNA-Seq ExpressionCarg00372
SyntenyCarg00372
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGAGTCGAGGCGGAATCCAGAGATGAAGCAATGAGATCCAAAACTGCATTTCGATGTGCGAAAGCAGCGTTTCTGATTTCTTCGTTCAAATCCTTACAGAATCGCAACCTCAGAGCATCTGTCGACGAAGAAGCGAAGGTTCTCGATGAAAATTTATGAACAGTAACTGTGCTTGTGATCGCGCACTGGTTTATTTGATTTGGATTAGTAATCAACATAAGCGATTTTGAGAAATTAAAATGTCTATTACCTTTCAGGAGAAAGAGAGACTGAGGAAAGTTGTTGGAGATTTGAAGATCGAGTTGGCTATGGAGCGTCGGAGGAATAGGAGGATCAAGCTCTGCGGTTTGATGGAATTCGTTCTTCAGCTCTTGCTGGTTATTTCTCTTTCGAGCTTCTTCCTTTTTATCGCCTTCAAATCTATCTGA

mRNA sequence

ATGGAGGGAGTCGAGGCGGAATCCAGAGATGAAGCAATGAGATCCAAAACTGCATTTCGATGTGCGAAAGCAGCGTTTCTGATTTCTTCGTTCAAATCCTTACAGAATCGCAACCTCAGAGCATCTGTCGACGAAGAAGCGAAGGAGAAAGAGAGACTGAGGAAAGTTGTTGGAGATTTGAAGATCGAGTTGGCTATGGAGCGTCGGAGGAATAGGAGGATCAAGCTCTGCGGTTTGATGGAATTCGTTCTTCAGCTCTTGCTGGTTATTTCTCTTTCGAGCTTCTTCCTTTTTATCGCCTTCAAATCTATCTGA

Coding sequence (CDS)

ATGGAGGGAGTCGAGGCGGAATCCAGAGATGAAGCAATGAGATCCAAAACTGCATTTCGATGTGCGAAAGCAGCGTTTCTGATTTCTTCGTTCAAATCCTTACAGAATCGCAACCTCAGAGCATCTGTCGACGAAGAAGCGAAGGAGAAAGAGAGACTGAGGAAAGTTGTTGGAGATTTGAAGATCGAGTTGGCTATGGAGCGTCGGAGGAATAGGAGGATCAAGCTCTGCGGTTTGATGGAATTCGTTCTTCAGCTCTTGCTGGTTATTTCTCTTTCGAGCTTCTTCCTTTTTATCGCCTTCAAATCTATCTGA

Protein sequence

MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGDLKIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI
Homology
BLAST of Carg00372 vs. NCBI nr
Match: KAG7031715.1 (hypothetical protein SDJN02_05756, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.1 bits (466), Expect = 6.1e-43
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0

Query: 1   MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGDL 60
           MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGDL
Sbjct: 1   MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGDL 60

Query: 61  KIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI 105
           KIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI
Sbjct: 61  KIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI 104

BLAST of Carg00372 vs. NCBI nr
Match: XP_022940284.1 (uncharacterized protein LOC111445952 [Cucurbita moschata] >XP_023524781.1 uncharacterized protein LOC111788615 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 180.3 bits (456), Expect = 8.8e-42
Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 0

Query: 1   MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGDL 60
           MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKS QNRNLRASVDE+AKEKERLRKVVGDL
Sbjct: 1   MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSFQNRNLRASVDEQAKEKERLRKVVGDL 60

Query: 61  KIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI 105
           KIELAMERRRN+RIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI
Sbjct: 61  KIELAMERRRNKRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI 104

BLAST of Carg00372 vs. NCBI nr
Match: KAG6608080.1 (hypothetical protein SDJN03_01422, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.8 bits (403), Expect = 1.2e-35
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0

Query: 1   MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGDL 60
           MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGDL
Sbjct: 199 MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGDL 258

Query: 61  KIELAMERRRNRRIKLCGLMEFVLQLLLV 90
           KIELAMERRRNRRIKLCGLMEFVLQLLL+
Sbjct: 259 KIELAMERRRNRRIKLCGLMEFVLQLLLL 287

BLAST of Carg00372 vs. NCBI nr
Match: XP_022138206.1 (uncharacterized protein LOC111009432 [Momordica charantia])

HSP 1 Score: 144.1 bits (362), Expect = 7.0e-31
Identity = 81/103 (78.64%), Postives = 91/103 (88.35%), Query Frame = 0

Query: 1   MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGDL 60
           ME VEAESRDEAMRS+TAFRCAKAAF++SS KS QN  LRA+V E  KEKE+LRK +GDL
Sbjct: 1   MEKVEAESRDEAMRSRTAFRCAKAAFVLSSLKSSQNHYLRATVYEIVKEKEKLRKTLGDL 60

Query: 61  KIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAFKS 104
           K+ELA ER RN+RIKLCGLMEFVLQ+LLVI+LSSFF FIAFKS
Sbjct: 61  KVELARERLRNKRIKLCGLMEFVLQILLVITLSSFFFFIAFKS 103

BLAST of Carg00372 vs. NCBI nr
Match: KAA0038606.1 (putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa] >TYK31205.1 putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 8.6e-29
Identity = 80/105 (76.19%), Postives = 90/105 (85.71%), Query Frame = 0

Query: 1   MEGVEAESRDEAMR-SKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGD 60
           ME VEAES+DEAMR SKTA RCAKAAFL+SS KS QNR LRA+  E+AKE++ LRK VGD
Sbjct: 1   MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60

Query: 61  LKIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI 105
           LKI+LA ER RN+RIKLCGLMEFVLQLLLVISLSS  LF+AFK +
Sbjct: 61  LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAFKFV 105

