Carg00371 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00371
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 6870371 .. 6870803 (+)
RNA-Seq ExpressionCarg00371
SyntenyCarg00371
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCAAGGAGCAAATTGGAGCCTAGCCCAGGTGGTGATCCCTTGAGCTTGGACCTTGAGCTGAATCTCAACAGCCAATCTATGAGAAATGGAGGTGAATCAAAGAAGAGGAGCGATGGGGCATGGAAAGAAGGACATGGGTGTCCGCAGCAAGAGATGATAGCGAGGGTTTGCATGCAGTGTCACTTATTGGTAATGGTATTGAAGTCCTCACCGACATGTCCCAACTGCAAATTCATACACCCAATAGACCTGCAAACCCCACCAACTACAACCTTGTTTATAGCCTCTCGCTCTACTAACAATAATCAAACCCAGTCCTTAAAAGGTTTCCCAAACCCTATTCAAAATAAAGTCTAAGTGTGTGGCTATTGATTTAGTGAATTATGAGTAGGACCAGACTTCACTTTATGTTTTGGAATATATGTAA

mRNA sequence

ATGGATCCAAGGAGCAAATTGGAGCCTAGCCCAGGTGGTGATCCCTTGAGCTTGGACCTTGAGCTGAATCTCAACAGCCAATCTATGAGAAATGGAGGTGAATCAAAGAAGAGGAGCGATGGGGCATGGAAAGAAGGACATGGGTGTCCGCAGCAAGAGATGATAGCGAGGGACCAGACTTCACTTTATGTTTTGGAATATATGTAA

Coding sequence (CDS)

ATGGATCCAAGGAGCAAATTGGAGCCTAGCCCAGGTGGTGATCCCTTGAGCTTGGACCTTGAGCTGAATCTCAACAGCCAATCTATGAGAAATGGAGGTGAATCAAAGAAGAGGAGCGATGGGGCATGGAAAGAAGGACATGGGTGTCCGCAGCAAGAGATGATAGCGAGGGACCAGACTTCACTTTATGTTTTGGAATATATGTAA

Protein sequence

MDPRSKLEPSPGGDPLSLDLELNLNSQSMRNGGESKKRSDGAWKEGHGCPQQEMIARDQTSLYVLEYM
Homology
BLAST of Carg00371 vs. NCBI nr
Match: KAG7031714.1 (hypothetical protein SDJN02_05755, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.7 bits (356), Expect = 2.3e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 1  MDPRSKLEPSPGGDPLSLDLELNLNSQSMRNGGESKKRSDGAWKEGHGCPQQEMIARDQT 60
          MDPRSKLEPSPGGDPLSLDLELNLNSQSMRNGGESKKRSDGAWKEGHGCPQQEMIARDQT
Sbjct: 1  MDPRSKLEPSPGGDPLSLDLELNLNSQSMRNGGESKKRSDGAWKEGHGCPQQEMIARDQT 60

Query: 61 SLYVLEYM 69
          SLYVLEYM
Sbjct: 61 SLYVLEYM 68

BLAST of Carg00371 vs. NCBI nr
Match: KAG6608080.1 (hypothetical protein SDJN03_01422, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.8 bits (299), Expect = 9.2e-24
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1   MDPRSKLEPSPGGDPLSLDLELNLNSQSMRNGGESKKRSDGAWKEGHGCPQQEMIAR 58
           MDPRSKLEPSPGGDPLSLDLELNLNSQSMRNGGESKKRSDGAWKEGHGCPQQEMIAR
Sbjct: 59  MDPRSKLEPSPGGDPLSLDLELNLNSQSMRNGGESKKRSDGAWKEGHGCPQQEMIAR 115

BLAST of Carg00371 vs. NCBI nr
Match: XP_022940283.1 (uncharacterized protein LOC111445951 [Cucurbita moschata])

HSP 1 Score: 117.5 bits (293), Expect = 4.6e-23
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1   MDPRSKLEPSPGGDPLSLDLELNLNSQSMRNGGESKKRSDGAWKEGHGCPQQEMIAR 58
           MDPRSKLEPSPGGDPLSLDLELNLNSQSMRNGGESKK+SDGAWK+GHGCPQQEMIAR
Sbjct: 59  MDPRSKLEPSPGGDPLSLDLELNLNSQSMRNGGESKKKSDGAWKQGHGCPQQEMIAR 115

BLAST of Carg00371 vs. NCBI nr
Match: XP_023524779.1 (uncharacterized protein LOC111788613 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.4 bits (285), Expect = 3.9e-22
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0

Query: 1   MDPRSKLEPSPGGDPLSLDLELNLNSQSMRNGGESKKRSDGAWKEGHGCPQQEMIAR 58
           MDPRSKLE SPGGDPLSLDLELNLNSQSMRNGGESKK+SDGAWK+GHGCPQQEMIAR
Sbjct: 59  MDPRSKLETSPGGDPLSLDLELNLNSQSMRNGGESKKKSDGAWKQGHGCPQQEMIAR 115

BLAST of Carg00371 vs. NCBI nr
Match: XP_022981059.1 (uncharacterized protein LOC111480319 [Cucurbita maxima])

HSP 1 Score: 108.6 bits (270), Expect = 2.1e-20
Identity = 54/64 (84.38%), Postives = 56/64 (87.50%), Query Frame = 0

Query: 1   MDPRSKLEPSPGGDPLSLDLELNLNSQSMRNGGESKKRSDG-------AWKEGHGCPQQE 58
           MDPRSKLEP PGGDPLSLDLELNLNSQSMRNGGESKK+SDG       AWK+GHGCPQQE
Sbjct: 55  MDPRSKLEPRPGGDPLSLDLELNLNSQSMRNGGESKKKSDGAMASLGRAWKQGHGCPQQE 114

BLAST of Carg00371 vs. ExPASy TrEMBL
Match: A0A6J1FNU7 (uncharacterized protein LOC111445951 OS=Cucurbita moschata OX=3662 GN=LOC111445951 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.2e-23
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1   MDPRSKLEPSPGGDPLSLDLELNLNSQSMRNGGESKKRSDGAWKEGHGCPQQEMIAR 58
           MDPRSKLEPSPGGDPLSLDLELNLNSQSMRNGGESKK+SDGAWK+GHGCPQQEMIAR
Sbjct: 59  MDPRSKLEPSPGGDPLSLDLELNLNSQSMRNGGESKKKSDGAWKQGHGCPQQEMIAR 115

BLAST of Carg00371 vs. ExPASy TrEMBL
Match: A0A6J1J0Y6 (uncharacterized protein LOC111480319 OS=Cucurbita maxima OX=3661 GN=LOC111480319 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.0e-20
Identity = 54/64 (84.38%), Postives = 56/64 (87.50%), Query Frame = 0

Query: 1   MDPRSKLEPSPGGDPLSLDLELNLNSQSMRNGGESKKRSDG-------AWKEGHGCPQQE 58
           MDPRSKLEP PGGDPLSLDLELNLNSQSMRNGGESKK+SDG       AWK+GHGCPQQE
Sbjct: 55  MDPRSKLEPRPGGDPLSLDLELNLNSQSMRNGGESKKKSDGAMASLGRAWKQGHGCPQQE 114

BLAST of Carg00371 vs. ExPASy TrEMBL
Match: A0A6J1IME5 (uncharacterized protein LOC111476564 OS=Cucurbita maxima OX=3661 GN=LOC111476564 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.4e-08
Identity = 42/76 (55.26%), Postives = 49/76 (64.47%), Query Frame = 0

Query: 1   MDPRSKLEPSP--GGDPLSLDLELNLNSQSMRNGGESKKRSDG--------AWKEGHGCP 58
           MDPR K E S   GG+PLSLDLELNLN QS+RNGG++KK+SDG          K+G+GCP
Sbjct: 55  MDPRRKWEGSNSLGGEPLSLDLELNLNCQSIRNGGQTKKKSDGIMGGGLGKGLKQGNGCP 114

BLAST of Carg00371 vs. ExPASy TrEMBL
Match: A0A6J1F8N8 (uncharacterized protein LOC111443136 OS=Cucurbita moschata OX=3662 GN=LOC111443136 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.7e-07
Identity = 41/76 (53.95%), Postives = 49/76 (64.47%), Query Frame = 0

Query: 1   MDPRSKLE--PSPGGDPLSLDLELNLNSQSMRNGGESKKRSDG--------AWKEGHGCP 58
           MDPR K E   S GG+PLSLDLELNLN QS+R+GG++KK+SDG          K+G+GCP
Sbjct: 55  MDPRRKWEGPNSLGGEPLSLDLELNLNCQSIRHGGQTKKKSDGIMGGGLGKGLKQGNGCP 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7031714.12.3e-30100.00hypothetical protein SDJN02_05755, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6608080.19.2e-24100.00hypothetical protein SDJN03_01422, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022940283.14.6e-2396.49uncharacterized protein LOC111445951 [Cucurbita moschata][more]
XP_023524779.13.9e-2294.74uncharacterized protein LOC111788613 [Cucurbita pepo subsp. pepo][more]
XP_022981059.12.1e-2084.38uncharacterized protein LOC111480319 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FNU72.2e-2396.49uncharacterized protein LOC111445951 OS=Cucurbita moschata OX=3662 GN=LOC1114459... [more]
A0A6J1J0Y61.0e-2084.38uncharacterized protein LOC111480319 OS=Cucurbita maxima OX=3661 GN=LOC111480319... [more]
A0A6J1IME53.4e-0855.26uncharacterized protein LOC111476564 OS=Cucurbita maxima OX=3661 GN=LOC111476564... [more]
A0A6J1F8N81.7e-0753.95uncharacterized protein LOC111443136 OS=Cucurbita moschata OX=3662 GN=LOC1114431... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00371-RACarg00371-RAmRNA