Carg00186 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00186
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Peptide chain release factor 1 like
Location	Carg_Chr04: 5807581 .. 5809125 (+)
RNA-Seq Expression	Carg00186
Synteny	Carg00186

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCCTCCTCAACCAAATCTTTTTCTGAATCCAAGAGAGAAGCAAGCCTACGATTTGCAGACGCAAAAAACTGGCGGTTTCCATCCGCGCAAATTCCCTTTGTTTGATGGCGAAATCGCTTCCGTCGGCAACTCACCTTCAGCAATTCGCCAAGATCGCTGTCTTCTCGAAGAAGCCTCAATCAGCCGCGCCCAAGCCCAAGTCTAGGATCCGAGTTTCGCCGTCCGAAACTCCGATTCCCGATACCGTCCGAGTCATCTCGGAGCCAAAGAAGAAGAACATGGAGGAGAAGAATCGGGTTCCGTTGGCTGATGTGGTGTCGGACTGCGTCAAGCGGTGGTTTCAGGACACGCTCAAGGAGGCCAGTGCTGGCGACCCGGCGATGCAGGTCTTGGTAGGGCAGATGTTTTGCTCCGGCTATGGAGTTCCTAAGGACACTAAGAAGGTTTGCGTTTCTTTTTGCTTTCTACATTTTGAGATTTCGTGTGGATTTCTTTCTTGCGGATGTATTTAGGGAATTAGAGAGGAAATTCTTGTGCAATTTGAGAGGGAAAAACCGAGTTTCGATTGTTCCTTGAAGGATCGCTAAATACGGTTAGCCTGCTGATTAAGAGAACGTAGGTAATTTTGGGATGAAGATTCAAGAATTCCATCCAATTGGTGTGTATTCTGAGCTGCTAACTAGTAATGTTATTATAGGCTGTGTTGTCTTTGGTGTGCATTGGTCTTTGCTCTCTAGTAAGTGGAATATTTGGCTCAATAGAAATAAGATGATTCTCGAAATTGAGATAAGCAAATTTTTGGTGGGGTTGGTGAGAGTCCCTTGCAAGTGTGAAATTTAGTTTGGTTTAATGTGTCTCGTGTTTGACTCTTAAAAGACATGTTCGGGAGTGATTTTGAAATGGTTTCAAGTAATTTTTTCTTGGTCAAAACCACTCGGATTCTCTCAAACATGTTTTTAAGCCTTCAAAATCAAGTTAATGTTTGATTTTAAGCTTTTAAACATGACAAACTTTCATGGGGAGAAAACAAATCCTGTCCTTTTGTTTAAATAAATGTCTGATTTCTGAACAAAGGGACTCGCTTGGATCAATCGGGCCTCGAAAGGTCAGGCACCAGTTGGTGAAGTAAGCGACAGACATCCAGGTATTCCACTCCTACAGAGTTTGTTTGGGAAGCAATCTTTCAGCGTTGCTTTCTAACTTTTTTGTCCTTTAGGTTACCTTGCAACTGATTCAGAACCAAGCAATAGGAGAGTGAAACAAGATGACATCAGATGATCCTTTCAGTAATCTTAGTAAGTTTTGTTCTGAATTTGAACCTTTCTGTAGTAGAATTCACTCTTCATATGGTTTTATCTTAATTATGTGAAATTCAGCAGCATAGATGTGGTAATAAGAAAGATAAGGTAAAACAAGTCATCTTCCATGTTAATGTGTAAAAGTGAAATTTATTTTGTGTTTCTCACCCCTTTTGTTTTATTTTATGAGATCCCACATCGACTGGGGAGGAAAATGAAATATTCTTTATAAGGGTGTGGAAACC

mRNA sequence

CTCCCTCCTCAACCAAATCTTTTTCTGAATCCAAGAGAGAAGCAAGCCTACGATTTGCAGACGCAAAAAACTGGCGGTTTCCATCCGCGCAAATTCCCTTTGTTTGATGGCGAAATCGCTTCCGTCGGCAACTCACCTTCAGCAATTCGCCAAGATCGCTGTCTTCTCGAAGAAGCCTCAATCAGCCGCGCCCAAGCCCAAGTCTAGGATCCGAGTTTCGCCGTCCGAAACTCCGATTCCCGATACCGTCCGAGTCATCTCGGAGCCAAAGAAGAAGAACATGGAGGAGAAGAATCGGGTTCCGTTGGCTGATGTGGTGTCGGACTGCGTCAAGCGGTGGTTTCAGGACACGCTCAAGGAGGCCAGTGCTGGCGACCCGGCGATGCAGGTCTTGGTAGGGCAGATGTTTTGCTCCGGCTATGGAGTTCCTAAGGACACTAAGAAGGGACTCGCTTGGATCAATCGGGCCTCGAAAGGTCAGGCACCAGTTGGTGAAGTAAGCGACAGACATCCAGGTTACCTTGCAACTGATTCAGAACCAAGCAATAGGAGAGTGAAACAAGATGACATCAGATGATCCTTTCAGTAATCTTAGTAAGTTTTGTTCTGAATTTGAACCTTTCTGTAGTAGAATTCACTCTTCATATGGTTTTATCTTAATTATGTGAAATTCAGCAGCATAGATGTGGTAATAAGAAAGATAAGGTAAAACAAGTCATCTTCCATGTTAATGTGTAAAAGTGAAATTTATTTTGTGTTTCTCACCCCTTTTGTTTTATTTTATGAGATCCCACATCGACTGGGGAGGAAAATGAAATATTCTTTATAAGGGTGTGGAAACC

