Carg00253 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00253
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	LOB domain-containing protein
Location	Carg_Chr04: 6196966 .. 6197695 (-)
RNA-Seq Expression	Carg00253
Synteny	Carg00253

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTACTTAACTCTTATGATTCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCTTGTGGTGCCTGCAAGTTTCTAAGGCGAAAATGCAGCGATCAATGTGTATTTGCTCCTTTGTTCAGCTATGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGAGCTAGTAATGTGTCCAAGCTTCTGTTGCATCTCCCCATGCATGTGCGCAGCCAGGCTGCTATTACCGTCACTTATGAAGCTCTTGAGCGCATGCGAGATCCCGCCAATGGCTGCGTCTTGCATATCTTCGCGTTGCAGCAAGAGGTTGTTTCTCGATCCTCTAAACATTTAGACACCTCATGGGTTTTTAAAATGTTTTTAAATCTTTCTGTTGCAGGTGGCCAGCTTGCAGGAGGAGATACAAATTCTGGGGACCCAAATAGCCAACCTCCTCACCACCGGCGCCGCCATTTCAGAAGTGGAGAATCCATTTATAGAGATGAATGATTTTGGGATGAACTCAAACCATTGTCAAAATGAGCTGCCTTCTCAGCTGCTTCCCTACCAAACTTCTGATGATGTCCAAAAGGATGATCAAATGATATCTCCATTGCTTTGTTTAGGGGAAAAAGATGGAGGCCTTGGGTTCTGCCACTCGAATCATGTTGTTGAGACATCAGGCTTTCATGTTTCAGTTGACGAGAATTTTGGTGCCTATCCATGGATACTTGGATGA

mRNA sequence

ATGACTGTACTTAACTCTTATGATTCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCTTGTGGTGCCTGCAAGTTTCTAAGGCGAAAATGCAGCGATCAATGTGTATTTGCTCCTTTGTTCAGCTATGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGAGCTAGTAATGTGTCCAAGCTTCTGTTGCATCTCCCCATGCATGTGCGCAGCCAGGCTGCTATTACCGTCACTTATGAAGCTCTTGAGCGCATGCGAGATCCCGCCAATGGCTGCGTCTTGCATATCTTCGCGTTGCAGCAAGAGGTGGCCAGCTTGCAGGAGGAGATACAAATTCTGGGGACCCAAATAGCCAACCTCCTCACCACCGGCGCCGCCATTTCAGAAGTGGAGAATCCATTTATAGAGATGAATGATTTTGGGATGAACTCAAACCATTGTCAAAATGAGCTGCCTTCTCAGCTGCTTCCCTACCAAACTTCTGATGATGTCCAAAAGGATGATCAAATGATATCTCCATTGCTTTGTTTAGGGGAAAAAGATGGAGGCCTTGGGTTCTGCCACTCGAATCATGTTGTTGAGACATCAGGCTTTCATGTTTCAGTTGACGAGAATTTTGGTGCCTATCCATGGATACTTGGATGA

Coding sequence (CDS)

ATGACTGTACTTAACTCTTATGATTCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCTTGTGGTGCCTGCAAGTTTCTAAGGCGAAAATGCAGCGATCAATGTGTATTTGCTCCTTTGTTCAGCTATGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGAGCTAGTAATGTGTCCAAGCTTCTGTTGCATCTCCCCATGCATGTGCGCAGCCAGGCTGCTATTACCGTCACTTATGAAGCTCTTGAGCGCATGCGAGATCCCGCCAATGGCTGCGTCTTGCATATCTTCGCGTTGCAGCAAGAGGTGGCCAGCTTGCAGGAGGAGATACAAATTCTGGGGACCCAAATAGCCAACCTCCTCACCACCGGCGCCGCCATTTCAGAAGTGGAGAATCCATTTATAGAGATGAATGATTTTGGGATGAACTCAAACCATTGTCAAAATGAGCTGCCTTCTCAGCTGCTTCCCTACCAAACTTCTGATGATGTCCAAAAGGATGATCAAATGATATCTCCATTGCTTTGTTTAGGGGAAAAAGATGGAGGCCTTGGGTTCTGCCACTCGAATCATGTTGTTGAGACATCAGGCTTTCATGTTTCAGTTGACGAGAATTTTGGTGCCTATCCATGGATACTTGGATGA

Protein sequence

MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISEVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLCLGEKDGGLGFCHSNHVVETSGFHVSVDENFGAYPWILG

Homology

[Close]

BLAST of Carg00253 vs. NCBI nr
Match: KAG7031596.1 (LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 434.9 bits (1117), Expect = 4.2e-118
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120
           NVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ
Sbjct: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120

Query: 121 IANLLTTGAAISEVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC 180
           IANLLTTGAAISEVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC
Sbjct: 121 IANLLTTGAAISEVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC 180

Query: 181 LGEKDGGLGFCHSNHVVETSGFHVSVDENFGAYPWILG 219
           LGEKDGGLGFCHSNHVVETSGFHVSVDENFGAYPWILG
Sbjct: 181 LGEKDGGLGFCHSNHVVETSGFHVSVDENFGAYPWILG 218

[Close]

BLAST of Carg00253 vs. NCBI nr
Match: KAG6600983.1 (LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 425.6 bits (1093), Expect = 2.5e-115
Identity = 214/218 (98.17%), Postives = 215/218 (98.62%), Query Frame = 0


Query: 1   MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120
           NVSKLLLHLPMHVR+QAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ
Sbjct: 61  NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120

Query: 121 IANLLTTGAAISEVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC 180
           IANLLTTGAAIS VENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC
Sbjct: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC 180

Query: 181 LGEKDGGLGFCHSNHVVETSGFHVSVDENFGAYPWILG 219
           LGEKDGG GF HSNHVVETSGFHVSVDENFGAYPWILG
Sbjct: 181 LGEKDGGFGFYHSNHVVETSGFHVSVDENFGAYPWILG 218

[Close]

BLAST of Carg00253 vs. NCBI nr
Match: XP_023006079.1 (LOB domain-containing protein 33-like [Cucurbita maxima])

HSP 1 Score: 415.2 bits (1066), Expect = 3.4e-112
Identity = 208/218 (95.41%), Postives = 209/218 (95.87%), Query Frame = 0


Query: 1   MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           M VLNS+DSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MAVLNSFDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120
           NVSKLLLHLPMHVRSQAAITVTYEALERMRDPA GCVLHIFALQQEVASLQEEIQILGTQ
Sbjct: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQ 120

Query: 121 IANLLTTGAAISEVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC 180
           IANLLTTGAAIS VENPFIEMNDFGMNSNHCQNELPSQLLPYQT DD QKDD MISPLLC
Sbjct: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTCDDAQKDDPMISPLLC 180

Query: 181 LGEKDGGLGFCHSNHVVETSGFHVSVDENFGAYPWILG 219
           LGEKDGG GFCHSNHVV TSGFHVSVDENFG YPWILG
Sbjct: 181 LGEKDGGFGFCHSNHVVHTSGFHVSVDENFGGYPWILG 218

[Close]

BLAST of Carg00253 vs. NCBI nr
Match: XP_022957254.1 (LOB domain-containing protein 33-like [Cucurbita moschata])

HSP 1 Score: 413.3 bits (1061), Expect = 1.3e-111
Identity = 208/218 (95.41%), Postives = 211/218 (96.79%), Query Frame = 0


Query: 1   MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           MTVLNSYD   SSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MTVLNSYD---SSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120
           NVSKLLLHLPMHVR+QAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ
Sbjct: 61  NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120

Query: 121 IANLLTTGAAISEVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC 180
           IANLLTTGAAIS VENPFIEMNDFGMNSNHCQNELPSQLLPY+TSDDVQKDDQMISPLLC
Sbjct: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYRTSDDVQKDDQMISPLLC 180

Query: 181 LGEKDGGLGFCHSNHVVETSGFHVSVDENFGAYPWILG 219
           LGEKDGG GFCHSNHVVETSGF VSV+ENFG YPWILG
Sbjct: 181 LGEKDGGFGFCHSNHVVETSGFDVSVEENFGGYPWILG 215

[Close]

BLAST of Carg00253 vs. NCBI nr
Match: XP_023548244.1 (LOB domain-containing protein 33-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 388.7 bits (997), Expect = 3.4e-104
Identity = 204/223 (91.48%), Postives = 205/223 (91.93%), Query Frame = 0


Query: 1   MTVLNSYD---SSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVF 60
           MTVLNSYD   SSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVF
Sbjct: 1   MTVLNSYDSSSSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVF 60

Query: 61  GASNVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQIL 120
           GASNVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCV HIFALQQEVASLQEEIQIL
Sbjct: 61  GASNVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVFHIFALQQEVASLQEEIQIL 120

Query: 121 GTQIANLLTTGAAISEVENPFIEMN--DFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMI 180
           GTQIAN LTTGAAIS VENPFIEMN  DFGMNSNH QN    QLLPYQTSD VQKDDQMI
Sbjct: 121 GTQIANFLTTGAAISAVENPFIEMNDYDFGMNSNHSQN----QLLPYQTSDGVQKDDQMI 180

Query: 181 SPLLCLGEKDGGLGFCHSNHVVETSGFHVSVDENFGAYPWILG 219
           SPLLCLGEKDGG GFCHSNHVVE SGF VSV+ENFG YPWILG
Sbjct: 181 SPLLCLGEKDGGFGFCHSNHVVERSGFDVSVEENFGGYPWILG 219

[Close]

BLAST of Carg00253 vs. ExPASy Swiss-Prot
Match: Q9LHS8 (LOB domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=LBD33 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.8e-39
Identity = 80/122 (65.57%), Postives = 97/122 (79.51%), Query Frame = 0


Query: 15  SSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 74
           +S  SSCGACKFLRRKC+  CVF+P FSY++A+SHFAAVHKVFGASNVSK LLHLP H R
Sbjct: 2   ASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQR 61

Query: 75  SQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISEV 134
           + AAIT++YEAL RMRDP  GCV HIFAL Q+V +LQEEI+ LG+Q+ N   +    S++
Sbjct: 62  NIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFSYSNQNGSQL 121

Query: 135 EN 137
            N
Sbjct: 122 NN 123

[Close]

BLAST of Carg00253 vs. ExPASy Swiss-Prot
Match: Q9M2J7 (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 5.1e-34
Identity = 76/129 (58.91%), Postives = 97/129 (75.19%), Query Frame = 0


Query: 11  SSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLP 70
           +SSSSSS S CGACKFLRRKC+  CVFAP F +++  SHFAA+HKVFGASN SKLL HLP
Sbjct: 2   TSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLP 61

Query: 71  MHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIA-NLLTTGA 130
           +  R +AAIT++YEA  R++DP  GCV HIFALQQ+V +LQ E++IL  Q A +++   +
Sbjct: 62  ISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADS 121

Query: 131 AISEVENPF 139
             SE  N +
Sbjct: 122 PTSENPNSY 130

[Close]

BLAST of Carg00253 vs. ExPASy Swiss-Prot
Match: Q9SLB7 (LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.0e-31
Identity = 70/135 (51.85%), Postives = 94/135 (69.63%), Query Frame = 0


Query: 9   SSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLH 68
           S + +++ + S CGACKFLRRKC+  C+FAP FS ++  + FAA+HKVFGASNVSKLLL+
Sbjct: 4   SGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLN 63

Query: 69  LPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTG 128
           +P+H R +A +T+ YEA  R+ DP  GCV HIFALQQ+VA LQ ++  +  QIA   T+ 
Sbjct: 64  VPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQTSA 123

Query: 129 AA----ISEVENPFI 140
           A      SE  N F+
Sbjct: 124 AGDLRHSSESTNQFM 138

[Close]

BLAST of Carg00253 vs. ExPASy Swiss-Prot
Match: O22131 (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 136.0 bits (341), Expect = 5.2e-31
Identity = 68/119 (57.14%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 6   SYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKL 65
           S     SS       CGACKFLRRKC   C+FAP F  ++ +++FAAVHKVFGASNVSKL
Sbjct: 23  SSGGGGSSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKL 82

Query: 66  LLHLPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANL 125
           LLH+P+H RS A +T+ YEA  R+RDP  GCV HIFALQQ+V +LQ E+  L   +A+L
Sbjct: 83  LLHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASL 141

[Close]

BLAST of Carg00253 vs. ExPASy Swiss-Prot
Match: Q9SLB6 (LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.0e-30
Identity = 82/192 (42.71%), Postives = 111/192 (57.81%), Query Frame = 0


Query: 15  SSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 74
           + S S CGACKFLRR+C   CVFAP F +++  SHFAA+H+VFGASN SKLL HLPM  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 75  SQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISEV 134
            +AA T+ YEA  R +DP  GCV HIF+LQQ+V +LQ +++IL  Q         ++  +
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQ------SMMAI 121

Query: 135 ENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLCLGEKDGGL----GF 194
           ++P IE      N N+ Q+  P  L   Q S D+       S   C  E++  L      
Sbjct: 122 DSPSIE------NPNYYQDTKPQYL---QESHDLHHHHLTTSN--CQTEQNSDLKNIMTS 176

Query: 195 CHSNHVVETSGF 203
           C+    +ET+ F
Sbjct: 182 CYHQMEIETTPF 176

[Close]

BLAST of Carg00253 vs. ExPASy TrEMBL
Match: A0A6J1L156 (LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC111498911 PE=3 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.7e-112
Identity = 208/218 (95.41%), Postives = 209/218 (95.87%), Query Frame = 0


Query: 1   MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           M VLNS+DSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MAVLNSFDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120
           NVSKLLLHLPMHVRSQAAITVTYEALERMRDPA GCVLHIFALQQEVASLQEEIQILGTQ
Sbjct: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQ 120

Query: 121 IANLLTTGAAISEVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC 180
           IANLLTTGAAIS VENPFIEMNDFGMNSNHCQNELPSQLLPYQT DD QKDD MISPLLC
Sbjct: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTCDDAQKDDPMISPLLC 180

Query: 181 LGEKDGGLGFCHSNHVVETSGFHVSVDENFGAYPWILG 219
           LGEKDGG GFCHSNHVV TSGFHVSVDENFG YPWILG
Sbjct: 181 LGEKDGGFGFCHSNHVVHTSGFHVSVDENFGGYPWILG 218

[Close]

BLAST of Carg00253 vs. ExPASy TrEMBL
Match: A0A6J1H1E9 (LOB domain-containing protein 33-like OS=Cucurbita moschata OX=3662 GN=LOC111458694 PE=3 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.3e-112
Identity = 208/218 (95.41%), Postives = 211/218 (96.79%), Query Frame = 0


Query: 1   MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           MTVLNSYD   SSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MTVLNSYD---SSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120
           NVSKLLLHLPMHVR+QAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ
Sbjct: 61  NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120

Query: 121 IANLLTTGAAISEVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC 180
           IANLLTTGAAIS VENPFIEMNDFGMNSNHCQNELPSQLLPY+TSDDVQKDDQMISPLLC
Sbjct: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYRTSDDVQKDDQMISPLLC 180

Query: 181 LGEKDGGLGFCHSNHVVETSGFHVSVDENFGAYPWILG 219
           LGEKDGG GFCHSNHVVETSGF VSV+ENFG YPWILG
Sbjct: 181 LGEKDGGFGFCHSNHVVETSGFDVSVEENFGGYPWILG 215

[Close]

BLAST of Carg00253 vs. ExPASy TrEMBL
Match: A0A0A0KNX8 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182740 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 4.3e-76
Identity = 156/217 (71.89%), Postives = 179/217 (82.49%), Query Frame = 0


Query: 13  SSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMH 72
           +SS+SS+SCGACKFLRRKCSDQCVFAP FSYDEATSHFAAVHKVFGASNVSKLLLHLP H
Sbjct: 5   NSSNSSTSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTH 64

Query: 73  VRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAIS 132
           +RS AAITV YEALERMRDP  GCV HIFALQQEVASLQEEI+ILG+QIAN  TTG +I+
Sbjct: 65  IRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFATTGGSIA 124

Query: 133 EVENPFI-------EMNDFG-MNSNHCQNELPSQLLPYQTSDDVQKDD---QMISPLLCL 192
            V+NPFI       +M+ FG MN+N+ QNEL S+ LPYQ+ D+VQ D+   QMISPL CL
Sbjct: 125 AVDNPFIDQVQVPQQMDGFGMMNTNYYQNELVSE-LPYQSFDNVQNDNTTAQMISPLFCL 184

Query: 193 GEKDGGLGFCHSNHVVETSGFHVSVDENFGAYPWILG 219
           GE+DG   F +SN+VVE+S F VSV+EN   YPWI+G
Sbjct: 185 GEEDGVFEFSNSNNVVESSAFDVSVEENCIGYPWIVG 220

[Close]

BLAST of Carg00253 vs. ExPASy TrEMBL
Match: A0A1S3CGM1 (LOB domain-containing protein 33-like OS=Cucumis melo OX=3656 GN=LOC103500235 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 2.1e-75
Identity = 156/218 (71.56%), Postives = 178/218 (81.65%), Query Frame = 0


Query: 13  SSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMH 72
           +SS++SSSCGACKFLRRKCSDQCVFAP FSYDEATSHFAAVHKVFGASNVSKLLLHLP H
Sbjct: 5   NSSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTH 64

Query: 73  VRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAIS 132
            RS AAITV YEALERMRDP  GC+ HIFALQQEV SLQEEI+ILG+QIANL TTG +I+
Sbjct: 65  TRSHAAITVAYEALERMRDPTYGCIAHIFALQQEVVSLQEEIEILGSQIANLATTGGSIA 124

Query: 133 EVENPFI--------EMNDFGM-NSNHCQNELPSQLLPYQTSDDVQKDD--QMISPLLCL 192
            VENPFI        +M+ F M N+N+ QNEL S+ LPYQ+ D++Q D+  QMISPL CL
Sbjct: 125 AVENPFIDQVVQVSQQMDGFEMTNTNYYQNELASE-LPYQSFDNIQNDNTAQMISPLFCL 184

Query: 193 GEKDGGLGFCHSNHVVE-TSGFHVSVDENFGAYPWILG 219
           GE+DG   FC+SN+VVE TS F VSV+EN   YPWI+G
Sbjct: 185 GEEDGVFEFCNSNNVVESTSAFDVSVEENCVGYPWIVG 221

[Close]

BLAST of Carg00253 vs. ExPASy TrEMBL
Match: A0A6J1K6X9 (LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC111491723 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 3.6e-67
Identity = 148/214 (69.16%), Postives = 167/214 (78.04%), Query Frame = 0


Query: 9   SSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLH 68
           SSSSSSSSSSSSCGACKFLRRKCS+ CVFAP F+YDEATSHFAAVHKVFGASNVSKLLLH
Sbjct: 6   SSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLH 65

Query: 69  LPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTG 128
           LPMHVRS AAITV+YEALERMRDP  GCV HIF LQQE+ SLQEEI +LG+QIAN  T  
Sbjct: 66  LPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDM 125

Query: 129 AAISEVENPFIE------MNDFGMNSNHCQNELPSQLLPYQTSDDVQ-KDDQMISPLLCL 188
             ++ VENP +E      +N+  MN+N  QNEL SQL    T D+VQ  D QMISPL C+
Sbjct: 126 DNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQL---PTFDEVQINDAQMISPLFCI 185

Query: 189 GEKDGGLGFCHSNHVVETSGFHVSVDENFGAYPW 216
           GE++G  G C+ N+ +E S F VSVDENF AY W
Sbjct: 186 GEEEGFFG-CNPNNAMENSAFDVSVDENF-AYLW 214

[Close]

BLAST of Carg00253 vs. TAIR 10
Match: AT5G06080.1 (LOB domain-containing protein 33 )

HSP 1 Score: 162.2 bits (409), Expect = 4.9e-40
Identity = 80/122 (65.57%), Postives = 97/122 (79.51%), Query Frame = 0


Query: 15  SSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 74
           +S  SSCGACKFLRRKC+  CVF+P FSY++A+SHFAAVHKVFGASNVSK LLHLP H R
Sbjct: 2   ASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQR 61

Query: 75  SQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISEV 134
           + AAIT++YEAL RMRDP  GCV HIFAL Q+V +LQEEI+ LG+Q+ N   +    S++
Sbjct: 62  NIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFSYSNQNGSQL 121

Query: 135 EN 137
            N
Sbjct: 122 NN 123

[Close]

BLAST of Carg00253 vs. TAIR 10
Match: AT3G58190.1 (lateral organ boundaries-domain 29 )

HSP 1 Score: 146.0 bits (367), Expect = 3.6e-35
Identity = 76/129 (58.91%), Postives = 97/129 (75.19%), Query Frame = 0


Query: 11  SSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLP 70
           +SSSSSS S CGACKFLRRKC+  CVFAP F +++  SHFAA+HKVFGASN SKLL HLP
Sbjct: 2   TSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLP 61

Query: 71  MHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIA-NLLTTGA 130
           +  R +AAIT++YEA  R++DP  GCV HIFALQQ+V +LQ E++IL  Q A +++   +
Sbjct: 62  ISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADS 121

Query: 131 AISEVENPF 139
             SE  N +
Sbjct: 122 PTSENPNSY 130

[Close]

BLAST of Carg00253 vs. TAIR 10
Match: AT2G42430.1 (lateral organ boundaries-domain 16 )

HSP 1 Score: 136.3 bits (342), Expect = 2.9e-32
Identity = 70/135 (51.85%), Postives = 94/135 (69.63%), Query Frame = 0


Query: 9   SSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLH 68
           S + +++ + S CGACKFLRRKC+  C+FAP FS ++  + FAA+HKVFGASNVSKLLL+
Sbjct: 4   SGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLN 63

Query: 69  LPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTG 128
           +P+H R +A +T+ YEA  R+ DP  GCV HIFALQQ+VA LQ ++  +  QIA   T+ 
Sbjct: 64  VPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQTSA 123

Query: 129 AA----ISEVENPFI 140
           A      SE  N F+
Sbjct: 124 AGDLRHSSESTNQFM 138

[Close]

BLAST of Carg00253 vs. TAIR 10
Match: AT2G45420.1 (LOB domain-containing protein 18 )

HSP 1 Score: 136.0 bits (341), Expect = 3.7e-32
Identity = 68/119 (57.14%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 6   SYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKL 65
           S     SS       CGACKFLRRKC   C+FAP F  ++ +++FAAVHKVFGASNVSKL
Sbjct: 23  SSGGGGSSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKL 82

Query: 66  LLHLPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANL 125
           LLH+P+H RS A +T+ YEA  R+RDP  GCV HIFALQQ+V +LQ E+  L   +A+L
Sbjct: 83  LLHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASL 141

[Close]

BLAST of Carg00253 vs. TAIR 10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 134.0 bits (336), Expect = 1.4e-31
Identity = 82/192 (42.71%), Postives = 111/192 (57.81%), Query Frame = 0


Query: 15  SSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 74
           + S S CGACKFLRR+C   CVFAP F +++  SHFAA+H+VFGASN SKLL HLPM  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 75  SQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISEV 134
            +AA T+ YEA  R +DP  GCV HIF+LQQ+V +LQ +++IL  Q         ++  +
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQ------SMMAI 121

Query: 135 ENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLCLGEKDGGL----GF 194
           ++P IE      N N+ Q+  P  L   Q S D+       S   C  E++  L      
Sbjct: 122 DSPSIE------NPNYYQDTKPQYL---QESHDLHHHHLTTSN--CQTEQNSDLKNIMTS 176

Query: 195 CHSNHVVETSGF 203
           C+    +ET+ F
Sbjct: 182 CYHQMEIETTPF 176

The following BLAST results are available for this feature:

BLAST of Carg00253 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031596.1	4.2e-118	100.00	LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. argyros...	[more]
KAG6600983.1	2.5e-115	98.17	LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_023006079.1	3.4e-112	95.41	LOB domain-containing protein 33-like [Cucurbita maxima]	[more]
XP_022957254.1	1.3e-111	95.41	LOB domain-containing protein 33-like [Cucurbita moschata]	[more]
XP_023548244.1	3.4e-104	91.48	LOB domain-containing protein 33-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg00253 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHS8	6.8e-39	65.57	LOB domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=LBD33 PE=2 S...	[more]
Q9M2J7	5.1e-34	58.91	LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S...	[more]
Q9SLB7	4.0e-31	51.85	LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 S...	[more]
O22131	5.2e-31	57.14	LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S...	[more]
Q9SLB6	2.0e-30	42.71	LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 S...	[more]

BLAST of Carg00253 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L156	1.7e-112	95.41	LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC11149891...	[more]
A0A6J1H1E9	6.3e-112	95.41	LOB domain-containing protein 33-like OS=Cucurbita moschata OX=3662 GN=LOC111458...	[more]
A0A0A0KNX8	4.3e-76	71.89	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182740 PE=3 SV...	[more]
A0A1S3CGM1	2.1e-75	71.56	LOB domain-containing protein 33-like OS=Cucumis melo OX=3656 GN=LOC103500235 PE...	[more]
A0A6J1K6X9	3.6e-67	69.16	LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC11149172...	[more]

BLAST of Carg00253 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06080.1	4.9e-40	65.57	LOB domain-containing protein 33	[more]
AT3G58190.1	3.6e-35	58.91	lateral organ boundaries-domain 29	[more]
AT2G42430.1	2.9e-32	51.85	lateral organ boundaries-domain 16	[more]
AT2G45420.1	3.7e-32	57.14	LOB domain-containing protein 18	[more]
AT2G42440.1	1.4e-31	42.71	Lateral organ boundaries (LOB) domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 100..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR31529	LOB DOMAIN CONTAINING PROTEIN	coord: 17..161
None	No IPR available	PANTHER	PTHR31529:SF50	LOB DOMAIN-CONTAINING PROTEIN 33	coord: 17..161
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 20..116 e-value: 4.0E-32 score: 110.7
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 19..121 score: 21.317673

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00253-RA	Carg00253-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus