Carg00096 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00096
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 5281950 .. 5282664 (+)
RNA-Seq ExpressionCarg00096
SyntenyCarg00096
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATGGCCCCGTTTCTTCAATCTGTAATTATAAGTGCTGTAATTCCTGTTCCTTTCCCTCCTCTCCCAATCTCATTCCTCAACCGAATCACCAGTGTCTGATCCACCTACAAGCTTTGGGGAAATGGCAAAGCGGGATTGTTGATTGGCGGAAGAGTTCATCGGTATTGCAGTGCGGAACTCGTCGGGTTGAGTAGGTGAGTGTGAGAAATTTGGATTTGTTGTTGTTGTTGTTGAAGTTGAGAAAATCGGTGTGTGTTTTTTGTTTAGTGGTTCGAGGGTTTTGACTGCGTAAGGTTTTTTGTTTTCGTGTTTTGGAAGTTTTGTTTTGGGGGGGATTTAATAATGCCTGCAGGTTTTGAATAAAGAATTGGATGCGAATCATGGGGAGGAGAGAAGAATCGTTTAATTTCTTGTCTGTGAGTTCACGTGAAGGTTTTGTCACGATGTCCGGGAGTTCTTACAAGTGAACGAGTGACTCTAGTCGGTGTTTTCCCGAGGGTATCGCCATTGGAGGGCATCTTGTTCTTAACTCCATGTCTACAGAAGGTAAGACTGTTTGCAATGCCAATGCGAATGAGCTGCAAGAGGTAGAGGACTGTGTTGTCTTTCCTTGTTTTGGTCAAAGATTTTTATGGCTCTGAAAAGGACTCCAACTGGCGCCATTTTGAAAAGAAAGGTTTCTGAGAGTTCAGGTTCCTACGGCGAGTAG

mRNA sequence

ATGGCAATGGCCCCGTTTCTTCAATCTGTTTTGTCACGATGTCCGGGAGTTCTTACAAGTGAACGAGTGACTCTAGTCGGTGTTTTCCCGAGGGTATCGCCATTGGAGGGCATCTTGTTCTTAACTCCATGTCTACAGAAGATTTTTATGGCTCTGAAAAGGACTCCAACTGGCGCCATTTTGAAAAGAAAGGTTTCTGAGAGTTCAGGTTCCTACGGCGAGTAG

Coding sequence (CDS)

ATGGCAATGGCCCCGTTTCTTCAATCTGTTTTGTCACGATGTCCGGGAGTTCTTACAAGTGAACGAGTGACTCTAGTCGGTGTTTTCCCGAGGGTATCGCCATTGGAGGGCATCTTGTTCTTAACTCCATGTCTACAGAAGATTTTTATGGCTCTGAAAAGGACTCCAACTGGCGCCATTTTGAAAAGAAAGGTTTCTGAGAGTTCAGGTTCCTACGGCGAGTAG

Protein sequence

MAMAPFLQSVLSRCPGVLTSERVTLVGVFPRVSPLEGILFLTPCLQKIFMALKRTPTGAILKRKVSESSGSYGE
Homology
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BLAST of Carg00096 vs. NCBI nr
Match: KAG7031442.1 (hypothetical protein SDJN02_05482, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.4 bits (368), Expect = 1.0e-31
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MAMAPFLQSVLSRCPGVLTSERVTLVGVFPRVSPLEGILFLTPCLQKIFMALKRTPTGAI 60
          MAMAPFLQSVLSRCPGVLTSERVTLVGVFPRVSPLEGILFLTPCLQKIFMALKRTPTGAI
Sbjct: 1  MAMAPFLQSVLSRCPGVLTSERVTLVGVFPRVSPLEGILFLTPCLQKIFMALKRTPTGAI 60

Query: 61 LKRKVSESSGSYGE 75
          LKRKVSESSGSYGE
Sbjct: 61 LKRKVSESSGSYGE 74

The following BLAST results are available for this feature:
BLAST of Carg00096 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031442.11.0e-31100.00hypothetical protein SDJN02_05482, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg00096 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00096 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00096 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00096-RACarg00096-RAmRNA