Carg00326 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00326
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein HAPLESS 2 isoform X1
Location	Carg_Chr04: 6604687 .. 6607217 (+)
RNA-Seq Expression	Carg00326
Synteny	Carg00326

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGTGACACACGCCACTCTTCTTCCATATGCGATTCTTCACTTCCCCTTGCTGTTTAAACATTCTAATCGATGTAATACTTTCTGGAGTGTTTGCATTTTAAAATTTTCATGGCGTGTATGATCGATTGATTCTACGAGTTCGATTTACCGAGCAAGCTTCTCTGATTGTTCTGGAGTGCAAATCTTATCTGCGAGTGAAAATACCAATGATCGATGATTGATTGTTCTAGTTATGATGATTATTGTGTTCAATTTTTCCCGTTTAGGTCTTGATTTTTCACGTTTTCATCTTATTTCGCAGGAGTGTTTTGTTTTGTTAGTGAATGCTGAATCTATCCGACGCAATGGGTAATGTAGCCAGTTCATTGGCCTCTGGTTTGTTTTTGGCTCTTAACAAAGTATTTGGATCTCCACTTGATTTTCTCTCTGGAAAATCCTGCAGGTTGGTACCATTTTTCTTTTGCTTTTTCTCATCATGTGGCTTCTGCTCATAAACCTAATAATTTACCTGATTTTGTAATGTTCTATGCGCTATTTGATTGAGTGCTGTTTACCAGATTTTGTCTTATTTTGTGCCTTTTGATTGAGTATTGTTTACCTGATTTTGTCACTGGGCGCACATGTTGGCAGTTCAGTGTGTGGATCAACATGGGATTTCATATGCTACATAGAAAATTTCTGCGTTGCCAATTTGCTAAAGATGGGCATGGTCGTGATCCTTGCATACTTTGGTGAGTGAAACAAGAAACTCCATGTCTTTGAGAATTTTGGTACTTCTAATATGTAGGGATTTCTTTGTTTTCTGTGGTTGGGAGAAGGCAGCCTTATAGTTTAAAACTTGCATATCAATGTCCAAAGTTATCTGATGATATAGACATGTTTTGAAGTGATTTTGGAACGGCCAAAGTAACTCTTGTCGTGTCCAAAATAACTAAAAGTTGCACGATAAAAGTAATTTTGAAACGACCAAAATCACTCGTGAACGTCCTTAGTTTTGTTAGCATTCTAGACCCACCCGCTTCGAGTATTTATAGAACCTTTCTAGTTCAAGAGTAGTAGAACTTACTCGATACGGTAGTATGGAGAAATCTGACTGTTTCTGTAATATTTCGAAATATAATTCGTCTCTTGACTTTGTAGTTTACGAATTAGAGTTGCCTATATCTATGGCTTACTGATGTAATGGGAAAACGCCTACTAAGTCGATATAGTATGGAAAATGTATAATCCATATTTGATAGCTTCTAGTTATGGGAATGAAGTTTTAGTTCATCAGCATATGGCGTACTGATGTAATTGTGTGAGAATTCATATCGGTTGGAGAGGGAAACAAAGCATTTCTTATAACGGTGTGGAAACCTCTCCCTAGTAGACTCGTTTTAAAACCATAAGGCTGACGACGATACCTAATAGGCCAAAACGAGCAATATCTGCTAGTGGTGGGTTTGGGTTGTTACAAATGGTATTAGAGCCAGACACTGAGCGGTGTGCCAGCGATGCCACTGGACCCCCAAGGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGATGGGAATAAACCATTCCTTATAAGGGTGTGGAAACCCCTCCCTAGTAGATGCGTCTTAAAACCGTGAGGCTTATAGCGATACGTAACAGGTCAAAGTGAACAATATCTGCTAGCAGTGGGCTTGGGTTGTTATAAATTGTAAGGCTGCTTATCCCCCAAAAAAAAAAATTTATATGCCTGGTGTGACTCTAAATCATAGGCTCCCAAGATCAAACGAATTCCTTAGGAAAGGGATCTAAACGAGCCCTCTCCCGTTGCTGTTCCCGGATCACCCATTTTAGTTTCAAGTGATTCTAAGAATCCTTAGACGCTTTAGAACTCGAGTACCAAATAATATATGTGCATTATTACTTGTTGTTTATTACATGGAACATTAGTTTCAGTATATATGTGAATAATCTTTTTTGGGAATTGAATGCAGTTCTTTTACTCCTCTATTTATTCCATAAAATTGGCATATTTGGATGCATCGGTCGGGGTCTCTGCAGAATGATATGGACATGTTTAGCTTCCTATTGCCATGCATGGGAGTACTGCTGCACTTTCATGTGTATCAAGCTTGCCAGTGTCAAAAGAACAAGACGACGACGCCATAGAAGAAGAGACCTAGAAGAAGAACTCGAAAGTGAAGAAGAAGCAAAACATCGATATGGGTCATCAAGTGATTCAAGCAACGACTCCGAAAAGATTGAGTCGAGAAGGAGCAAACGGGTGTCTCGCAAACGGAGGAGGAGCCACAGAGGTTCTCAAACAAGTAAGACATTGAGGCCAACGAGCCATGGAATTCGAGTGAGGAGTGGTAGAGTGTTGGTCTATAGTAAGCATGGATCATCCAAGATCGTGCAGAAAGAAAGAAAGTATAGAAGAGGAAGACAAATACGAAGGTAAGAGATTTGAACTTCTAACTTTTTACGATACATAAAAATTTAAATTAGTCATATTAATTTTTGTAGCTATATTAAATAATAATGTTATTTCC

