Carg00115 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00115
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	myb-related transcription factor, partner of profilin-like
Location	Carg_Chr04: 5417223 .. 5417597 (+)
RNA-Seq Expression	Carg00115
Synteny	Carg00115

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCATCCAAACGAGGCCTCGTTATGCTCTGTTCATCTTCAGCTTCTTATTCGTTCTTTCAATCAATGTAGTACTCACCCATGGCTTCCTCTCTTCCAAGAAGCTTGATGAATCCACCGGCGGGGACGATCCCAGAGTCAAGTGTACACCCTGCACCCATAATCCGCCACCCCCACCGCCCCCACCGAAGAAACCGTCACCGGCCTACTGCCCTCCGCCACCACCTCCTCCGTCGTCTTTCATTTACATACTCGGCCCCCCCGGAAACTTGTATCCCATTGACCGGGATTTCGCCGGTGCTGATCGAAGGAGGGTAGTCGTGGAGTTGTCGGCGGTTGCTCTCTTTGGATTGATTGGTTTTCTTGGAGTTTGA

mRNA sequence

ATGTGCATCCAAACGAGGCCTCGTTATGCTCTGTTCATCTTCAGCTTCTTATTCGTTCTTTCAATCAATGTAGTACTCACCCATGGCTTCCTCTCTTCCAAGAAGCTTGATGAATCCACCGGCGGGGACGATCCCAGAGTCAAGTGTACACCCTGCACCCATAATCCGCCACCCCCACCGCCCCCACCGAAGAAACCGTCACCGGCCTACTGCCCTCCGCCACCACCTCCTCCGTCGTCTTTCATTTACATACTCGGCCCCCCCGGAAACTTGTATCCCATTGACCGGGATTTCGCCGGTGCTGATCGAAGGAGGGTAGTCGTGGAGTTGTCGGCGGTTGCTCTCTTTGGATTGATTGGTTTTCTTGGAGTTTGA

Coding sequence (CDS)

ATGTGCATCCAAACGAGGCCTCGTTATGCTCTGTTCATCTTCAGCTTCTTATTCGTTCTTTCAATCAATGTAGTACTCACCCATGGCTTCCTCTCTTCCAAGAAGCTTGATGAATCCACCGGCGGGGACGATCCCAGAGTCAAGTGTACACCCTGCACCCATAATCCGCCACCCCCACCGCCCCCACCGAAGAAACCGTCACCGGCCTACTGCCCTCCGCCACCACCTCCTCCGTCGTCTTTCATTTACATACTCGGCCCCCCCGGAAACTTGTATCCCATTGACCGGGATTTCGCCGGTGCTGATCGAAGGAGGGTAGTCGTGGAGTTGTCGGCGGTTGCTCTCTTTGGATTGATTGGTTTTCTTGGAGTTTGA

Protein sequence

MCIQTRPRYALFIFSFLFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPPPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIGFLGV

Homology

[Close]

BLAST of Carg00115 vs. NCBI nr
Match: KAG7031461.1 (hypothetical protein SDJN02_05501, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.4 bits (620), Expect = 1.0e-60
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFLFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPPP 60
           MCIQTRPRYALFIFSFLFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPPP
Sbjct: 1   MCIQTRPRYALFIFSFLFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPPP 60

Query: 61  PPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIG 120
           PPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIG
Sbjct: 61  PPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIG 120

Query: 121 FLGV 125
           FLGV
Sbjct: 121 FLGV 124

[Close]

BLAST of Carg00115 vs. NCBI nr
Match: KAG6600825.1 (hypothetical protein SDJN03_06058, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 241.9 bits (616), Expect = 2.9e-60
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFLFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPPP 60
           MCIQTRPRYALFIFSF FVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPPP
Sbjct: 1   MCIQTRPRYALFIFSFFFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPPP 60

Query: 61  PPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIG 120
           PPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIG
Sbjct: 61  PPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIG 120

Query: 121 FLGV 125
           FLGV
Sbjct: 121 FLGV 124

[Close]

BLAST of Carg00115 vs. NCBI nr
Match: XP_023546806.1 (formin-like protein 20 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 232.3 bits (591), Expect = 2.3e-57
Identity = 120/125 (96.00%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFS-FLFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPP 60
           MCIQTRPRYALFIFS F+F LSINVVLTHGFLSSKKLDESTGGDDP VKCTPCTHNPPPP
Sbjct: 1   MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLI 120
           PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRV VELSAVALFGLI
Sbjct: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120

Query: 121 GFLGV 125
           GFLGV
Sbjct: 121 GFLGV 125

[Close]

BLAST of Carg00115 vs. NCBI nr
Match: XP_022942055.1 (probable glycosyltransferase 4 [Cucurbita moschata])

HSP 1 Score: 227.3 bits (578), Expect = 7.5e-56
Identity = 118/125 (94.40%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFS-FLFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPP 60
           MCIQTRPRYALFI S F F LS NVVLTHGFLSSKKLDESTGGDDP VKCTPCTHNPPPP
Sbjct: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLI 120
           PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRV VELSAVALFGLI
Sbjct: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120

Query: 121 GFLGV 125
           GFLGV
Sbjct: 121 GFLGV 125

[Close]

BLAST of Carg00115 vs. NCBI nr
Match: KGN50831.1 (hypothetical protein Csa_004723 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 2.3e-33
Identity = 81/124 (65.32%), Postives = 90/124 (72.58%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFLFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPPP 60
           MCIQ  P Y+L I  F  +LSIN+   HGF+SSKKLDE     D  VKCTPCT   PPPP
Sbjct: 1   MCIQPHPFYSLLILHFFLILSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRYSPPPP 60

Query: 61  PPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIG 120
           PPPKKP P YCPPPP PPSSFIY+LGPP NLYPI+ DFA ADRR V +EL  VA FGLIG
Sbjct: 61  PPPKKPPPIYCPPPPLPPSSFIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGLIG 120

Query: 121 FLGV 125
            + +
Sbjct: 121 LIAL 124

[Close]

BLAST of Carg00115 vs. ExPASy TrEMBL
Match: A0A6J1FVH5 (probable glycosyltransferase 4 OS=Cucurbita moschata OX=3662 GN=LOC111447243 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.6e-56
Identity = 118/125 (94.40%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFS-FLFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPP 60
           MCIQTRPRYALFI S F F LS NVVLTHGFLSSKKLDESTGGDDP VKCTPCTHNPPPP
Sbjct: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLI 120
           PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRV VELSAVALFGLI
Sbjct: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120

Query: 121 GFLGV 125
           GFLGV
Sbjct: 121 GFLGV 125

[Close]

BLAST of Carg00115 vs. ExPASy TrEMBL
Match: A0A0A0KSV7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283490 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.1e-33
Identity = 81/124 (65.32%), Postives = 90/124 (72.58%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFLFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPPP 60
           MCIQ  P Y+L I  F  +LSIN+   HGF+SSKKLDE     D  VKCTPCT   PPPP
Sbjct: 1   MCIQPHPFYSLLILHFFLILSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRYSPPPP 60

Query: 61  PPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIG 120
           PPPKKP P YCPPPP PPSSFIY+LGPP NLYPI+ DFA ADRR V +EL  VA FGLIG
Sbjct: 61  PPPKKPPPIYCPPPPLPPSSFIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGLIG 120

Query: 121 FLGV 125
            + +
Sbjct: 121 LIAL 124

[Close]

BLAST of Carg00115 vs. ExPASy TrEMBL
Match: A0A6J1DRJ1 (acrosin-like OS=Momordica charantia OX=3673 GN=LOC111022525 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 4.0e-31
Identity = 85/126 (67.46%), Postives = 95/126 (75.40%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFLFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCT--HNPPP 60
           M IQT+      I + L +LSINVV  HG +SS KLD STGGD   VKCTPCT  + PPP
Sbjct: 1   MWIQTQ------ILNLLLILSINVVTIHGLISSNKLDGSTGGDS-TVKCTPCTRYNPPPP 60

Query: 61  PPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGL 120
           PPPPPKKP  +YCPPPPPPPSSFIY+LGPPGNLYPI +DFAG  RRRV VEL  VAL GL
Sbjct: 61  PPPPPKKPPSSYCPPPPPPPSSFIYMLGPPGNLYPIGQDFAGG-RRRVAVELPVVALLGL 118

Query: 121 IGFLGV 125
           +GF+ V
Sbjct: 121 MGFIAV 118

[Close]

BLAST of Carg00115 vs. ExPASy TrEMBL
Match: A0A5C7HJP2 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_018540 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.0e-14
Identity = 59/114 (51.75%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 28  HGFLSSKKLDESTGGDDPRVKCTPC---THNPPPPPPPPKKPSPAYCPPPPPPPS----- 87
           +G   S+KLDESTGG D  VKCTP    T +PPPP PPP  P P   PPPPPPP+     
Sbjct: 138 NGLNHSRKLDESTGGGDQGVKCTPSCIPTPSPPPPSPPPPCPPPPALPPPPPPPAAPKKP 197

Query: 88  ---------SFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIGFLGV 125
                    SFIY+ GPPG+LYPID DF+GA RR++   +S++ L G +G LGV
Sbjct: 198 PTQYCPPPPSFIYMTGPPGDLYPIDSDFSGA-RRQLFSPISSI-LVGFVGLLGV 249

[Close]

BLAST of Carg00115 vs. ExPASy TrEMBL
Match: A5B8N9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g04830 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.5e-14
Identity = 55/105 (52.38%), Postives = 67/105 (63.81%), Query Frame = 0


Query: 32  SSKKLDES--TGGDDPRVKC-------TPCTHNPPP-----PPPPPKKPSPAYCPPPPPP 91
           +S+KLDES  +G  D  VKC        PC  +PPP     PPPPPKKP   YCPPPPPP
Sbjct: 31  NSRKLDESPASGSPDAGVKCGGCSSCQNPCNQSPPPPPPPSPPPPPKKPRAPYCPPPPPP 90