Coding sequence (CDS)

ATGGCGAAATCGCTTCCGTCGGCAACTCACCTTCAGCAATTCGCCAAGATCGCTGTCTTCTCGAAGAAGCCTCAATCAGCCGCGCCCAAGCCCAAGTCTAGGATCCGAGTTTCGCCGTCCGAAACTCCGATTCCCGATACCGTCCGAGTCATCTCGGAGCCAAAGAAGAAGAACATGGAGGAGAAGAATCGGGTTCCGTTGGCTGATGTGGTGTCGGACTGCGTCAAGCGGTGGTTTCAGGACACGCTCAAGGAGGCCAGTGCTGGCGACCCGGCGATGCAGGTCTTGGTAGGGCAGATGTTTTGCTCCGGCTATGGAGTTCCTAAGGACACTAAGAAGGGACTCGCTTGGATCAATCGGGCCTCGAAAGGTCAGGCACCAGTTGGTGAAGTAAGCGACAGACATCCAGGTTACCTTGCAACTGATTCAGAACCAAGCAATAGGAGAGTGAAACAAGATGACATCAGATGA

Protein sequence

MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR

Homology

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BLAST of Carg00186 vs. NCBI nr
Match: XP_022957582.1 (uncharacterized protein LOC111458931 [Cucurbita moschata] >KAG7031531.1 hypothetical protein SDJN02_05571 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 311.2 bits (796), Expect = 5.0e-81
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNME 60
           MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNME
Sbjct: 1   MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNME 60

Query: 61  EKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINR 120
           EKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINR
Sbjct: 61  EKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINR 120

Query: 121 ASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR 157
           ASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
Sbjct: 121 ASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR 156

[Close]

BLAST of Carg00186 vs. NCBI nr
Match: XP_022991950.1 (uncharacterized protein LOC111488439 [Cucurbita maxima])

HSP 1 Score: 308.1 bits (788), Expect = 4.2e-80
Identity = 154/156 (98.72%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNME 60
           MAKSLPSA+HLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNME
Sbjct: 1   MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNME 60

Query: 61  EKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINR 120
           E+NRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINR
Sbjct: 61  EQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINR 120

Query: 121 ASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR 157
           ASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
Sbjct: 121 ASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR 156

[Close]

BLAST of Carg00186 vs. NCBI nr
Match: KAG6600897.1 (hypothetical protein SDJN03_06130, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 308.1 bits (788), Expect = 4.2e-80
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNME 60
           MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNME
Sbjct: 1   MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNME 60

Query: 61  EKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINR 120
           EKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINR
Sbjct: 61  EKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINR 120

Query: 121 ASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR 157
           ASKGQA VGEVSDRHPGYLATDSEPSNRRVKQDDIR
Sbjct: 121 ASKGQASVGEVSDRHPGYLATDSEPSNRRVKQDDIR 156

[Close]

BLAST of Carg00186 vs. NCBI nr
Match: XP_023536449.1 (uncharacterized protein LOC111797620 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 307.0 bits (785), Expect = 9.4e-80
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNME 60
           MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVS SETPIPDTVRVISEPKKKNME
Sbjct: 1   MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSSSETPIPDTVRVISEPKKKNME 60

Query: 61  EKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINR 120
           +KNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINR
Sbjct: 61  DKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINR 120

Query: 121 ASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR 157
           ASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
Sbjct: 121 ASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR 156

[Close]

BLAST of Carg00186 vs. NCBI nr
Match: XP_023552657.1 (uncharacterized protein LOC111810237 [Cucurbita pepo subsp. pepo] >XP_023552666.1 uncharacterized protein LOC111810237 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.0 bits (611), Expect = 1.4e-59
Identity = 124/158 (78.48%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 1   MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEP--KKKN 60
           MAKSLP A+ LQQFAK+ V SKKPQS   + K +IRVSP ETPI D+VRVISEP   KKN
Sbjct: 1   MAKSLPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKN 60

Query: 61  MEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWI 120
           ME KNR+PLADVVSDC KRWFQDTLKEA+AGD AMQVLVGQMFCSGYGVPKDT+KGLAWI
Sbjct: 61  MEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVGQMFCSGYGVPKDTRKGLAWI 120

Query: 121 NRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR 157
           NRASK QA V + SDRHP YLATDSE S+RRVK+DDIR
Sbjct: 121 NRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIR 158

[Close]

BLAST of Carg00186 vs. ExPASy TrEMBL
Match: A0A6J1GZI5 (uncharacterized protein LOC111458931 OS=Cucurbita moschata OX=3662 GN=LOC111458931 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.4e-81
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNME 60
           MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNME
Sbjct: 1   MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNME 60

Query: 61  EKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINR 120
           EKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINR
Sbjct: 61  EKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINR 120

Query: 121 ASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR 157
           ASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
Sbjct: 121 ASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR 156

[Close]

BLAST of Carg00186 vs. ExPASy TrEMBL
Match: A0A6J1JUC7 (uncharacterized protein LOC111488439 OS=Cucurbita maxima OX=3661 GN=LOC111488439 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.0e-80
Identity = 154/156 (98.72%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNME 60
           MAKSLPSA+HLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNME
Sbjct: 1   MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNME 60

Query: 61  EKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINR 120
           E+NRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINR
Sbjct: 61  EQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINR 120

Query: 121 ASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR 157
           ASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
Sbjct: 121 ASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR 156

[Close]

BLAST of Carg00186 vs. ExPASy TrEMBL
Match: A0A6J1FNN7 (uncharacterized protein LOC111447103 OS=Cucurbita moschata OX=3662 GN=LOC111447103 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 2.0e-59
Identity = 123/158 (77.85%), Postives = 134/158 (84.81%), Query Frame = 0


Query: 1   MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEP--KKKN 60
           MAKS P A+ LQQFAK+ V SKKPQS   + K +IRVSP ETPI D+VRVISEP   KKN
Sbjct: 1   MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKN 60

Query: 61  MEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWI 120
           ME KNR+PLADVVSDC KRWFQDTLKEA+AGD AMQVLVGQMFCSGYGVPKDT+KGLAWI
Sbjct: 61  MEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVGQMFCSGYGVPKDTRKGLAWI 120

Query: 121 NRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR 157
           NRASK QA V + SDRHP YLATDSE S+RRVK+DDIR
Sbjct: 121 NRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIR 158

[Close]

BLAST of Carg00186 vs. ExPASy TrEMBL
Match: A0A6J1K2L5 (uncharacterized protein LOC111491826 OS=Cucurbita maxima OX=3661 GN=LOC111491826 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.7e-58
Identity = 121/153 (79.08%), Postives = 132/153 (86.27%), Query Frame = 0


Query: 1   MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEP--KKKN 60
           MAKSLP A+ LQQFAK+ V SKKPQS  P+ K +IRVSP ETPI D+VRVISEP   KKN
Sbjct: 1   MAKSLPLASRLQQFAKVVVSSKKPQSPTPRQKPKIRVSPPETPISDSVRVISEPAQPKKN 60

Query: 61  MEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWI 120
           ME KNR+PLADVVSDC KRWFQDTLKEA+AGD AMQVLVGQMFCSGYGVPKDT+KGLAWI
Sbjct: 61  MEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVGQMFCSGYGVPKDTRKGLAWI 120

Query: 121 NRASKGQAPVGEVSDRHPGYLATDSEPSNRRVK 152
           +RASK QA V + SDRHPGYLATDSE S+RRVK
Sbjct: 121 SRASKYQASVRKASDRHPGYLATDSESSDRRVK 153

[Close]

BLAST of Carg00186 vs. ExPASy TrEMBL
Match: A0A0A0KM25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G218760 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.9e-54
Identity = 120/159 (75.47%), Postives = 129/159 (81.13%), Query Frame = 0


Query: 1   MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNM- 60
           MAKSLPS    QQFAK+   SK PQS  PK KSRIR SPSETPI  +VRVISEP K    
Sbjct: 1   MAKSLPSPARFQQFAKLVFSSKNPQS-QPK-KSRIRASPSETPISGSVRVISEPNKNKYM 60

Query: 61  --EEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAW 120
             EEKNR PLADVVSDCVKRWFQDTLKEA AGD +MQVLVGQMFCSGYGVPK+TKKGLAW
Sbjct: 61  EEEEKNRTPLADVVSDCVKRWFQDTLKEAKAGDTSMQVLVGQMFCSGYGVPKNTKKGLAW 120