mRNA sequence

AATGTGACACACGCCACTCTTCTTCCATATGCGATTCTTCACTTCCCCTTGCTGTTTAAACATTCTAATCGATGTAATACTTTCTGGAGTGTTTGCATTTTAAAATTTTCATGGCGTGTATGATCGATTGATTCTACGAGTTCGATTTACCGAGCAAGCTTCTCTGATTGTTCTGGAGTGCAAATCTTATCTGCGAGTGAAAATACCAATGATCGATGATTGATTGTTCTAGTTATGATGATTATTGTGTTCAATTTTTCCCGTTTAGGTCTTGATTTTTCACGTTTTCATCTTATTTCGCAGGAGTGTTTTGTTTTGTTAGTGAATGCTGAATCTATCCGACGCAATGGGTAATGTAGCCAGTTCATTGGCCTCTGGTTTGTTTTTGGCTCTTAACAAAGTATTTGGATCTCCACTTGATTTTCTCTCTGGAAAATCCTGCAGTTCAGTGTGTGGATCAACATGGGATTTCATATGCTACATAGAAAATTTCTGCGTTGCCAATTTGCTAAAGATGGGCATGGTCGTGATCCTTGCATACTTTGTTCTTTTACTCCTCTATTTATTCCATAAAATTGGCATATTTGGATGCATCGGTCGGGGTCTCTGCAGAATGATATGGACATGTTTAGCTTCCTATTGCCATGCATGGGAGTACTGCTGCACTTTCATGTGTATCAAGCTTGCCAGTGTCAAAAGAACAAGACGACGACGCCATAGAAGAAGAGACCTAGAAGAAGAACTCGAAAGTGAAGAAGAAGCAAAACATCGATATGGGTCATCAAGTGATTCAAGCAACGACTCCGAAAAGATTGAGTCGAGAAGGAGCAAACGGGTGTCTCGCAAACGGAGGAGGAGCCACAGAGGTTCTCAAACAAGTAAGACATTGAGGCCAACGAGCCATGGAATTCGAGTGAGGAGTGGTAGAGTGTTGGTCTATAGTAAGCATGGATCATCCAAGATCGTGCAGAAAGAAAGAAAGTATAGAAGAGGAAGACAAATACGAAGGTAAGAGATTTGAACTTCTAACTTTTTACGATACATAAAAATTTAAATTAGTCATATTAATTTTTGTAGCTATATTAAATAATAATGTTATTTCC

Coding sequence (CDS)