Query: 92  PSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIGFL 123
           P+SF+Y+ GPPG LYPID+D+ GA  R  +V L  +A  GL+  L
Sbjct: 91  PASFLYVTGPPGTLYPIDQDYGGAG-RNFMVGLPILAGCGLLNLL 134

[Close]

BLAST of Carg00115 vs. TAIR 10
Match: AT1G23040.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 78.2 bits (191), Expect = 5.2e-15
Identity = 52/110 (47.27%), Postives = 66/110 (60.00%), Query Frame = 0


Query: 31  LSSKKLDESTGGDDPRVKCTP-CTHNPPPPPPPPKKPSPAYCPP---------------- 90
           L ++KLDE     DP +KC+P C  NPPPP PPP  P P  CPP                
Sbjct: 38  LEARKLDEV----DP-IKCSPSCIQNPPPPSPPPPSPPPPACPPPPALPPPPPKKVSSYC 97

Query: 91  PPPPPSSFIYILGPPGNLYPIDRDF-AGADRRRVVVELSAVALFGLIGFL 123
           PPPPP++F+YI GPPGNLYP+D  F A A +  +VV+LS +  FG++ FL
Sbjct: 98  PPPPPANFLYITGPPGNLYPVDEQFGAAAGKSFMVVKLSGLIAFGIMAFL 142

[Close]

BLAST of Carg00115 vs. TAIR 10
Match: AT1G70990.1 (proline-rich family protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-12
Identity = 52/134 (38.81%), Postives = 76/134 (56.72%), Query Frame = 0


Query: 4   QTRPRYALFIFSFLFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHN-PPPPPPP 63
           +T+   A  + + +F+    ++      +++KL+E     DP +KCTPC  N PPP PPP
Sbjct: 45  RTKALAATLLTTVVFLTFPMIINASDSSTNRKLEE-----DP-IKCTPCLQNIPPPSPPP 104

Query: 64  PKKPSPAY-CPPP------------PPPPSSFIYILGPPGNLYPIDRDF-AGADRRRVVV 123
           P  P P+  CPPP            PPPPS++IY+ GPPG LYPID+ F A   +   VV
Sbjct: 105 PSPPPPSQACPPPPLPPSPPKKSYCPPPPSTYIYMTGPPGELYPIDQQFGAAVTKSFTVV 164

[Close]

BLAST of Carg00115 vs. TAIR 10
Match: AT1G02405.1 (proline-rich family protein )

HSP 1 Score: 41.6 bits (96), Expect = 5.4e-04
Identity = 38/83 (45.78%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 45  PRVKCTPCTHNPPPPPPPPKKPS--PAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGAD 104
           P   CTP    PPP PPPPKK S  P+  PPPPPPP        PPG+LYPI+  +  A 
Sbjct: 56  PPPSCTPSP--PPPSPPPPKKSSCPPSPLPPPPPPPPPNYVFTYPPGDLYPIENYYGAA- 115

Query: 105 RRRVVVELSAVA---LFGLIGFL 123
              V VE  +V    +FG++ FL
Sbjct: 116 ---VAVESFSVMKLFVFGVMVFL 132

The following BLAST results are available for this feature:

BLAST of Carg00115 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031461.1	1.0e-60	100.00	hypothetical protein SDJN02_05501, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6600825.1	2.9e-60	99.19	hypothetical protein SDJN03_06058, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023546806.1	2.3e-57	96.00	formin-like protein 20 [Cucurbita pepo subsp. pepo]	[more]
XP_022942055.1	7.5e-56	94.40	probable glycosyltransferase 4 [Cucurbita moschata]	[more]
KGN50831.1	2.3e-33	65.32	hypothetical protein Csa_004723 [Cucumis sativus]	[more]

BLAST of Carg00115 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg00115 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FVH5	3.6e-56	94.40	probable glycosyltransferase 4 OS=Cucurbita moschata OX=3662 GN=LOC111447243 PE=...	[more]
A0A0A0KSV7	1.1e-33	65.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283490 PE=4 SV=1	[more]
A0A6J1DRJ1	4.0e-31	67.46	acrosin-like OS=Momordica charantia OX=3673 GN=LOC111022525 PE=4 SV=1	[more]
A0A5C7HJP2	2.0e-14	51.75	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_018540 PE=4 SV=1	[more]
A5B8N9	4.5e-14	52.38	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g04830 PE=4 SV=...	[more]

BLAST of Carg00115 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23040.1	5.2e-15	47.27	hydroxyproline-rich glycoprotein family protein	[more]
AT1G70990.1	1.1e-12	38.81	proline-rich family protein	[more]
AT1G02405.1	5.4e-04	45.78	proline-rich family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..73
None	No IPR available	PANTHER	PTHR35094	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2	coord: 8..122
None	No IPR available	PANTHER	PTHR35094:SF1	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2	coord: 8..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00115-RA	Carg00115-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0016740	transferase activity