Carg00170 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00170
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein S26
Location	Carg_Chr04: 5720479 .. 5722625 (+)
RNA-Seq Expression	Carg00170
Synteny	Carg00170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCAGCATTTTGCCCACAAAAAAACCCTAATCGGTGCATTTTCTCTCTCGCTGCTTCGTCTGAAAGCTCTGCAGCTTTGAAACAATGGTAAGATCATTAGCCCGTCACCTTTTCCTCTGAATCTTCTTGTTTTAAATCGTTCTCCGTTCATCTTTTTCTGCTTTTGGTTCTGCCAGACTTTCAAGCGCAGGAACGGTGGACGTAACAAGCACGGCCGTGGACACGTTAAGTTCATCAGGTGCTCCAACTGCGGAAAATGCTGCCCCAAGGTTATTGTTTTACTCTTCTTTCTGCGTGATTTTTGCGTGCATTTTTAAGTAGTTTAATGGCGGCGGTCAAATCTATACGTTCTGCTAATGTTTCCTTTGCGGAATTGTGTCATTTTGTTTTTAATTTTTGTTTTGATGCTTTATTGCTAGTATTACTGGAGTATTTGTGATTGATTGATCTAGAAATAAGTATCCGCCAAGTTCTGGGGATATGTTAGTATCTATAGGAGTTTGTATTTGTATTGTTGTTAAAAGATTGTTTAGGTGATATTTTATAGGTAAAAGAGCTAGACTTGATGTTTAGCTACATTTTAAATTTCTTTTCGATGAAACACATTGATAGCATTTTTTTTTTTTCAGAACATTTTATAGGATAAGTTTTTTGGTTTTAAAAATGGAATTCCCGTAAGCATTCCAAAACTCGATACTTTATTAGGCTTGAGGCTTTCCTGGAGACAAGATTCTAACTTTTAGCCTCTAGACTTATGTCTTCTTTGGACCGTAAGGGTTCCTAATCACACTATAGTTTTGGACGGAGTGAATTTGGAGTGTCCATTGACTATTGAGCAAGAGAAGTTCAATTTTATTTTAGCCAAGAGCTGAAGTTGATTAAATCTAACTAAATGAGTTTTGATTGATGAGGATAGGACAAGGCTATTAAGAGGTTTCTAGTGAGGAATATTGTGGAGCAAGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTCTATGACCGTAAGTTGTTCTGTCCTCTCCTGCTAGCTTTTGGTTGCTTTATTTCATTTAACAACAATCTTTTTGTTCAATGTCTGATATAGATCTTTGTTCTCGGTGCAGAATACACTCTTCCTAAGCTTTATGCTAAGATGCAGTACTGTGTTTCCTGTGCCATTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGTTTCATCAGACGCAGGGTTAGTCTTTGCATAAAATATTTTAAACTTTGATTCATAACAGAATAATCATATGAACAATGAATTTGATGAAGTGTATCTACTTTGATTCATTTGGATTATGTATATTTTAATGACGATACCAACTATTTGGTAATGCTATTGATGCTCGTGTCGAAGATCAACTACATATCTTATACTTGTTAGTGAGTACCACTCATGATTGTTTGTCGTTCCATTTAGAGGCACTTAAGCATGTTTACTTCCTAACAACAGATAATTTTTTTATTCGGCAATACTGATATTCGGAGTAGCCTCTGATGGTTTGTTACCTTTTCCCGTTTCTGTGTTTGTTTCAGGATGATCAGCCAAAGCCTGGCCAGCCAGGTCAAGCACCTCGTCCTGCTGGAGCTGGAATTCCTGCTCGTGTATAGAAGAAACCTTTATATGGCTTCTACGAGCAATACGTAGTAATCTTTACAGTCGCTCTATTATAGTTTGGTCGTTTTCTTTGGGGATGGAAGTGAATTTTAGAATGAATATGGAAACTTACCCGAGAATTTTGCAGATAGGAGCGTGGGAGGTAAAGAACAGGTTTATTGAGTTAGTTAATGGATTTTTCTACAGTTTCTTGTTTGGATACTCCAATTTGTTTCTTAAATCATCATTTTACTGTCCGTCTTTCCTGCTTTAATCATATCATATGGTATAGGGAAGGGGCAACGAGAAAGCAGCATGAAAATTAGATTAAGATTGTTAATTCCATACCCCTTTATGACATTTAATTTCCATCCCAACAGCAGGTGTATGTTTGTGTCTGTGATATCTTTCCTTTAGCCTTTGAAATATGTAGGTTGCCGTTTCGTGTAGGGGAGAAAATTACCAGGACTATTAAATATCTTGAGTTTATAAAAATGTTGAAAATATTGA

mRNA sequence

AATCAGCATTTTGCCCACAAAAAAACCCTAATCGGTGCATTTTCTCTCTCGCTGCTTCGTCTGAAAGCTCTGCAGCTTTGAAACAATGACTTTCAAGCGCAGGAACGGTGGACGTAACAAGCACGGCCGTGGACACGTTAAGTTCATCAGGTGCTCCAACTGCGGAAAATGCTGCCCCAAGGACAAGGCTATTAAGAGGTTTCTAGTGAGGAATATTGTGGAGCAAGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTCTATGACCAATACACTCTTCCTAAGCTTTATGCTAAGATGCAGTACTGTGTTTCCTGTGCCATTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGTTTCATCAGACGCAGGGATGATCAGCCAAAGCCTGGCCAGCCAGGTCAAGCACCTCGTCCTGCTGGAGCTGGAATTCCTGCTCGTGTATAGAAGAAACCTTTATATGGCTTCTACGAGCAATACGTAGTAATCTTTACAGTCGCTCTATTATAGTTTGGTCGTTTTCTTTGGGGATGGAAGTGAATTTTAGAATGAATATGGAAACTTACCCGAGAATTTTGCAGATAGGAGCGTGGGAGGTAAAGAACAGGTTTATTGAGTTAGTTAATGGATTTTTCTACAGTTTCTTGTTTGGATACTCCAATTTGTTTCTTAAATCATCATTTTACTGTCCGTCTTTCCTGCTTTAATCATATCATATGGTATAGGGAAGGGGCAACGAGAAAGCAGCATGAAAATTAGATTAAGATTGTTAATTCCATACCCCTTTATGACATTTAATTTCCATCCCAACAGCAGGTGTATGTTTGTGTCTGTGATATCTTTCCTTTAGCCTTTGAAATATGTAGGTTGCCGTTTCGTGTAGGGGAGAAAATTACCAGGACTATTAAATATCTTGAGTTTATAAAAATGTTGAAAATATTGA

Coding sequence (CDS)

ATGACTTTCAAGCGCAGGAACGGTGGACGTAACAAGCACGGCCGTGGACACGTTAAGTTCATCAGGTGCTCCAACTGCGGAAAATGCTGCCCCAAGGACAAGGCTATTAAGAGGTTTCTAGTGAGGAATATTGTGGAGCAAGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTCTATGACCAATACACTCTTCCTAAGCTTTATGCTAAGATGCAGTACTGTGTTTCCTGTGCCATTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGTTTCATCAGACGCAGGGATGATCAGCCAAAGCCTGGCCAGCCAGGTCAAGCACCTCGTCCTGCTGGAGCTGGAATTCCTGCTCGTGTATAG

Protein sequence

MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRPAGAGIPARV

Homology

[Close]

BLAST of Carg00170 vs. NCBI nr
Match: XP_022943123.1 (40S ribosomal protein S26-1-like [Cucurbita moschata] >XP_022987349.1 40S ribosomal protein S26-1-like [Cucurbita maxima] >KAG6600881.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031515.1 40S ribosomal protein S26-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 264.6 bits (675), Expect = 4.4e-67
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120

Query: 121 AGAGIPARV 130
           AGAGIPARV
Sbjct: 121 AGAGIPARV 129

[Close]

BLAST of Carg00170 vs. NCBI nr
Match: XP_023529394.1 (40S ribosomal protein S26-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264.2 bits (674), Expect = 5.8e-67
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120

Query: 121 AGAGIPARV 130
           AGAG+PARV
Sbjct: 121 AGAGVPARV 129

[Close]

BLAST of Carg00170 vs. NCBI nr
Match: XP_004146441.1 (40S ribosomal protein S26-1 [Cucumis sativus] >XP_008456941.1 PREDICTED: 40S ribosomal protein S26-1 [Cucumis melo] >XP_038891817.1 40S ribosomal protein S26-1-like [Benincasa hispida] >KAA0067538.1 hypothetical protein E6C27_scaffold50G00610 [Cucumis melo var. makuwa] >KGN50730.1 hypothetical protein Csa_005888 [Cucumis sativus] >TYK22411.1 hypothetical protein E5676_scaffold530G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 255.8 bits (652), Expect = 2.0e-64
Identity = 125/129 (96.90%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR+DQ KPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120

Query: 121 AGAGIPARV 130
            GAG PARV
Sbjct: 121 VGAGNPARV 129

[Close]

BLAST of Carg00170 vs. NCBI nr
Match: XP_022941874.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_023532350.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 254.2 bits (648), Expect = 6.0e-64
Identity = 126/132 (95.45%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPK---PGQPGQA 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF+RRRDDQPK   PGQPGQA
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120

Query: 121 PRPAGAGIPARV 130
           PRP GAG PARV
Sbjct: 121 PRPVGAGNPARV 132

[Close]

BLAST of Carg00170 vs. NCBI nr
Match: GAV62493.1 (LOW QUALITY PROTEIN: Sod_Fe_N domain-containing protein/Ribosomal_S26e domain-containing protein/Sod_Fe_C domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 254.2 bits (648), Expect = 6.0e-64
Identity = 124/128 (96.88%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 240 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 299

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNR+PPQRFIRRRDD PKPGQPGQAPRP
Sbjct: 300 QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDIPKPGQPGQAPRP 359

Query: 121 AGAGIPAR 129
           AGAG P R
Sbjct: 360 AGAGNPVR 367

[Close]

BLAST of Carg00170 vs. ExPASy Swiss-Prot
Match: P49206 (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2)

HSP 1 Score: 217.2 bits (552), Expect = 1.1e-55
Identity = 107/127 (84.25%), Postives = 113/127 (88.98%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPRP
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPRP 120

Query: 121 AGAGIPA 128
           AG G  A
Sbjct: 121 AGPGAAA 127

[Close]

BLAST of Carg00170 vs. ExPASy Swiss-Prot
Match: Q8LPJ7 (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2)

HSP 1 Score: 217.2 bits (552), Expect = 1.1e-55
Identity = 107/127 (84.25%), Postives = 113/127 (88.98%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPRP
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPRP 120

Query: 121 AGAGIPA 128
           AG G  A
Sbjct: 121 AGPGAAA 127

[Close]

BLAST of Carg00170 vs. ExPASy Swiss-Prot
Match: Q9LYK9 (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.4e-55
Identity = 108/127 (85.04%), Postives = 114/127 (89.76%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKP QPGQAPRP
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPRP 120

Query: 121 AGAGIPA 128
           AG G PA
Sbjct: 121 AG-GAPA 126

[Close]

BLAST of Carg00170 vs. ExPASy Swiss-Prot
Match: P49216 (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2)

HSP 1 Score: 197.6 bits (501), Expect = 8.7e-50
Identity = 98/128 (76.56%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQP-GQAPR 120
            Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR+R+PP+RF RRR+D+P+  +P G AP 
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERF-RRREDRPQGPRPGGGAPA 120

Query: 121 PAGAGIPA 128
           P GA  PA
Sbjct: 121 PGGAAAPA 127

[Close]

BLAST of Carg00170 vs. ExPASy Swiss-Prot
Match: O45499 (40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-37
Identity = 81/120 (67.50%), Postives = 93/120 (77.50%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
           QY LPKLY K+ YC++CAIHS VVR RSR  RR+R PP RF  +R    +PG PG  PRP
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRF-GQRAAAARPGAPG--PRP 117

[Close]

BLAST of Carg00170 vs. ExPASy TrEMBL
Match: A0A6J1JIN0 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111484926 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.1e-67
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120

Query: 121 AGAGIPARV 130
           AGAGIPARV
Sbjct: 121 AGAGIPARV 129

[Close]

BLAST of Carg00170 vs. ExPASy TrEMBL
Match: A0A6J1FWD9 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111447947 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.1e-67
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120

Query: 121 AGAGIPARV 130
           AGAGIPARV
Sbjct: 121 AGAGIPARV 129

[Close]

BLAST of Carg00170 vs. ExPASy TrEMBL
Match: A0A5A7VIJ0 (40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold530G00060 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 9.9e-65
Identity = 125/129 (96.90%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR+DQ KPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120

Query: 121 AGAGIPARV 130
            GAG PARV
Sbjct: 121 VGAGNPARV 129

[Close]

BLAST of Carg00170 vs. ExPASy TrEMBL
Match: A0A0A0KM45 (40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_5G220930 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 9.9e-65
Identity = 125/129 (96.90%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR+DQ KPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120

Query: 121 AGAGIPARV 130
            GAG PARV
Sbjct: 121 VGAGNPARV 129

[Close]

BLAST of Carg00170 vs. ExPASy TrEMBL
Match: A0A1S3C5M1 (40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496738 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 9.9e-65
Identity = 125/129 (96.90%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR+DQ KPGQPGQAPRP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRP 120

Query: 121 AGAGIPARV 130
            GAG PARV
Sbjct: 121 VGAGNPARV 129

[Close]

BLAST of Carg00170 vs. TAIR 10
Match: AT2G40510.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 217.2 bits (552), Expect = 7.5e-57
Identity = 107/127 (84.25%), Postives = 113/127 (88.98%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPRP
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPRP 120

Query: 121 AGAGIPA 128
           AG G  A
Sbjct: 121 AGPGAAA 127

[Close]

BLAST of Carg00170 vs. TAIR 10
Match: AT2G40590.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 217.2 bits (552), Expect = 7.5e-57
Identity = 107/127 (84.25%), Postives = 113/127 (88.98%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPRP
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPRP 120

Query: 121 AGAGIPA 128
           AG G  A
Sbjct: 121 AGPGAAA 127

[Close]

BLAST of Carg00170 vs. TAIR 10
Match: AT3G56340.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 216.1 bits (549), Expect = 1.7e-56
Identity = 108/127 (85.04%), Postives = 114/127 (89.76%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRP 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKP QPGQAPRP
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPRP 120

Query: 121 AGAGIPA 128
           AG G PA
Sbjct: 121 AG-GAPA 126

The following BLAST results are available for this feature:

BLAST of Carg00170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943123.1	4.4e-67	100.00	40S ribosomal protein S26-1-like [Cucurbita moschata] >XP_022987349.1 40S riboso...	[more]
XP_023529394.1	5.8e-67	99.22	40S ribosomal protein S26-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_004146441.1	2.0e-64	96.90	40S ribosomal protein S26-1 [Cucumis sativus] >XP_008456941.1 PREDICTED: 40S rib...	[more]
XP_022941874.1	6.0e-64	95.45	40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_023532350.1 40S riboso...	[more]
GAV62493.1	6.0e-64	96.88	LOW QUALITY PROTEIN: Sod_Fe_N domain-containing protein/Ribosomal_S26e domain-co...	[more]

BLAST of Carg00170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49206	1.1e-55	84.25	40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2	[more]
Q8LPJ7	1.1e-55	84.25	40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2	[more]
Q9LYK9	2.4e-55	85.04	40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1	[more]
P49216	8.7e-50	76.56	40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2...	[more]
O45499	1.3e-37	67.50	40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1	[more]

BLAST of Carg00170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JIN0	2.1e-67	100.00	40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111484926 PE=3 SV=1	[more]
A0A6J1FWD9	2.1e-67	100.00	40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111447947 PE=3 SV=...	[more]
A0A5A7VIJ0	9.9e-65	96.90	40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KM45	9.9e-65	96.90	40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_5G220930 PE=3 SV=1	[more]
A0A1S3C5M1	9.9e-65	96.90	40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496738 PE=3 SV=1	[more]

BLAST of Carg00170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40510.1	7.5e-57	84.25	Ribosomal protein S26e family protein	[more]
AT2G40590.1	7.5e-57	84.25	Ribosomal protein S26e family protein	[more]
AT3G56340.1	1.7e-56	85.04	Ribosomal protein S26e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000892	Ribosomal protein S26e	PFAM	PF01283	Ribosomal_S26e	coord: 1..106 e-value: 7.2E-55 score: 184.0
IPR000892	Ribosomal protein S26e	PANTHER	PTHR12538	40S RIBOSOMAL PROTEIN S26	coord: 1..128
IPR000892	Ribosomal protein S26e	PROSITE	PS00733	RIBOSOMAL_S26E	coord: 73..80
IPR038551	Ribosomal protein S26e superfamily	GENE3D	3.30.1740.20	Ribosomal protein S26e	coord: 1..114 e-value: 8.9E-59 score: 198.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..129
None	No IPR available	PANTHER	PTHR12538:SF16	40S RIBOSOMAL PROTEIN S26	coord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00170-RA	Carg00170-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019430	removal of superoxide radicals
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004784	superoxide dismutase activity