ATGCTGAATCTATCCGACGCAATGGGTAATGTAGCCAGTTCATTGGCCTCTGGTTTGTTTTTGGCTCTTAACAAAGTATTTGGATCTCCACTTGATTTTCTCTCTGGAAAATCCTGCAGTTCAGTGTGTGGATCAACATGGGATTTCATATGCTACATAGAAAATTTCTGCGTTGCCAATTTGCTAAAGATGGGCATGGTCGTGATCCTTGCATACTTTGTTCTTTTACTCCTCTATTTATTCCATAAAATTGGCATATTTGGATGCATCGGTCGGGGTCTCTGCAGAATGATATGGACATGTTTAGCTTCCTATTGCCATGCATGGGAGTACTGCTGCACTTTCATGTGTATCAAGCTTGCCAGTGTCAAAAGAACAAGACGACGACGCCATAGAAGAAGAGACCTAGAAGAAGAACTCGAAAGTGAAGAAGAAGCAAAACATCGATATGGGTCATCAAGTGATTCAAGCAACGACTCCGAAAAGATTGAGTCGAGAAGGAGCAAACGGGTGTCTCGCAAACGGAGGAGGAGCCACAGAGGTTCTCAAACAAGTAAGACATTGAGGCCAACGAGCCATGGAATTCGAGTGAGGAGTGGTAGAGTGTTGGTCTATAGTAAGCATGGATCATCCAAGATCGTGCAGAAAGAAAGAAAGTATAGAAGAGGAAGACAAATACGAAGGTAA

Protein sequence

MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVANLLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKLASVKRTRRRRHRRRDLEEELESEEEAKHRYGSSSDSSNDSEKIESRRSKRVSRKRRRSHRGSQTSKTLRPTSHGIRVRSGRVLVYSKHGSSKIVQKERKYRRGRQIRR

Homology

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BLAST of Carg00326 vs. NCBI nr
Match: KAG7031669.1 (Protein HAPLESS 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 428.7 bits (1101), Expect = 3.1e-116
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN 60
           MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN
Sbjct: 1   MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN 60

Query: 61  LLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKL 120
           LLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKL
Sbjct: 61  LLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKL 120

Query: 121 ASVKRTRRRRHRRRDLEEELESEEEAKHRYGSSSDSSNDSEKIESRRSKRVSRKRRRSHR 180
           ASVKRTRRRRHRRRDLEEELESEEEAKHRYGSSSDSSNDSEKIESRRSKRVSRKRRRSHR
Sbjct: 121 ASVKRTRRRRHRRRDLEEELESEEEAKHRYGSSSDSSNDSEKIESRRSKRVSRKRRRSHR 180

Query: 181 GSQTSKTLRPTSHGIRVRSGRVLVYSKHGSSKIVQKERKYRRGRQIRR 229
           GSQTSKTLRPTSHGIRVRSGRVLVYSKHGSSKIVQKERKYRRGRQIRR
Sbjct: 181 GSQTSKTLRPTSHGIRVRSGRVLVYSKHGSSKIVQKERKYRRGRQIRR 228

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BLAST of Carg00326 vs. NCBI nr
Match: KAG6608041.1 (Protein HAPLESS 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 426.4 bits (1095), Expect = 1.5e-115
Identity = 227/228 (99.56%), Postives = 227/228 (99.56%), Query Frame = 0


Query: 1   MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN 60
           MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN
Sbjct: 1   MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN 60

Query: 61  LLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKL 120
           LLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKL
Sbjct: 61  LLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKL 120

Query: 121 ASVKRTRRRRHRRRDLEEELESEEEAKHRYGSSSDSSNDSEKIESRRSKRVSRKRRRSHR 180
           ASVKRTRRRRHRRRDLEEELESEEEAKHRYGSSSDSSNDSEKIESRRSKRVSRKRRRSHR
Sbjct: 121 ASVKRTRRRRHRRRDLEEELESEEEAKHRYGSSSDSSNDSEKIESRRSKRVSRKRRRSHR 180

Query: 181 GSQTSKTLRPTSHGIRVRSGRVLVYSKHGSSKIVQKERKYRRGRQIRR 229
           GSQTSKTLRP SHGIRVRSGRVLVYSKHGSSKIVQKERKYRRGRQIRR
Sbjct: 181 GSQTSKTLRPRSHGIRVRSGRVLVYSKHGSSKIVQKERKYRRGRQIRR 228

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BLAST of Carg00326 vs. NCBI nr
Match: XP_022940192.1 (uncharacterized protein LOC111445893 [Cucurbita moschata] >XP_022940193.1 uncharacterized protein LOC111445893 [Cucurbita moschata])

HSP 1 Score: 413.3 bits (1061), Expect = 1.4e-111
Identity = 222/228 (97.37%), Postives = 225/228 (98.68%), Query Frame = 0


Query: 1   MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN 60
           MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN
Sbjct: 1   MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN 60

Query: 61  LLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKL 120
           LLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKL
Sbjct: 61  LLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKL 120