BLAST of Carg00372 vs. ExPASy TrEMBL
Match: A0A6J1FJM5 (uncharacterized protein LOC111445952 OS=Cucurbita moschata OX=3662 GN=LOC111445952 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.3e-42
Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 0

Query: 1   MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGDL 60
           MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKS QNRNLRASVDE+AKEKERLRKVVGDL
Sbjct: 1   MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSFQNRNLRASVDEQAKEKERLRKVVGDL 60

Query: 61  KIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI 105
           KIELAMERRRN+RIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI
Sbjct: 61  KIELAMERRRNKRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI 104

BLAST of Carg00372 vs. ExPASy TrEMBL
Match: A0A6J1C920 (uncharacterized protein LOC111009432 OS=Momordica charantia OX=3673 GN=LOC111009432 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.4e-31
Identity = 81/103 (78.64%), Postives = 91/103 (88.35%), Query Frame = 0

Query: 1   MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGDL 60
           ME VEAESRDEAMRS+TAFRCAKAAF++SS KS QN  LRA+V E  KEKE+LRK +GDL
Sbjct: 1   MEKVEAESRDEAMRSRTAFRCAKAAFVLSSLKSSQNHYLRATVYEIVKEKEKLRKTLGDL 60

Query: 61  KIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAFKS 104
           K+ELA ER RN+RIKLCGLMEFVLQ+LLVI+LSSFF FIAFKS
Sbjct: 61  KVELARERLRNKRIKLCGLMEFVLQILLVITLSSFFFFIAFKS 103

BLAST of Carg00372 vs. ExPASy TrEMBL
Match: A0A5D3E7E0 (Putative Retrotransposon-derived protein PEG10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004900 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.1e-29
Identity = 80/105 (76.19%), Postives = 90/105 (85.71%), Query Frame = 0

Query: 1   MEGVEAESRDEAMR-SKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGD 60
           ME VEAES+DEAMR SKTA RCAKAAFL+SS KS QNR LRA+  E+AKE++ LRK VGD
Sbjct: 1   MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60

Query: 61  LKIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI 105
           LKI+LA ER RN+RIKLCGLMEFVLQLLLVISLSS  LF+AFK +
Sbjct: 61  LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAFKFV 105

BLAST of Carg00372 vs. ExPASy TrEMBL
Match: A0A0A0LJY1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895820 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.7e-27
Identity = 78/102 (76.47%), Postives = 88/102 (86.27%), Query Frame = 0

Query: 1   MEGVEAESRDEAMR-SKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGD 60
           ME VEAE+++EAMR SKTA RCAKAAFL+SS KS QNR LRA+V E+AKEK+ L K VGD
Sbjct: 1   MEDVEAETKNEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKEKKMLGKTVGD 60

Query: 61  LKIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAF 102
           LKI+LA ER RN+RIKLCGLMEFVLQLLLV+SLSS FLF AF
Sbjct: 61  LKIQLARERVRNKRIKLCGLMEFVLQLLLVLSLSSLFLFAAF 102

BLAST of Carg00372 vs. ExPASy TrEMBL
Match: A0A6J5WH66 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS9727 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.8e-16
Identity = 55/107 (51.40%), Postives = 81/107 (75.70%), Query Frame = 0

Query: 1   MEGVEAESRD---EAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVD-EEAKEKERLRKV 60
           MEG E +++    EA+RS  A RCAKAA L+SS KS  NR+L  ++D ++  EKE LR+ 
Sbjct: 1   MEGRETQTKSEGGEALRSHAAIRCAKAALLLSSLKSPPNRSLNTAIDNDDILEKEILRRE 60

Query: 61  VGDLKIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAFKS 104
           +GDLK+E+  ER +N+RIKLCGL+E +LQL+L+++LS+FF  +AF++
Sbjct: 61  IGDLKMEVVRERLQNKRIKLCGLLELLLQLVLLLALSTFFFMLAFEN 107

BLAST of Carg00372 vs. TAIR 10
Match: AT1G78172.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 4.0e-08
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 0

Query: 8  SRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGDLKIELAME 67
          S+DE  R  TA RCA+A  L+ S  S  +R + ++   E +EK   R+ + DL+ +L M 
Sbjct: 3  SKDEFSRDLTAIRCARATMLLYSLAS--SRTIDSA--GEKQEKGETRREIEDLRRKLTMV 62

Query: 68 RRRNRRIKLCGLMEFVLQLLLVISLSSFFL 98
          + +  RIKLCGLME +L + LV+ LS+FFL
Sbjct: 63 KIKMNRIKLCGLMELLLLVFLVLLLSTFFL 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7031715.16.1e-43100.00hypothetical protein SDJN02_05756, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022940284.18.8e-4297.12uncharacterized protein LOC111445952 [Cucurbita moschata] >XP_023524781.1 unchar... [more]
KAG6608080.11.2e-3598.88hypothetical protein SDJN03_01422, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022138206.17.0e-3178.64uncharacterized protein LOC111009432 [Momordica charantia][more]
KAA0038606.18.6e-2976.19putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa] >TYK31... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FJM54.3e-4297.12uncharacterized protein LOC111445952 OS=Cucurbita moschata OX=3662 GN=LOC1114459... [more]
A0A6J1C9203.4e-3178.64uncharacterized protein LOC111009432 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A5D3E7E04.1e-2976.19Putative Retrotransposon-derived protein PEG10 OS=Cucumis melo var. makuwa OX=11... [more]
A0A0A0LJY11.7e-2776.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895820 PE=4 SV=1[more]
A0A6J5WH661.8e-1651.40Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS9727 PE=4 SV... [more]
Match NameE-valueIdentityDescription
AT1G78172.14.0e-0843.33unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 36..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00372-RACarg00372-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane