Carg00202 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00202
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	LOB domain-containing protein
Location	Carg_Chr04: 5879567 .. 5880708 (-)
RNA-Seq Expression	Carg00202
Synteny	Carg00202

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGCAATTCGCCGTGCGCCTCGTGCAAACTCCTCCGGCGGCGGTGCGCCAAAGACTGCATTTTTGCTCCCTATTTCCCCTCCGATGACCCCCACAAGTTTGCTATTGTTCATAAGGTTTTCGGTGCCAGCAATGTCAGCAAAATGTTGCAGGTTCTTCTTCTTCTTCGTCTTTGTCTCGTTGGTTTTCTCAAGTTTTGGGTTTCGGGTTTCGAGTATTTTCCTTGTTTTATTGAAAAAAAGAGGCGATATTAATTTGACTTTTCGGTAATATCTTTACTGGCACGAAACTTTTATTTCATAGTTAAAATGTAATTAAATTAATTTTATGTTTTTTTTGGAATGTCAACAAAACTTAAAACATGAATTTTTTTTTTTTTTTTTATGTTTTCTTTATTCTGGTCGACATGTTCACTAATACAAAAAAATTTAATTAAAACATGAAAAATACAATTTGAAATATAAGTTTTTAGGCTCGAGAGTTAGACCATTTGGGATAAGCCTAAAACACGAGCTTAAAGACAAACTTTTCTCACTGTTCTTTTCATTCTCGTCGGTATGTTTATAAATATAAGTTTGTTTTTCAAAACATGAAATATATAATGAAAAAAAAAAAACACAATATTAAAGCATAAGAGTTCTCTTCTGTTATGATCGAAACTCTCGGGACTCGTTTACTACGAGTTTCTCTACTAATTTGAAACGTTTGTTGAGTAACTTAAAAGTAAGAGGAGAATATTTATTTAATAAAAAATAAAAAAAGAAATAATTTTGATGATGATTTGTTGAAACAGGAACTGCCAGTGCAGCAAAGAGGCGACGCCGTGATGAGCCTAGTTTATGAGGCAAGTGCAAGAGTGAGGGACCCAGTTTATGGCTGCGTAGGGGCAATTTCGTACTTACAAAATCAAGTCTCACAGCTACAGATGCAATTGGCTGTCGCTCAAGCTGAGATTCTTTGCATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGACGAGAAACCCCCCACTCTTCTACTCCCCCCGCCGTCATCGCCGCCGTCTCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGATGCCATTTTTGGACATGACATCGTTTCTTAA

mRNA sequence

ATGGGTGGCAATTCGCCGTGCGCCTCGTGCAAACTCCTCCGGCGGCGGTGCGCCAAAGACTGCATTTTTGCTCCCTATTTCCCCTCCGATGACCCCCACAAGTTTGCTATTGTTCATAAGGTTTTCGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCAGTGCAGCAAAGAGGCGACGCCGTGATGAGCCTAGTTTATGAGGCAAGTGCAAGAGTGAGGGACCCAGTTTATGGCTGCGTAGGGGCAATTTCGTACTTACAAAATCAAGTCTCACAGCTACAGATGCAATTGGCTGTCGCTCAAGCTGAGATTCTTTGCATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGACGAGAAACCCCCCACTCTTCTACTCCCCCCGCCGTCATCGCCGCCGTCTCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGATGCCATTTTTGGACATGACATCGTTTCTTAA

Coding sequence (CDS)

ATGGGTGGCAATTCGCCGTGCGCCTCGTGCAAACTCCTCCGGCGGCGGTGCGCCAAAGACTGCATTTTTGCTCCCTATTTCCCCTCCGATGACCCCCACAAGTTTGCTATTGTTCATAAGGTTTTCGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCAGTGCAGCAAAGAGGCGACGCCGTGATGAGCCTAGTTTATGAGGCAAGTGCAAGAGTGAGGGACCCAGTTTATGGCTGCGTAGGGGCAATTTCGTACTTACAAAATCAAGTCTCACAGCTACAGATGCAATTGGCTGTCGCTCAAGCTGAGATTCTTTGCATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGACGAGAAACCCCCCACTCTTCTACTCCCCCCGCCGTCATCGCCGCCGTCTCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGATGCCATTTTTGGACATGACATCGTTTCTTAA

Protein sequence

MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHSDEKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS

Homology

[Close]

BLAST of Carg00202 vs. NCBI nr
Match: XP_022957028.1 (LOB domain-containing protein 12-like [Cucurbita moschata] >KAG6600910.1 LOB domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031545.1 LOB domain-containing protein 12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 341.3 bits (874), Expect = 4.8e-90
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDEKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS 167
           CPQIHSDEKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS
Sbjct: 121 CPQIHSDEKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS 166

[Close]

BLAST of Carg00202 vs. NCBI nr
Match: XP_023536420.1 (LOB domain-containing protein 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 340.1 bits (871), Expect = 1.1e-89
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDEKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS 167
           CPQIHSD+KPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS
Sbjct: 121 CPQIHSDDKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS 166

[Close]

BLAST of Carg00202 vs. NCBI nr
Match: XP_022977151.1 (LOB domain-containing protein 12-like [Cucurbita maxima])

HSP 1 Score: 339.0 bits (868), Expect = 2.4e-89
Identity = 164/166 (98.80%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQ+QVSQLQMQLAVAQAEILCIQMQQDHP+FPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQSQVSQLQMQLAVAQAEILCIQMQQDHPIFPN 120

Query: 121 CPQIHSDEKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS 167
           CPQIHSDEKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS
Sbjct: 121 CPQIHSDEKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS 166

[Close]

BLAST of Carg00202 vs. NCBI nr
Match: XP_038893139.1 (LOB domain-containing protein 12-like [Benincasa hispida])

HSP 1 Score: 334.0 bits (855), Expect = 7.6e-88
Identity = 161/166 (96.99%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCA+DCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCARDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDEKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS 167
           CPQIHSD+KPP+LLLPPPS PPSQCLNFASSPNVIYD IFGHDIVS
Sbjct: 121 CPQIHSDDKPPSLLLPPPSPPPSQCLNFASSPNVIYDTIFGHDIVS 166

[Close]

BLAST of Carg00202 vs. NCBI nr
Match: XP_004148190.1 (LOB domain-containing protein 12 [Cucumis sativus] >KGN50694.1 hypothetical protein Csa_005796 [Cucumis sativus])

HSP 1 Score: 327.4 bits (838), Expect = 7.1e-86
Identity = 161/167 (96.41%), Postives = 163/167 (97.60%), Query Frame = 0


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDEKPPTLLLPPPSSPPSQCLNF-ASSPNVIYDAIFGHDIVS 167
           CPQIHSD+KP +LLLPPPS PPSQCLNF ASSPNVIYD IFGHDIVS
Sbjct: 121 CPQIHSDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS 167

[Close]

BLAST of Carg00202 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 211.8 bits (538), Expect = 5.7e-54
Identity = 107/133 (80.45%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 3   GNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDA 62
           G+SPCASCKLLRRRCAKDCIFAPYFP DDPHKFAIVHKVFGASNVSKMLQELPV QR DA
Sbjct: 5   GSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADA 64

Query: 63  VMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCP 122
           V SLV+EA+ARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ +  +  +  
Sbjct: 65  VNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQ 124

Query: 123 QIHSDEKPPTLLL 136
            +  D+    LLL
Sbjct: 125 VLELDQDHKALLL 137

[Close]

BLAST of Carg00202 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.7e-43
Identity = 86/133 (64.66%), Postives = 107/133 (80.45%), Query Frame = 0


Query: 2   GGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGD 61
           G  SPCA+CKLLRRRCA+DC+F+PYFP+D+P KFA VH+VFGASNV+KMLQELP+ QRGD
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query: 62  AVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ--DHPVFP 121
           AV S+VYEA+ARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++++Q  + P   
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFPGHG 128

Query: 122 NCPQIHSDEKPPT 133
            CP   S    P+
Sbjct: 129 LCPDSPSSSGSPS 141

[Close]

BLAST of Carg00202 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 8.3e-37
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 5   SPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVM 64
           SPCA+CK+LRRRCA+ C+ APYFP  DP KF I H+VFGASN+ K LQELP  QR DAV 
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 65  SLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDH 116
           S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA AQ E++ +Q Q+ +
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSN 142

[Close]

BLAST of Carg00202 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 4.1e-36
Identity = 72/109 (66.06%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 5   SPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVM 64
           SPCA+CK+LRRRCA  C+ APYFP  DP KF I H+VFGASN+ K LQELP  QR DAV 
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 65  SLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ 114
           S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA  Q E++ +Q+Q+
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQR 162

[Close]

BLAST of Carg00202 vs. ExPASy Swiss-Prot
Match: Q9FML4 (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.1e-36
Identity = 72/103 (69.90%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 4   NSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAV 63
           NSPCA+CK LRR+C   CIFAPYFP ++PHKFA VHK+FGASNV+K+L EL   QR DAV
Sbjct: 9   NSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAV 68

Query: 64  MSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEI 107
            SL YEA ARVRDPVYGCVGAISYLQ QV +LQ +L  A A++
Sbjct: 69  NSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADL 111

[Close]

BLAST of Carg00202 vs. ExPASy TrEMBL
Match: A0A6J1GZ19 (LOB domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111458522 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.3e-90
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDEKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS 167
           CPQIHSDEKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS
Sbjct: 121 CPQIHSDEKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS 166

[Close]

BLAST of Carg00202 vs. ExPASy TrEMBL
Match: A0A6J1IJ16 (LOB domain-containing protein 12-like OS=Cucurbita maxima OX=3661 GN=LOC111477301 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.1e-89
Identity = 164/166 (98.80%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQ+QVSQLQMQLAVAQAEILCIQMQQDHP+FPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQSQVSQLQMQLAVAQAEILCIQMQQDHPIFPN 120

Query: 121 CPQIHSDEKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS 167
           CPQIHSDEKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS
Sbjct: 121 CPQIHSDEKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS 166

[Close]

BLAST of Carg00202 vs. ExPASy TrEMBL
Match: A0A0A0KP74 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G215140 PE=3 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 3.5e-86
Identity = 161/167 (96.41%), Postives = 163/167 (97.60%), Query Frame = 0


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDEKPPTLLLPPPSSPPSQCLNF-ASSPNVIYDAIFGHDIVS 167
           CPQIHSD+KP +LLLPPPS PPSQCLNF ASSPNVIYD IFGHDIVS
Sbjct: 121 CPQIHSDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS 167

[Close]

BLAST of Carg00202 vs. ExPASy TrEMBL
Match: A0A5A7T3C6 (LOB domain-containing protein 12-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold529G00110 PE=3 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 2.9e-85
Identity = 160/167 (95.81%), Postives = 162/167 (97.01%), Query Frame = 0


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDEKPPTLLLPPPSSPPSQCLNF-ASSPNVIYDAIFGHDIVS 167
           CPQIHSD+K  +LLLPPPS PPSQCLNF ASSPNVIYD IFGHDIVS
Sbjct: 121 CPQIHSDDKSSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS 167

[Close]

BLAST of Carg00202 vs. ExPASy TrEMBL
Match: A0A6J1FV10 (LOB domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111447102 PE=3 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.6e-83
Identity = 154/166 (92.77%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGG SPCASCKLLRRRCAK+CIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGGSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEA+ARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQ+EILC QMQQDH VFPN
Sbjct: 61  DAVMSLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQDHLVFPN 120

Query: 121 CPQIHSDEKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS 167
           CPQI+SDEKPP+LLLPPPS P SQC NFASSPN+IYDAIFGHDIVS
Sbjct: 121 CPQIYSDEKPPSLLLPPPSPPRSQCFNFASSPNIIYDAIFGHDIVS 166

[Close]

BLAST of Carg00202 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 211.8 bits (538), Expect = 4.1e-55
Identity = 107/133 (80.45%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 3   GNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDA 62
           G+SPCASCKLLRRRCAKDCIFAPYFP DDPHKFAIVHKVFGASNVSKMLQELPV QR DA
Sbjct: 5   GSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADA 64

Query: 63  VMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCP 122
           V SLV+EA+ARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ +  +  +  
Sbjct: 65  VNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQ 124

Query: 123 QIHSDEKPPTLLL 136
            +  D+    LLL
Sbjct: 125 VLELDQDHKALLL 137

[Close]

BLAST of Carg00202 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 176.4 bits (446), Expect = 1.9e-44
Identity = 86/133 (64.66%), Postives = 107/133 (80.45%), Query Frame = 0