Query: 121 ASVKRTRRRRHRRRDLEEELESEEEAKHRYGSSSDSSNDSEKIESRRSKRVSRKRRRSHR 180
           ASVKRT RRRHRRRDLEEELESEE+AK+RYGSSSDSSNDS+KIESRRSKRVSRKRRRSHR
Sbjct: 121 ASVKRT-RRRHRRRDLEEELESEEDAKYRYGSSSDSSNDSKKIESRRSKRVSRKRRRSHR 180

Query: 181 GSQTSKTLRPTSHGIRVRSGRVLVYSKHGSSKIVQKERKYRRGRQIRR 229
           GSQTSKTLRP SHGIRVRSGRVLVYSKHGSSKIVQKER YRRGRQIRR
Sbjct: 181 GSQTSKTLRPPSHGIRVRSGRVLVYSKHGSSKIVQKERNYRRGRQIRR 227

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BLAST of Carg00326 vs. NCBI nr
Match: XP_023523489.1 (protein HAPLESS 2 [Cucurbita pepo subsp. pepo] >XP_023523490.1 protein HAPLESS 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 412.1 bits (1058), Expect = 3.0e-111
Identity = 221/227 (97.36%), Postives = 223/227 (98.24%), Query Frame = 0


Query: 1   MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN 60
           MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN
Sbjct: 1   MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN 60

Query: 61  LLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKL 120
           LLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKL
Sbjct: 61  LLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKL 120

Query: 121 ASVKRTRRRRHRRRDLEEELESEEEAKHRYGSSSDSSNDSEKIESRRSKRVSRKRRRSHR 180
           ASVKRT RRRHRRRDLEEELESEEEAKHRYGSSSDSSN+SEKIESRR KRVSRK+RRSHR
Sbjct: 121 ASVKRT-RRRHRRRDLEEELESEEEAKHRYGSSSDSSNNSEKIESRRRKRVSRKQRRSHR 180

Query: 181 GSQTSKTLRPTSHGIRVRSGRVLVYSKHGSSKIVQKERKYRRGRQIR 228
           GSQTSKTLRPT HGIRVRSGRVLVYSKHGSSK VQKERKYRRGRQIR
Sbjct: 181 GSQTSKTLRPTFHGIRVRSGRVLVYSKHGSSKFVQKERKYRRGRQIR 226

[Close]

BLAST of Carg00326 vs. NCBI nr
Match: XP_022981050.1 (uncharacterized protein LOC111480312 [Cucurbita maxima] >XP_022981051.1 uncharacterized protein LOC111480312 [Cucurbita maxima])

HSP 1 Score: 406.8 bits (1044), Expect = 1.3e-109
Identity = 218/228 (95.61%), Postives = 222/228 (97.37%), Query Frame = 0


Query: 1   MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN 60
           MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN
Sbjct: 1   MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN 60

Query: 61  LLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKL 120
           LLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRG CRMIWTCLASYCHAWEYCCTFMC+KL
Sbjct: 61  LLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRGFCRMIWTCLASYCHAWEYCCTFMCVKL 120

Query: 121 ASVKRTRRRRHRRRDLEEELESEEEAKHRYGSSSDSSNDSEKIESRRSKRVSRKRRRSHR 180
           ASVKRT RR HRRRDLEEELESEEEAKHRYGSS DSSNDSEKIESRRS+RVSRKRRRSHR
Sbjct: 121 ASVKRT-RRCHRRRDLEEELESEEEAKHRYGSSCDSSNDSEKIESRRSERVSRKRRRSHR 180

Query: 181 GSQTSKTLRPTSHGIRVRSGRVLVYSKHGSSKIVQKERKYRRGRQIRR 229
           GSQTSKTLRPTSHGIRVRSGRVLVYSKHGSSK VQK+RKYRRGRQ +R
Sbjct: 181 GSQTSKTLRPTSHGIRVRSGRVLVYSKHGSSKFVQKKRKYRRGRQRQR 227

[Close]

BLAST of Carg00326 vs. ExPASy TrEMBL
Match: A0A6J1FIX0 (uncharacterized protein LOC111445893 OS=Cucurbita moschata OX=3662 GN=LOC111445893 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.6e-112
Identity = 222/228 (97.37%), Postives = 225/228 (98.68%), Query Frame = 0


Query: 1   MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN 60
           MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN
Sbjct: 1   MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN 60

Query: 61  LLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKL 120
           LLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKL
Sbjct: 61  LLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKL 120

Query: 121 ASVKRTRRRRHRRRDLEEELESEEEAKHRYGSSSDSSNDSEKIESRRSKRVSRKRRRSHR 180
           ASVKRT RRRHRRRDLEEELESEE+AK+RYGSSSDSSNDS+KIESRRSKRVSRKRRRSHR
Sbjct: 121 ASVKRT-RRRHRRRDLEEELESEEDAKYRYGSSSDSSNDSKKIESRRSKRVSRKRRRSHR 180

Query: 181 GSQTSKTLRPTSHGIRVRSGRVLVYSKHGSSKIVQKERKYRRGRQIRR 229
           GSQTSKTLRP SHGIRVRSGRVLVYSKHGSSKIVQKER YRRGRQIRR
Sbjct: 181 GSQTSKTLRPPSHGIRVRSGRVLVYSKHGSSKIVQKERNYRRGRQIRR 227

[Close]

BLAST of Carg00326 vs. ExPASy TrEMBL
Match: A0A6J1IVE5 (uncharacterized protein LOC111480312 OS=Cucurbita maxima OX=3661 GN=LOC111480312 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 6.1e-110
Identity = 218/228 (95.61%), Postives = 222/228 (97.37%), Query Frame = 0


Query: 1   MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN 60
           MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN
Sbjct: 1   MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN 60

Query: 61  LLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKL 120
           LLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRG CRMIWTCLASYCHAWEYCCTFMC+KL
Sbjct: 61  LLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRGFCRMIWTCLASYCHAWEYCCTFMCVKL 120

Query: 121 ASVKRTRRRRHRRRDLEEELESEEEAKHRYGSSSDSSNDSEKIESRRSKRVSRKRRRSHR 180
           ASVKRT RR HRRRDLEEELESEEEAKHRYGSS DSSNDSEKIESRRS+RVSRKRRRSHR
Sbjct: 121 ASVKRT-RRCHRRRDLEEELESEEEAKHRYGSSCDSSNDSEKIESRRSERVSRKRRRSHR 180

Query: 181 GSQTSKTLRPTSHGIRVRSGRVLVYSKHGSSKIVQKERKYRRGRQIRR 229
           GSQTSKTLRPTSHGIRVRSGRVLVYSKHGSSK VQK+RKYRRGRQ +R
Sbjct: 181 GSQTSKTLRPTSHGIRVRSGRVLVYSKHGSSKFVQKKRKYRRGRQRQR 227

[Close]

BLAST of Carg00326 vs. ExPASy TrEMBL
Match: A0A6J1DMF3 (uncharacterized protein LOC111021352 OS=Momordica charantia OX=3673 GN=LOC111021352 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 5.1e-80
Identity = 173/245 (70.61%), Postives = 191/245 (77.96%), Query Frame = 0


Query: 1   MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN 60
           M NL D MGNVASS+ASG F A+ K+F SPLDFLSGKSCSSVCGSTWDFICYIENFCVAN
Sbjct: 1   MPNLPDIMGNVASSVASGFFSAVGKLFRSPLDFLSGKSCSSVCGSTWDFICYIENFCVAN 60

Query: 61  LLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKL 120
           LLK+GMV+IL+ FV+LLLYL HKIGIFGCI RGLCRM WTC+ASY +AW+YCCTFMCIKL
Sbjct: 61  LLKLGMVLILSLFVILLLYLLHKIGIFGCICRGLCRMTWTCIASYFYAWDYCCTFMCIKL 120

Query: 121 ASVKRTRRRRHRRRDLEEELESEEEAKHRYGSSSDSSNDSEKIESRRSKRVSRKRRRSHR 180
            SVKRTRRRRHRRRDLEEE ES E  KHRYGSSSDSS+  E+IE R S+R SR+ R +HR
Sbjct: 121 GSVKRTRRRRHRRRDLEEEFES-EGGKHRYGSSSDSSSVPERIELRSSQRASRRWRMNHR 180

Query: 181 GSQTSKTLRPTSHGIRVRSGRVLVYSK--------------------HGSSKIVQKERKY 226
           GSQ  K LRP S GIRVRSGR LVY K                    HGSSK V +E +Y
Sbjct: 181 GSQMRKALRPKSRGIRVRSGRTLVYGKHRRKSSEVVNRLGEIHSLGRHGSSKFVHEEIRY 240

[Close]

BLAST of Carg00326 vs. ExPASy TrEMBL
Match: A0A1S4DVV8 (protein HAPLESS 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487604 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 1.1e-79
Identity = 172/238 (72.27%), Postives = 190/238 (79.83%), Query Frame = 0


Query: 8   MGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVANLLKMGMV 67
           MGNVASSLAS +F A+ K+FGSPLDFLSG+SCSSVCGSTWDFICYIENFCVANL+KMGMV
Sbjct: 1   MGNVASSLASDVFSAIGKIFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVANLVKMGMV 60

Query: 68  VILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKLASVKRTR 127
            IL+YFVLLLLYL HKIGIFGCIGRGLCRMIWTCLASY +AWEYCC+FMCIKLASVKRTR
Sbjct: 61  FILSYFVLLLLYLLHKIGIFGCIGRGLCRMIWTCLASYFYAWEYCCSFMCIKLASVKRTR 120

Query: 128 RRRHRRRDLEEELESEEEAKHRYGSSSDSSNDSEKIESRRSKRVSRKRRRSHRGSQTSKT 187
           RR  RRRDLEEE ES EE K ++ S+SDSSN  E +ESR S+  SR+ RR+H+ SQ  K+
Sbjct: 121 RRHVRRRDLEEEFES-EEGKCQHESTSDSSNVLEHVESRSSRWSSRRWRRNHKDSQKRKS 180

Query: 188 LRPTSHGIRVRSGRVLVYSKH--------------------GSSKIVQKERKYRRGRQ 226
           LRP  HG+RVRSGRVLVY KH                    GSSK V KERKYRRGRQ
Sbjct: 181 LRPKGHGVRVRSGRVLVYGKHRRKSVEVGNHSNEIDSFGMYGSSKFVHKERKYRRGRQ 237

[Close]

BLAST of Carg00326 vs. ExPASy TrEMBL
Match: A0A0A0L1V0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G361810 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 2.1e-78
Identity = 170/237 (71.73%), Postives = 188/237 (79.32%), Query Frame = 0


Query: 8   MGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVANLLKMGMV 67
           MGNVASSLAS +F A+ K+FGSPLDFLSG+SCSSVCGSTWDFICYIENFCVANLLKMGMV
Sbjct: 1   MGNVASSLASDVFSAIGKIFGSPLDFLSGRSCSSVCGSTWDFICYIENFCVANLLKMGMV 60

Query: 68  VILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKLASVKRTR 127
            IL+YFVLLLLYL HKIGIF CIGRGLCRMIWTCLASY +AWEYCC FMCIKLASVKRTR
Sbjct: 61  FILSYFVLLLLYLLHKIGIFRCIGRGLCRMIWTCLASYFYAWEYCCGFMCIKLASVKRTR 120

Query: 128 RRRHRRRDLEEELESEEEAKHRYGSSSDSSNDSEKIESRRSKRVSRKRRRSHRGSQTSKT 187
           RR  RRRD+EEE E  EE K R+ S+SDS+N  E +ES+ S+RVS++ RR+HR SQ  K+
Sbjct: 121 RRHVRRRDMEEEFEI-EEGKCRHESTSDSTNVLEHVESKSSRRVSQRWRRNHRDSQRRKS 180

Query: 188 LRPTSHGIRVRSGRVLVYSKH--------------------GSSKIVQKERKYRRGR 225
           LRP  HG+RVRSGRVLVY KH                    GSSK V KERKYRRGR
Sbjct: 181 LRPKGHGVRVRSGRVLVYGKHRRKSVEVGNHLNEIDSFGMYGSSKYVHKERKYRRGR 236

[Close]

BLAST of Carg00326 vs. TAIR 10
Match: AT1G21722.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78922.1); Has 47 Blast hits to 47 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 1; Plants - 42; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 139.4 bits (350), Expect = 3.5e-33
Identity = 92/231 (39.83%), Postives = 129/231 (55.84%), Query Frame = 0


Query: 8   MGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVANLLKMGMV 67
           MGNV  S  +G   ++   FGSPLDFLSGKSCSSVC S WDFICY+ENFCVANL K  ++
Sbjct: 1   MGNVMDSFFTGFSHSIGNFFGSPLDFLSGKSCSSVCPSPWDFICYVENFCVANLAKTALI 60

Query: 68  VILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKLASVKRTR 127
           +IL+YF L  +Y+ +K+G + CI  G  +++W  ++ + +   YCC+F C  L   KR R
Sbjct: 61  LILSYFFLFFIYMLYKVGFWHCIIHGFFKLLWVLVSCWFYMLGYCCSFFCYDLLHSKRRR 120