Query: 121 INRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR 157
           I RASK QA V + SDRHPGYLATDSE S+RRVK+D++R
Sbjct: 121 IYRASKYQASVWKASDRHPGYLATDSESSDRRVKRDNVR 157

[Close]

BLAST of Carg00186 vs. TAIR 10
Match: AT5G05360.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 84 Blast hits to 84 proteins in 24 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 128.3 bits (321), Expect = 5.6e-30
Identity = 56/87 (64.37%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 63  NRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINRAS 122
           NRVPLA VV DCV+RWFQDTLKEA +GD  MQVLVGQM+CSGYG+PKD  KG AWIN+AS
Sbjct: 76  NRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGRAWINKAS 135

Query: 123 KGQAPVGEVSDRHPGYLATDSEPSNRR 150
           + ++   +VSD+ PGY A+DS+ ++++
Sbjct: 136 RTRSSAWQVSDKPPGYNASDSDSNDKK 162

[Close]

BLAST of Carg00186 vs. TAIR 10
Match: AT5G05360.2 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 118.2 bits (295), Expect = 5.7e-27
Identity = 52/75 (69.33%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 63  NRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINRAS 122
           NRVPLA VV DCV+RWFQDTLKEA +GD  MQVLVGQM+CSGYG+PKD  KG AWIN+AS
Sbjct: 76  NRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGRAWINKAS 135

Query: 123 KGQAPVGEVSDRHPG 138
           + ++   +VSD+ PG
Sbjct: 136 RTRSSAWQVSDKPPG 150

[Close]

BLAST of Carg00186 vs. TAIR 10
Match: AT2G38450.1 (CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05360.1); Has 88 Blast hits to 88 proteins in 25 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 109.0 bits (271), Expect = 3.5e-24
Identity = 67/147 (45.58%), Postives = 87/147 (59.18%), Query Frame = 0


Query: 1   MAKSLPSATHLQ-QFAKIAVF--SKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKK 60
           M KS+P  T L+   A +A F  S KP        S  + S S T   +T R        
Sbjct: 1   MGKSIPVKTGLRGASAAVAGFIKSSKPIRPISSMDSSDKDSSSTTTTSETTR-------- 60

Query: 61  NMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAW 120
                  VPL+ VVSDC KRWF+DTL+EA AG+  MQVL+GQM+ SGYGVPKD +KG  W
Sbjct: 61  -----RFVPLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPKDARKGRLW 120

Query: 121 INRASKGQAPVGEVSDRHPGYLATDSE 145
           I +AS+ ++ V +V D+ PGY A+DS+
Sbjct: 121 ITKASRVRSSVWKVIDKRPGYNASDSD 134

The following BLAST results are available for this feature:

BLAST of Carg00186 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957582.1	5.0e-81	100.00	uncharacterized protein LOC111458931 [Cucurbita moschata] >KAG7031531.1 hypothet...	[more]
XP_022991950.1	4.2e-80	98.72	uncharacterized protein LOC111488439 [Cucurbita maxima]	[more]
KAG6600897.1	4.2e-80	99.36	hypothetical protein SDJN03_06130, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023536449.1	9.4e-80	98.72	uncharacterized protein LOC111797620 [Cucurbita pepo subsp. pepo]	[more]
XP_023552657.1	1.4e-59	78.48	uncharacterized protein LOC111810237 [Cucurbita pepo subsp. pepo] >XP_023552666....	[more]

BLAST of Carg00186 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg00186 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GZI5	2.4e-81	100.00	uncharacterized protein LOC111458931 OS=Cucurbita moschata OX=3662 GN=LOC1114589...	[more]
A0A6J1JUC7	2.0e-80	98.72	uncharacterized protein LOC111488439 OS=Cucurbita maxima OX=3661 GN=LOC111488439...	[more]
A0A6J1FNN7	2.0e-59	77.85	uncharacterized protein LOC111447103 OS=Cucurbita moschata OX=3662 GN=LOC1114471...	[more]
A0A6J1K2L5	1.7e-58	79.08	uncharacterized protein LOC111491826 OS=Cucurbita maxima OX=3661 GN=LOC111491826...	[more]
A0A0A0KM25	1.9e-54	75.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G218760 PE=4 SV=1	[more]

BLAST of Carg00186 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05360.1	5.6e-30	64.37	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas...	[more]
AT5G05360.2	5.7e-27	69.33	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas...	[more]
AT2G38450.1	3.5e-24	45.58	CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597); BEST Arabidopsis tha...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 51..131 e-value: 2.5E-6 score: 29.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..156
None	No IPR available	PANTHER	PTHR36792:SF6	TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..148
None	No IPR available	PANTHER	PTHR36792	EXPRESSED PROTEIN	coord: 1..148
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 86..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00186-RA	Carg00186-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding