Carg00102 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00102
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr04: 5313825 .. 5314714 (-)
RNA-Seq Expression	Carg00102
Synteny	Carg00102

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTGATTCATTTCGAGAAATGTTGCGTAAGATTTTCTCTTTTATATTGTTGAAGAGTTGATCCTATGAATGGATTCTAATTAATTGGCTAATACGAGTAATGAATGCAGGGGAGGTACTTAGTGATCAGCATAGGGTTCCGCAAGAGAATGATGCAATTATTTGGCATAATACAAATTTGCAATCTTTGTTTAGTCTCATTCCTCAAGAACGTCGAGTAATAGGTACGTTTATAGTACGTAATCAATTTGTGGCTAGAAAGTGCTGATAGCTCGGTTTGAATATCGACCTCCATATTTAAGTTTACTTAACTTAGTTTTTATGGATGTTTATAGGATGCTTGCTAGAGGATCAATATGGAAATAAACAAGAAATTAAGATTCATGACTTTTTGCGATTTTTGGTTCATCCTAATGAAAATTTGGTGTTTGTGGTATGTATCACTTGAAAGAAAACAAAAGCGTTTTCTCGATTAAAATTAAGAATATTTGTTTGTTTATTTATTGGGATTAGGTCGGTGACTTTCGAAATTACAGAGTGCTCGAGGAAGAGATCGATCAATATGTCAAAGGTACTAAATTTTTTCACTTCTTTCTTTTTATAAATTTTGGAATGATAATTCAATTAGTTAATGTATTAAAAGATGAATGATTTTTTTTTTCTTTTTGTAGTTTCGGACCCCGGGACACCTACGAATCTGTGTGTTCGATTCATTTGTCAAGAATGTCAACGAAGATGGAATCTTATATAAGGTTAAGAGTATCTCGAAACGAATATCTCATGCTTAATGTCTTAGTTTGAATTTAACTTTTCCTCAATAATTATTCAACTCGATGAACATATCATATGATTTTCGAGTTAATTTTTTTTTAATTTTAGTTAACATTTAG

mRNA sequence

TGTTGATTCATTTCGAGAAATGTTGCGTAAGATTTTCTCTTTTATATTGTTGAAGAGTTGATCCTATGAATGGATTCTAATTAATTGGCTAATACGAGTAATGAATGCAGGGGAGGTACTTAGTGATCAGCATAGGGTTCCGCAAGAGAATGATGCAATTATTTGGCATAATACAAATTTGCAATCTTTGTTTAGTCTCATTCCTCAAGAACGTCGAGTAATAGGATGCTTGCTAGAGGATCAATATGGAAATAAACAAGAAATTAAGATTCATGACTTTTTGCGATTTTTGGTTCATCCTAATGAAAATTTGGTGTTTGTGGTCGGTGACTTTCGAAATTACAGAGTGCTCGAGGAAGAGATCGATCAATATGTCAAAGTTAACATTTAG

Coding sequence (CDS)

ATGAATGCAGGGGAGGTACTTAGTGATCAGCATAGGGTTCCGCAAGAGAATGATGCAATTATTTGGCATAATACAAATTTGCAATCTTTGTTTAGTCTCATTCCTCAAGAACGTCGAGTAATAGGATGCTTGCTAGAGGATCAATATGGAAATAAACAAGAAATTAAGATTCATGACTTTTTGCGATTTTTGGTTCATCCTAATGAAAATTTGGTGTTTGTGGTCGGTGACTTTCGAAATTACAGAGTGCTCGAGGAAGAGATCGATCAATATGTCAAAGTTAACATTTAG

Protein sequence

MNAGEVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVNI

Homology

[Close]

BLAST of Carg00102 vs. NCBI nr
Match: KAG7031448.1 (hypothetical protein SDJN02_05488 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200.7 bits (509), Expect = 5.8e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MNAGEVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDF 60
          MNAGEVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDF
Sbjct: 1  MNAGEVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDF 60

Query: 61 LRFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVNI 97
          LRFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVNI
Sbjct: 61 LRFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVNI 96

[Close]

BLAST of Carg00102 vs. NCBI nr
Match: XP_022942054.1 (uncharacterized protein LOC111447242 [Cucurbita moschata])

HSP 1 Score: 188.7 bits (478), Expect = 2.3e-44
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 5   EVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL 64
           EVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL
Sbjct: 99  EVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL 158

Query: 65  VHPNENLVFVVGDFRNYRVLEEEIDQYVKVN 96
           VHPNENLVFVVGDFRNYRVLEEEIDQYVKV+
Sbjct: 159 VHPNENLVFVVGDFRNYRVLEEEIDQYVKVS 189

[Close]

BLAST of Carg00102 vs. NCBI nr
Match: KAG6600811.1 (hypothetical protein SDJN03_06044, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188.7 bits (478), Expect = 2.3e-44
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 5   EVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL 64
           EVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL
Sbjct: 99  EVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL 158

Query: 65  VHPNENLVFVVGDFRNYRVLEEEIDQYVKVN 96
           VHPNENLVFVVGDFRNYRVLEEEIDQYVKV+
Sbjct: 159 VHPNENLVFVVGDFRNYRVLEEEIDQYVKVS 189

[Close]

BLAST of Carg00102 vs. NCBI nr
Match: XP_022989850.1 (uncharacterized protein LOC111486913 [Cucurbita maxima])

HSP 1 Score: 184.9 bits (468), Expect = 3.3e-43
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 5   EVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL 64
           EVLSDQHRV QENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL
Sbjct: 99  EVLSDQHRVLQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL 158

Query: 65  VHPNENLVFVVGDFRNYRVLEEEIDQYVKVN 96
           VHPNENLVFVVGDFRNYRVLEEEIDQYVKV+
Sbjct: 159 VHPNENLVFVVGDFRNYRVLEEEIDQYVKVS 189

[Close]

BLAST of Carg00102 vs. ExPASy TrEMBL
Match: A0A6J1FQ78 (uncharacterized protein LOC111447242 OS=Cucurbita moschata OX=3662 GN=LOC111447242 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 5   EVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL 64
           EVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL
Sbjct: 99  EVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL 158

Query: 65  VHPNENLVFVVGDFRNYRVLEEEIDQYVKVN 96
           VHPNENLVFVVGDFRNYRVLEEEIDQYVKV+
Sbjct: 159 VHPNENLVFVVGDFRNYRVLEEEIDQYVKVS 189

[Close]

BLAST of Carg00102 vs. ExPASy TrEMBL
Match: A0A6J1JNI2 (uncharacterized protein LOC111486913 OS=Cucurbita maxima OX=3661 GN=LOC111486913 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.6e-43
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 5   EVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL 64
           EVLSDQHRV QENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL
Sbjct: 99  EVLSDQHRVLQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL 158

Query: 65  VHPNENLVFVVGDFRNYRVLEEEIDQYVKVN 96
           VHPNENLVFVVGDFRNYRVLEEEIDQYVKV+
Sbjct: 159 VHPNENLVFVVGDFRNYRVLEEEIDQYVKVS 189

[Close]

BLAST of Carg00102 vs. ExPASy TrEMBL
Match: A0A0A0KJD0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G056070 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.0e-10
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 5  EVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLL 46
          EVLSDQHRVPQENDAI+WH TNLQ+LF+  P+ERR+IG LL
Sbjct: 51 EVLSDQHRVPQENDAIVWHRTNLQALFNHFPRERRIIGTLL 91

The following BLAST results are available for this feature:

BLAST of Carg00102 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031448.1	5.8e-48	100.00	hypothetical protein SDJN02_05488 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022942054.1	2.3e-44	98.90	uncharacterized protein LOC111447242 [Cucurbita moschata]	[more]
KAG6600811.1	2.3e-44	98.90	hypothetical protein SDJN03_06044, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022989850.1	3.3e-43	97.80	uncharacterized protein LOC111486913 [Cucurbita maxima]	[more]

BLAST of Carg00102 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg00102 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FQ78	1.1e-44	98.90	uncharacterized protein LOC111447242 OS=Cucurbita moschata OX=3662 GN=LOC1114472...	[more]
A0A6J1JNI2	1.6e-43	97.80	uncharacterized protein LOC111486913 OS=Cucurbita maxima OX=3661 GN=LOC111486913...	[more]
A0A0A0KJD0	4.0e-10	78.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G056070 PE=4 SV=1	[more]

BLAST of Carg00102 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00102-RA	Carg00102-RA	mRNA