Query: 128 RRRHRRRDLEEELESEEEAKHRYGSSSDSSNDSEKIESRRSKRVSRKRRRSHRGSQTSKT 187
           RRRH R  +EE+ +             D+S+D + ++   S    R +R   +  +  K+
Sbjct: 121 RRRHNRY-IEEDYD-------------DNSDDDDDVDDDGSFTYHRSKRECRKEERLRKS 180

Query: 188 LRPTSHGIRV------RSGRVLVYSKHGSSKI----VQKERKYRRGRQIRR 229
           LRP +H +RV      RS   L     G S I    V +E K+ R    RR
Sbjct: 181 LRPRNHRVRVGVRKDHRSDSGLSQHADGGSPIHGVRVSRESKFARKVSKRR 217

[Close]

BLAST of Carg00326 vs. TAIR 10
Match: AT1G78922.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 2.6e-12
Identity = 63/226 (27.88%), Postives = 113/226 (50.00%), Query Frame = 0


Query: 8   MGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVANLLKMGMV 67
           MGN     ++ +   +  +F +PL    G+SC  VC   WD  C+IE+FC+ ++ K+ ++
Sbjct: 1   MGNAIGKASNDIGGFIGNIFTAPLKATLGRSCLDVCSGPWDLECFIEHFCLPDIAKLVLM 60

Query: 68  VILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKLASVKRTR 127
             L + +L+ + L  K+GI  C+ + +C+M     A+Y        + +C  L ++ R  
Sbjct: 61  SSLCFIILMFITLLFKLGICQCVVKSICKMSCAACAAYWFDIGEMISCLCHSLTNINRVN 120

Query: 128 RRRHRRRDLEE---ELESEEEAKHRYGSSSDSSNDSEKIE-SRRSKRVSRKRRRSHRGSQ 187
           RRR R  D+E    +  S++E+     SSSDS +  + I   +R +R+  K    H GS 
Sbjct: 121 RRRKRLDDIEATTYDYPSDDES-----SSSDSPSRIDNIRPKQRRRRLGSKHSHHHHGSN 180

Query: 188 TS--KTLRPTSHGIRVRSGRVLVYSKHGSSKIVQKERKYRRGRQIR 228
            +  + +R  S  + VR G        G S+ V++  +  + R+I+
Sbjct: 181 RNNRRLIRLPSRQLSVRVG--------GKSRRVRRSTRKIKSRKIK 213

The following BLAST results are available for this feature:

BLAST of Carg00326 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031669.1	3.1e-116	100.00	Protein HAPLESS 2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6608041.1	1.5e-115	99.56	Protein HAPLESS 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022940192.1	1.4e-111	97.37	uncharacterized protein LOC111445893 [Cucurbita moschata] >XP_022940193.1 unchar...	[more]
XP_023523489.1	3.0e-111	97.36	protein HAPLESS 2 [Cucurbita pepo subsp. pepo] >XP_023523490.1 protein HAPLESS 2...	[more]
XP_022981050.1	1.3e-109	95.61	uncharacterized protein LOC111480312 [Cucurbita maxima] >XP_022981051.1 uncharac...	[more]

BLAST of Carg00326 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg00326 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FIX0	6.6e-112	97.37	uncharacterized protein LOC111445893 OS=Cucurbita moschata OX=3662 GN=LOC1114458...	[more]
A0A6J1IVE5	6.1e-110	95.61	uncharacterized protein LOC111480312 OS=Cucurbita maxima OX=3661 GN=LOC111480312...	[more]
A0A6J1DMF3	5.1e-80	70.61	uncharacterized protein LOC111021352 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A1S4DVV8	1.1e-79	72.27	protein HAPLESS 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487604 PE=4 SV=1	[more]
A0A0A0L1V0	2.1e-78	71.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G361810 PE=4 SV=1	[more]

BLAST of Carg00326 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21722.1	3.5e-33	39.83	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G78922.1	2.6e-12	27.88	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 126..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 214..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..183
None	No IPR available	PANTHER	PTHR35278:SF1	F8K7.16	coord: 8..222
None	No IPR available	PANTHER	PTHR35278	TRANSMEMBRANE PROTEIN-RELATED	coord: 8..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00326-RA	Carg00326-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane