Carg00284 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00284
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L23, chloroplastic
LocationCarg_Chr04: 6372317 .. 6375493 (-)
RNA-Seq ExpressionCarg00284
SyntenyCarg00284
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGCTTCTCCAAGGTCAAGTCATGGTTGGTAGTTTGGAAAATCTATATAAAAGCGTTGAAACTTTGGACCGAACTTACTTTCAGGCAGATGGGCAGATTAGAGACAAGCTTTTGAAGCCCCAAGTTGTGTCATTTTGTAGCTCTACTATGCTGTTGCCTTGCACTACTGATCCACCACCTTTGCCAACAGTTTATTTTTGTAGTCATCCGAGTTTCTTTAGTAATAGCCGATGCCGCTCTATCTACTCCCATGATCCTAACGAAGACTGTCCATCTTGTGGTTATGAAATGAGCAGACAGCTTGAGTATTTGGAGCCACTAACTGAAAACACGACCAACACAAGTAGTAAGAAAGAGGAAGGTTATGTTAAGGGTGTGGTGAGTTACATGGTGATGGATGATTTGAGGGTCATGCCAATGTCCACTATCTCTTGCGTTACATTGTTGAACAAGTTTAAGATCAAAGATGTGATGCTTTGGAGGAACAACTCGTCACTTTGACTGTCGATCAAGTAACTTATGTTCTTCTCTATAGTTTTGTCAAGGGTTATACATCGTTAAATTATATAATGTTTATTATGTTATTACATGTGAATGTAATTTTTTAATTTTTGGTATCTTTTACATTATCAATATTTTTTTTTTATTGCCGTGTGATTTTAATATATTCAAATATGATAACTTGACTTTGTTTTTGTTTGATTGTATTTGTCTGGGACTTAAACTTTTGAGAGCTTCTATGCAGTCAAAGACAGTTCTAACAGATGTTTTCCTCGGGAAGAAGATGGCATAATTTTATGTTTGTTTTCGTTGTTTTGATGTTATCTGTTATGTTTGTTTTCGTAGTTTTTGATGTTTTAAGTTTATGGATTTTAGTTATTAATATATCATTATTAAGTGTTAAATTTCTTATATATATATATATATATTTATAAAATTTTAATTTTAATCTATTAAGTATAATTATTGTTTTTTTTTTAATTAAAAAAATAATAACTCAACAACCCAATCACAATTTCACAGTGGAGTGTTATAGTGTAAATTTTATTCAGATTGTTTATGACATCAACTTAGCAGTTGAAATTTTGAATTATTTAAAAAGATTTTTTTCAAACAAACTCAATACATTTACCCAAATACAATTTTAAGTTTATATTAAACATAAAATCGGTAGTTATATTTCATAGATTAATTAAGTTTAATATAAGTCAAAATTTTATTAATTATATTAAATATCACAAATTTTTAAGTTTGTGTTTATTTAGTCTTTTAATTTTTTAAAGTTAATATATTCTCAAATATTTTATTTTGTGTGAAGTTTAAGTTTTTTTAGTTAAAAGGTAGTTTTTGTAAAATTTATTTGATTTATTAAACTTAAATATTATATGGAATGAAATATTTTGTGTATAGTAGATAGGTGAACATTAAAAAAATATATATTTAAAATTTAAAAACTAAAATTTGGATTAAATTGGTAATTTAATTTATTGGGTTTAAATACTGACGTGGGCTGGCAAATTTGATTGCTTTCGACATTCTTGGGCCAAGACCAAAGTTTCAAAAACAAAAGGTCAGGCCCAGTTTCAAAATCGACCATCGAAGGCCGTATCTAAGATCTCCCTTTTAGAAACCCTAATTCGGCTGCAACCTCCGTCTCACCATCATTCTCTTCGAAGGTATGAATCTTGATCCTTCTTGCCATTGCTGCTAATATTTTCCTCTTTCTTCCTTCCTGCTTTTGGTTTTTCTTCTCATTTTAATTGTTTCTTGTGCGACCAGGTTGATTATTCTGGTCCAGGATCTTCAGCAATGGCTCCTAAAGGTTTGCCCGCATTTTGATTTTGTTTGAATGCGAGATGTTCGTTTATTTCAATTCGTACCTCCATTTGTTTCAATCGAAGTTAGGTGACGTAAATACGTTCCCAGTATTCAAAACCTGGTTTCTGAAATCTACTCTACAACAACTAGTGATTGGTTTACGAGAGTATAGTTAGCTGAAGGGAATAATATCTAGATTTTTTAGTTTATTTGGGATTTAAATCCTCTCTTTTAGGTTGTACTTTTTTCTTGCTTGATGAAAAAAAAAACATCATTTTGAAATGGTTTAGGAAATTTTTGCCATGTTCTTAATGTATTGAATATACTGGTGGAATCTGAGCTTAATAAACTTCTGGGTAATTTTGAGCTTTGGATGCTCTGTTTCTGTTCTTAATTAAGGGATTTTATCTCATCTTTTGCAGCTGACAGTATCAAAAAGGCTGATCCCAAGGCTCAAGCCTTGAAGACTGCCAAGGCAGTGAAGTCTGGTCCAACATTCAAGAAGAAGGCTAAGAAGATTAGAACATCAGTCACATTCCATAGGCCAAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCCAGGATCAGTGCTACTCCAAGGAACAAGTTGGACCAGTATCAAATTCTCAAATATCCACTGACCACAGAATCTGCAATGAAGAAAATTGAGGATAATAACACCCTTGTTTTTATTGTTGACATTCGTGCCGACAAGAAAAAGATCAAGGATGCCGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTGAACACTTTAATCAGGTATACATTGTTCATAAATTTCTATTTCAAAATGTTCATCATCAACTATATAATCTAATGGTTGTTGGGGCCTGATTGTTCTTATCATTTGACCCTTCCATCTTCTACCCATGTACAAATTCTCTATTTACTGATCCATTATGATGAATGATTGTATGCCCTAATGTATGATCCTACATTCTTCCTGGTACACAGGCCAGACGGAACGAAGAAGGCGTATGTTAGGTTAACTCCAGATTATGATGCTCTGGATGTGGCGAACAAGATTGGTATCATATAAACTGCAGAGCTTGAAGCTGCTAGTATTTTCATTGCAATTGTTACATGTTTAAATTTTGGAGAGCATTTTGCAGTAGGACCCAAGTTTTATTTAGCTTTTTTTTTAGTATGTATTGGTATTTGTTTGCTCAGAATACATGGAATGATGGATTATGAATTCCGATAATTTTCTTTGTAGTTTGCTTCAGACTCCATTATGCCATTACTGAATTTTGGTCTTTACAGCTTCTTTTTGGTTTCTTAATTTATGGAATGCAAGTCTTTGGGGATCAATATGTTCTATTAATACC