Query: 2   GGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGD 61
           G  SPCA+CKLLRRRCA+DC+F+PYFP+D+P KFA VH+VFGASNV+KMLQELP+ QRGD
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query: 62  AVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ--DHPVFP 121
           AV S+VYEA+ARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++++Q  + P   
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFPGHG 128

Query: 122 NCPQIHSDEKPPT 133
            CP   S    P+
Sbjct: 129 LCPDSPSSSGSPS 141

[Close]

BLAST of Carg00202 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 )

HSP 1 Score: 154.8 bits (390), Expect = 5.9e-38
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 5   SPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVM 64
           SPCA+CK+LRRRCA+ C+ APYFP  DP KF I H+VFGASN+ K LQELP  QR DAV 
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 65  SLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDH 116
           S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA AQ E++ +Q Q+ +
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSN 142

[Close]

BLAST of Carg00202 vs. TAIR 10
Match: AT2G28500.1 (LOB domain-containing protein 11 )

HSP 1 Score: 152.5 bits (384), Expect = 2.9e-37
Identity = 72/109 (66.06%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 5   SPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVM 64
           SPCA+CK+LRRRCA  C+ APYFP  DP KF I H+VFGASN+ K LQELP  QR DAV 
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 65  SLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ 114
           S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA  Q E++ +Q+Q+
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQR 162

[Close]

BLAST of Carg00202 vs. TAIR 10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 152.5 bits (384), Expect = 2.9e-37
Identity = 72/103 (69.90%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 4   NSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAV 63
           NSPCA+CK LRR+C   CIFAPYFP ++PHKFA VHK+FGASNV+K+L EL   QR DAV
Sbjct: 9   NSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAV 68

Query: 64  MSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEI 107
            SL YEA ARVRDPVYGCVGAISYLQ QV +LQ +L  A A++
Sbjct: 69  NSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADL 111

The following BLAST results are available for this feature:

BLAST of Carg00202 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957028.1	4.8e-90	100.00	LOB domain-containing protein 12-like [Cucurbita moschata] >KAG6600910.1 LOB dom...	[more]
XP_023536420.1	1.1e-89	99.40	LOB domain-containing protein 12-like [Cucurbita pepo subsp. pepo]	[more]
XP_022977151.1	2.4e-89	98.80	LOB domain-containing protein 12-like [Cucurbita maxima]	[more]
XP_038893139.1	7.6e-88	96.99	LOB domain-containing protein 12-like [Benincasa hispida]	[more]
XP_004148190.1	7.1e-86	96.41	LOB domain-containing protein 12 [Cucumis sativus] >KGN50694.1 hypothetical prot...	[more]

BLAST of Carg00202 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LBW3	5.7e-54	80.45	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q9SHE9	2.7e-43	64.66	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q9LQR0	8.3e-37	65.77	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]
Q9SK08	4.1e-36	66.06	LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S...	[more]
Q9FML4	4.1e-36	69.90	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=...	[more]

BLAST of Carg00202 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GZ19	2.3e-90	100.00	LOB domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111458...	[more]
A0A6J1IJ16	1.1e-89	98.80	LOB domain-containing protein 12-like OS=Cucurbita maxima OX=3661 GN=LOC11147730...	[more]
A0A0A0KP74	3.5e-86	96.41	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G215140 PE=3 SV...	[more]
A0A5A7T3C6	2.9e-85	95.81	LOB domain-containing protein 12-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1FV10	1.6e-83	92.77	LOB domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111447...	[more]

BLAST of Carg00202 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30130.1	4.1e-55	80.45	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	1.9e-44	64.66	LOB domain-containing protein 4	[more]
AT1G07900.1	5.9e-38	65.77	LOB domain-containing protein 1	[more]
AT2G28500.1	2.9e-37	66.06	LOB domain-containing protein 11	[more]
AT5G63090.2	2.9e-37	69.90	Lateral organ boundaries (LOB) domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 85..105
None	No IPR available	PANTHER	PTHR31301:SF97	LOB DOMAIN-CONTAINING PROTEIN 12-LIKE	coord: 2..122
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 2..122
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 6..103 e-value: 3.7E-42 score: 142.9
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 5..106 score: 26.690853

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00202-RA	Carg00202-RA	mRNA