mRNA sequence

ATGCAAGCTTCTCCAAGAAACCCTAATTCGGCTGCAACCTCCGTCTCACCATCATTCTCTTCGAAGGTTGATTATTCTGGTCCAGGATCTTCAGCAATGGCTCCTAAAGCTGACAGTATCAAAAAGGCTGATCCCAAGGCTCAAGCCTTGAAGACTGCCAAGGCAGTGAAGTCTGGTCCAACATTCAAGAAGAAGGCTAAGAAGATTAGAACATCAGTCACATTCCATAGGCCAAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCCAGGATCAGTGCTACTCCAAGGAACAAGTTGGACCAGTATCAAATTCTCAAATATCCACTGACCACAGAATCTGCAATGAAGAAAATTGAGGATAATAACACCCTTGTTTTTATTGTTGACATTCGTGCCGACAAGAAAAAGATCAAGGATGCCGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTGAACACTTTAATCAGGCCAGACGGAACGAAGAAGGCGTATGTTAGGTTAACTCCAGATTATGATGCTCTGGATGTGGCGAACAAGATTGGTATCATATAAACTGCAGAGCTTGAAGCTGCTAGTATTTTCATTGCAATTGTTACATGTTTAAATTTTGGAGAGCATTTTGCAGTAGGACCCAAGTTTTATTTAGCTTTTTTTTTAGTATGTATTGGTATTTGTTTGCTCAGAATACATGGAATGATGGATTATGAATTCCGATAATTTTCTTTGTAGTTTGCTTCAGACTCCATTATGCCATTACTGAATTTTGGTCTTTACAGCTTCTTTTTGGTTTCTTAATTTATGGAATGCAAGTCTTTGGGGATCAATATGTTCTATTAATACC

Coding sequence (CDS)

ATGCAAGCTTCTCCAAGAAACCCTAATTCGGCTGCAACCTCCGTCTCACCATCATTCTCTTCGAAGGTTGATTATTCTGGTCCAGGATCTTCAGCAATGGCTCCTAAAGCTGACAGTATCAAAAAGGCTGATCCCAAGGCTCAAGCCTTGAAGACTGCCAAGGCAGTGAAGTCTGGTCCAACATTCAAGAAGAAGGCTAAGAAGATTAGAACATCAGTCACATTCCATAGGCCAAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCCAGGATCAGTGCTACTCCAAGGAACAAGTTGGACCAGTATCAAATTCTCAAATATCCACTGACCACAGAATCTGCAATGAAGAAAATTGAGGATAATAACACCCTTGTTTTTATTGTTGACATTCGTGCCGACAAGAAAAAGATCAAGGATGCCGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTGAACACTTTAATCAGGCCAGACGGAACGAAGAAGGCGTATGTTAGGTTAACTCCAGATTATGATGCTCTGGATGTGGCGAACAAGATTGGTATCATATAA

Protein sequence

MQASPRNPNSAATSVSPSFSSKVDYSGPGSSAMAPKADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Homology
[Close]
BLAST of Carg00284 vs. NCBI nr
Match: KAG7031627.1 (60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 345.5 bits (885), Expect = 2.8e-91
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0 

Query: 1   MQASPRNPNSAATSVSPSFSSKVDYSGPGSSAMAPKADSIKKADPKAQALKTAKAVKSGP 60
           MQASPRNPNSAATSVSPSFSSKVDYSGPGSSAMAPKADSIKKADPKAQALKTAKAVKSGP
Sbjct: 1   MQASPRNPNSAATSVSPSFSSKVDYSGPGSSAMAPKADSIKKADPKAQALKTAKAVKSGP 60

Query: 61  TFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIE 120
           TFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIE
Sbjct: 61  TFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIE 120

Query: 121 DNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 180
           DNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN
Sbjct: 121 DNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 180

Query: 181 KIGII 186
           KIGII
Sbjct: 181 KIGII 185

[Close]
BLAST of Carg00284 vs. NCBI nr
Match: KAG6601015.1 (60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 330.1 bits (845), Expect = 1.2e-86
Identity = 176/177 (99.44%), Postives = 177/177 (100.00%), Query Frame = 0 

Query: 6   RNPNSAATSVSPSFSSKVDYSGPGSSAMAPKADSIKKADPKAQALKTAKAVKSGPTFKKK 65
           RNPNSAATSVSPSFSSKVDYSGPGSSAMAPKAD+IKKADPKAQALKTAKAVKSGPTFKKK
Sbjct: 231 RNPNSAATSVSPSFSSKVDYSGPGSSAMAPKADTIKKADPKAQALKTAKAVKSGPTFKKK 290

Query: 66  AKKIRTSVTFHRPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTL 125
           AKKIRTSVTFHRPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTL
Sbjct: 291 AKKIRTSVTFHRPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTL 350

Query: 126 VFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKI 183
           VFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKI
Sbjct: 351 VFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKI 407

[Close]
BLAST of Carg00284 vs. NCBI nr
Match: KAG6600068.1 (60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 297.0 bits (759), Expect = 1.1e-76
Identity = 158/167 (94.61%), Postives = 161/167 (96.41%), Query Frame = 0 

Query: 19  FSSKVDYSGPGSSAMAPKADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRP 78
           F  +V YSGPGSSAMAPKADS KKADPKAQALK AKAVK+GPTFK KAKKIRTSVTFHRP
Sbjct: 38  FEIEVGYSGPGSSAMAPKADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRP 97

Query: 79  KTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKI 138
           KTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKI
Sbjct: 98  KTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKI 157

Query: 139 KDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 186
           KDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 158 KDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 204

[Close]
BLAST of Carg00284 vs. NCBI nr
Match: XP_022957518.1 (60S ribosomal protein L23a-like [Cucurbita moschata])

HSP 1 Score: 290.0 bits (741), Expect = 1.4e-74
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 33  MAPKADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 92
           MAPKADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 93  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 152
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 153 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 186
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Carg00284 vs. NCBI nr
Match: XP_022995723.1 (60S ribosomal protein L23a [Cucurbita maxima])

HSP 1 Score: 287.7 bits (735), Expect = 7.0e-74
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 33  MAPKADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 92
           MAPKADS KKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 93  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 152
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 153 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 186
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Carg00284 vs. ExPASy Swiss-Prot
Match: Q9AT35 (60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.0e-67
Identity = 140/154 (90.91%), Postives = 144/154 (93.51%), Query Frame = 0 

Query: 33  MAP-KADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 92
           M+P K D  KK+D KAQALKTAKAVKSG T  KK KKIRTSVTFHRP+TL KDRNPKYPR
Sbjct: 1   MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPR 60

Query: 93  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 152
           ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120

Query: 153 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 186
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Carg00284 vs. ExPASy Swiss-Prot
Match: Q07761 (60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.7e-67
Identity = 139/154 (90.26%), Postives = 143/154 (92.86%), Query Frame = 0 

Query: 33  MAP-KADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 92
           MAP KAD  KK+DPKAQA K AKAVKSG T KKK++KIRT VTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPAKADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPR 60

Query: 93  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 152
           ISA  RNKLDQY ILKYPLTTESAMKKIEDNNTLVFIVDI+ADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTK 120

Query: 153 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 186
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Carg00284 vs. ExPASy Swiss-Prot
Match: O22644 (60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.1e-66
Identity = 139/154 (90.26%), Postives = 141/154 (91.56%), Query Frame = 0 

Query: 33  MAPKADSIKKADPKAQALKTAKAVKSG-PTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 92
           MAP A   KK D KAQALK AKAVKSG  T +KKAKKIRTSVTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60

Query: 93  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 152
           ISA PRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTK 120

Query: 153 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 186
           KVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154

[Close]
BLAST of Carg00284 vs. ExPASy Swiss-Prot
Match: Q8LD46 (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 253.4 bits (646), Expect = 1.9e-66
Identity = 137/154 (88.96%), Postives = 141/154 (91.56%), Query Frame = 0 

Query: 33  MAP-KADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 92
           M+P K D+ KKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 93  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 152
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 153 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 186
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Carg00284 vs. ExPASy Swiss-Prot
Match: Q9M3C3 (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.1e-65
Identity = 136/154 (88.31%), Postives = 139/154 (90.26%), Query Frame = 0 

Query: 33  MAP-KADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 92
           M+P K D  KKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 93  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 152
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 153 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 186
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Carg00284 vs. ExPASy TrEMBL
Match: A0A0A0KS61 (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G180850 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 3.0e-78
Identity = 161/172 (93.60%), Postives = 165/172 (95.93%), Query Frame = 0 

Query: 14  SVSPSFSSKVDYSGPGSSAMAPKADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSV 73
           S+SP  SS+V +SG GSSAMAPKADS KKADPKAQALKTAKAVKSGPTFKKKAKKIRTSV
Sbjct: 41  SISPFLSSQVSFSGQGSSAMAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSV 100

Query: 74  TFHRPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA 133
           TFHRPKTLKKDRNPKYPRIS TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA
Sbjct: 101 TFHRPKTLKKDRNPKYPRISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA 160

Query: 134 DKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 186
           +KK IKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 161 NKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212

[Close]
BLAST of Carg00284 vs. ExPASy TrEMBL
Match: A0A6J1H0G0 (50S ribosomal protein L23, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111458895 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.8e-75
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 33  MAPKADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 92
           MAPKADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 93  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 152
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 153 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 186
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Carg00284 vs. ExPASy TrEMBL
Match: A0A6J1K8U2 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111491145 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.4e-74
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 33  MAPKADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 92
           MAPKADS KKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 93  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 152
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 153 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 186
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Carg00284 vs. ExPASy TrEMBL
Match: A0A6J1DJ76 (50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021582 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 5.8e-74
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 33  MAPKADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 92
           MAPKAD+ KKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 93  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 152
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 153 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 186
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Carg00284 vs. ExPASy TrEMBL
Match: A0A5D3C5W3 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002640 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.2e-73
Identity = 150/153 (98.04%), Postives = 151/153 (98.69%), Query Frame = 0 

Query: 33  MAPKADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 92
           MAPKADS KKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 93  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 152
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 153 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 186
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Carg00284 vs. TAIR 10
Match: AT2G39460.1 (ribosomal protein L23AA )

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-67
Identity = 137/154 (88.96%), Postives = 141/154 (91.56%), Query Frame = 0 

Query: 33  MAP-KADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 92
           M+P K D+ KKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 93  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 152
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 153 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 186
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Carg00284 vs. TAIR 10
Match: AT2G39460.2 (ribosomal protein L23AA )

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-67
Identity = 137/154 (88.96%), Postives = 141/154 (91.56%), Query Frame = 0 

Query: 33  MAP-KADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 92
           M+P K D+ KKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 93  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 152
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 153 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 186
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Carg00284 vs. TAIR 10
Match: AT3G55280.1 (ribosomal protein L23AB )

HSP 1 Score: 250.0 bits (637), Expect = 1.5e-66
Identity = 136/154 (88.31%), Postives = 139/154 (90.26%), Query Frame = 0 

Query: 33  MAP-KADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 92
           M+P K D  KKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 93  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 152
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 153 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 186
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Carg00284 vs. TAIR 10
Match: AT3G55280.2 (ribosomal protein L23AB )

HSP 1 Score: 250.0 bits (637), Expect = 1.5e-66
Identity = 136/154 (88.31%), Postives = 139/154 (90.26%), Query Frame = 0 

Query: 33  MAP-KADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 92
           M+P K D  KKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 93  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 152
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 153 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 186
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Carg00284 vs. TAIR 10
Match: AT3G55280.3 (ribosomal protein L23AB )

HSP 1 Score: 238.4 bits (607), Expect = 4.5e-63
Identity = 132/154 (85.71%), Postives = 135/154 (87.66%), Query Frame = 0 

Query: 33  MAP-KADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 92
           M+P K D  KKADPKA+ALK AKAVKSG        KIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQI------KIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 93  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 152
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 153 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 186
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 148

The following BLAST results are available for this feature:
BLAST of Carg00284 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031627.12.8e-91100.0060S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6601015.11.2e-8699.4460S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG6600068.11.1e-7694.6160S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022957518.11.4e-74100.0060S ribosomal protein L23a-like [Cucurbita moschata][more]
XP_022995723.17.0e-7499.3560S ribosomal protein L23a [Cucurbita maxima][more]
BLAST of Carg00284 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9AT351.0e-6790.9160S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1[more]
Q077611.7e-6790.2660S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1[more]
O226441.1e-6690.2660S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1[more]
Q8LD461.9e-6688.9660S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=... [more]
Q9M3C32.1e-6588.3160S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=... [more]
BLAST of Carg00284 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KS613.0e-7893.6050S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G180... [more]
A0A6J1H0G06.8e-75100.0050S ribosomal protein L23, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1K8U23.4e-7499.3550S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11149... [more]
A0A6J1DJ765.8e-7498.6950S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A5D3C5W32.2e-7398.0450S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ... [more]
BLAST of Carg00284 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G39460.11.4e-6788.96ribosomal protein L23AA [more]
AT2G39460.21.4e-6788.96ribosomal protein L23AA [more]
AT3G55280.11.5e-6688.31ribosomal protein L23AB [more]
AT3G55280.21.5e-6688.31ribosomal protein L23AB [more]
AT3G55280.34.5e-6385.71ribosomal protein L23AB [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019985Ribosomal protein L23TIGRFAMTIGR03636TIGR03636coord: 109..185
e-value: 8.0E-29
score: 97.8
IPR005633Ribosomal protein L23/L25, N-terminalPFAMPF03939Ribosomal_L23eNcoord: 46..94
e-value: 4.0E-18
score: 65.4
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 66..185
e-value: 6.9E-53
score: 179.8
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 105..166
e-value: 2.9E-14
score: 53.1
IPR013025Ribosomal protein L25/L23PANTHERPTHR1162060S RIBOSOMAL PROTEIN L23Acoord: 33..185
IPR013025Ribosomal protein L25/L23HAMAPMF_01369_ARibosomal_L23_Acoord: 105..185
score: 22.356056
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..70
NoneNo IPR availablePANTHERPTHR11620:SF7860S RIBOSOMAL PROTEIN L23A-2coord: 33..185
IPR001014Ribosomal protein L23/L25, conserved sitePROSITEPS00050RIBOSOMAL_L23coord: 163..178
IPR012678Ribosomal protein L23/L15e core domain superfamilySUPERFAMILY54189Ribosomal proteins S24e, L23 and L15ecoord: 103..178

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00284-RACarg00284-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome