![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Carg00090 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GATTGAGGTTCATAAACCGTGATGTTAACAAGGACACAGAACCTTTTTCATTTTCTAGCTTTGTCATCATCGTTCTTTTGTGAATACTCTTTACTGTGTAGATATTCTTACCTCAGTGGTTTCTCATTTTCATTTTTGGTACGTGTAGAATTATCCGTCTGTCTTATCCGTTGACTATGGGGGCATGGTCATTTGATTATGTAGTCTGCTTGGTGATAATAGCTCTTTAATTTTTTTATGTTGTTTGATGGTGTTGAATAAATTCGATTACTAATATCTGATTAGGTATAAAAAGTAGGTTGTGCAGATAGAAGGAAACCAGAGATGAGTATTGGTGGTGAAAAAGGTTCTGTGTCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCGTCCTGTAGTTGTGAAACTCAATTCTGGTGTTGACTACCGAGGTATATTTGCCTGTTCAATTTTGTTTCATTTTTATGCTAAGAGTTGTATCGTTACTTCTAAGAAATTACCTGCAAATGGAGGCTCTTTTTTTTTTTTTTTTTTGGTTCATCAATCTTCCTTGTTGACAAAATGGCGTCATTTGTCAACTTATTTTTTTGTCCTTTCATATCTTCTCTTTCTTATGACCTTAATTCAACGTTGTGTCTTCCATACGTTGTACTGCTTCCTTCCGTTCATATATTCTCTTTATCAATTTCTTGTTCTTCAAATCTGACTTGCTTGTAAAAGATGACTTTTTAATAGAAACTGAGCTCCGGAAATGAAGGAAAAAAAAAAATGAAGGAATAAAAAATATGCATACAAATAAGTGCCCAAAAAGTGGAGCTGAAGTCAAAACTTAATGCCTTGGTAGAAAGGGTCCAATCCAAAATAATTAGAGAATCTTTTGAAATTGACATTCTCCCACTAGAGTATGCTTGAGACAGACGCCTAGAGAGAGGCATTAAACATGCCAAGAGCCTTCACATCTCCTAACATCTTCCCAAGATCTGTCAATCCCTCCAAAAAATCTCTTATTTTTCTTCAACTAAAATGCTCCATAGAATAGGCAATAAACCAGTCTGTGGAAGCTTGCAACCCTTATCTCGAAAAGGCAGATGGAGGTCTCCTCCATGATGAGGCAACAATCTGAGAGGAATGTTGGGAGACAATCTTCATGGCAAGCCAACAAGTGTACTTTGGGTGTGGCGATTGTAGGAGAGAGGAACAATAGGATCTTTAGCATTATATGTAGCATGACCGTAAGGATGTTTAGTCTCTTGTTTTTCTCTGAACATTTGTGTCCTGTACTTTTTTAAAAAAAAAAAATTAATATTTAGGTCTTATTTTGCTTGATTGGAGTCCCTTTTGTGGGATTTTATGTGTAGCATGACAGTAAGGATGTCCTTGTCTTCTTTCACTTTTTCCCAGGAAAATGTGATTCATTTTAAAAATCAAAATCTGATAGAAATGTTATTAGGAATATTATTTGGACATCAAGGTATATATAGTGGGGGTGGGAAATAGTAAAGATATTTATGGGTTGATTTCGTTGTCTCAAGTTTGAGTGGAGGGTCCAAGTAGGCCTAATTAGTCGGGAGTTATTGTATTCCTCATCTTTCAGTACTATTTTAGCTATTTGGGTTCTACCACAACCACTGTCATGGCCATGCACACACGAAAAGTCTCCAATAGAGTTCCAAATCCTGATATCATACTTGGAACCCTAAAGAATATGACCCAAATCCTTAGACACACCTCCTTGGCAAGAATGCATAAATGAATTGAATAACGTGCCCAAGAAATGATTGAAGAAATGGGGAACGACCACAAAGAGGAAAGCTGGTACAAACAACAAAACAAGTTACCAAGGGGATTCTCACCACCAAGGAAATAGGTGTTTGAACAATTCTTAGATGAAGCAATTAATGAAATTGTAGAAAAAGGGACCACTCCCAAAGAGATGGATTTTTTAGGGTTCTTGAAAGTGCACCCAACCCTTTCCCTGAGGTTCGTTCGAAAGGTCGAGGGTCATAAGTGCTTATTATAAACATTACGCTACCAAGTACTTGCCCCAAAGGAAACTATTTAGCCAGAAAGCCTCATTATGAATCCTCAAATTGCTGACCTAACCCTCCAAACTCAATGTCTTATAACACTCTCCCGACTAACCAAATATGAACCGCCCCCTTTTCATCACTCCCACAAGAAACATGAACATTTGTTTGACAAATGATTTGATTTTAAACATGATCGTTTGTCCTCCTTTGTATTTGAAAAACAGGTAAAATTTATATTGAATTCTAATGTGAAAATCCCATTATATGTTTCATTGCAAAGGTATTCTTGCCTGTCTGGATGGATACATGAACATAGCAATGGAGCAGACCGAAGAATACGTAAATGGGCAGTTGAAAAACAAATATGGCGATGCTTTCATCCGTGGAAATAACGGTAAATACAGTAGTCTTTGAAAATCTCGATGTCTTGAGAATAGTCTGAACTTTGATGTCTTAATGCAGTTCTGTACATCAGTACTTCGAAGAGGACATTAGCAGAAGGGTCTTCTTAGCGTGTAGCTAAGACTCCCGACGGGAAATGCCACATCCTTTGCAGTACGTGATGTTCCTTCCTTCAGTCTCATGCTGTAAAGTGAGAGATCAATCGGAATTGGAAACTCATCATTGAAATTGTAATGTACAATGACGTAGAATCCACCCATGGCGCTATGCTGTTCTTGTTCTTGTGAACAACTTCGAT GATTGAGGTTCATAAACCGTGATGTTAACAAGGACACAGAACCTTTTTCATTTTCTAGCTTTGTCATCATCATATTCTTACCTCAGTGGTTTCTCATTTTCATTTTTGGTACGTGTAGAATTATCCGTCTGTCTTATCCGTTGACTATGGGGGCATGGTCATTTGATTATGTAGTCTGCTTGGTGATAATAGCTCTTTAATTTTTTTATGTTGTTTGATGGTGTTGAATAAATTCGATTACTAATATCTGATTAGGTATAAAAAGTAGGTTGTGCAGATAGAAGGAAACCAGAGATGAGTATTGGTGGTGAAAAAGGTTCTGTGTCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCGTCCTGTAGTTGTGAAACTCAATTCTGGTGTTGACTACCGAGGTATTCTTGCCTGTCTGGATGGATACATGAACATAGCAATGGAGCAGACCGAAGAATACGTAAATGGGCAGTTGAAAAACAAATATGGCGATGCTTTCATCCGTGGAAATAACGTTCTGTACATCAGTACTTCGAAGAGGACATTAGCAGAAGGGTCTTCTTAGCGTGTAGCTAAGACTCCCGACGGGAAATGCCACATCCTTTGCAGTACGTGATGTTCCTTCCTTCAGTCTCATGCTGTAAAGTGAGAGATCAATCGGAATTGGAAACTCATCATTGAAATTGTAATGTACAATGACGTAGAATCCACCCATGGCGCTATGCTGTTCTTGTTCTTGTGAACAACTTCGAT ATGAGTATTGGTGGTGAAAAAGGTTCTGTGTCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCGTCCTGTAGTTGTGAAACTCAATTCTGGTGTTGACTACCGAGGTATTCTTGCCTGTCTGGATGGATACATGAACATAGCAATGGAGCAGACCGAAGAATACGTAAATGGGCAGTTGAAAAACAAATATGGCGATGCTTTCATCCGTGGAAATAACGTTCTGTACATCAGTACTTCGAAGAGGACATTAGCAGAAGGGTCTTCTTAG MSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS Homology
BLAST of Carg00090 vs. NCBI nr
Match: KAG6600796.1 (Eukaryotic translation initiation factor 2 subunit 3, Y-linked, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 186.0 bits (471), Expect = 1.4e-43 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
BLAST of Carg00090 vs. NCBI nr
Match: XP_022942809.1 (U6 snRNA-associated Sm-like protein LSm6 [Cucurbita moschata] >XP_022942810.1 U6 snRNA-associated Sm-like protein LSm6 [Cucurbita moschata] >XP_022942811.1 U6 snRNA-associated Sm-like protein LSm6 [Cucurbita moschata] >XP_023513637.1 U6 snRNA-associated Sm-like protein LSm6 [Cucurbita pepo subsp. pepo] >XP_023513644.1 U6 snRNA-associated Sm-like protein LSm6 [Cucurbita pepo subsp. pepo] >XP_023513651.1 U6 snRNA-associated Sm-like protein LSm6 [Cucurbita pepo subsp. pepo] >KAG7031436.1 Sm-like protein LSM36B [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 186.0 bits (471), Expect = 1.4e-43 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
BLAST of Carg00090 vs. NCBI nr
Match: XP_004140401.1 (sm-like protein LSM36B [Cucumis sativus] >XP_008460221.1 PREDICTED: sm-like protein LSM36B [Cucumis melo] >XP_011655091.1 sm-like protein LSM36B [Cucumis sativus] >XP_022155112.1 sm-like protein LSM36B [Momordica charantia] >XP_031742218.1 sm-like protein LSM36B [Cucumis sativus] >XP_031742219.1 sm-like protein LSM36B [Cucumis sativus] >XP_031742220.1 sm-like protein LSM36B [Cucumis sativus] >XP_031742221.1 sm-like protein LSM36B [Cucumis sativus] >XP_038877209.1 sm-like protein LSM36B [Benincasa hispida] >XP_038877210.1 sm-like protein LSM36B [Benincasa hispida] >KGN50806.1 hypothetical protein Csa_018833 [Cucumis sativus]) HSP 1 Score: 184.5 bits (467), Expect = 4.1e-43 Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0
BLAST of Carg00090 vs. NCBI nr
Match: KAG6599859.1 (Sm-like protein LSM36B, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 182.6 bits (462), Expect = 1.6e-42 Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 0
BLAST of Carg00090 vs. NCBI nr
Match: XP_023539899.1 (uncharacterized protein LOC111800438 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 182.6 bits (462), Expect = 1.6e-42 Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 0
BLAST of Carg00090 vs. ExPASy Swiss-Prot
Match: O22823 (Sm-like protein LSM36B OS=Arabidopsis thaliana OX=3702 GN=LSM6B PE=1 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 2.4e-38 Identity = 77/91 (84.62%), Postives = 84/91 (92.31%), Query Frame = 0
BLAST of Carg00090 vs. ExPASy Swiss-Prot
Match: Q9M1Z3 (Sm-like protein LSM6A OS=Arabidopsis thaliana OX=3702 GN=LSM6A PE=1 SV=1) HSP 1 Score: 154.5 bits (389), Expect = 6.0e-37 Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0
BLAST of Carg00090 vs. ExPASy Swiss-Prot
Match: P62312 (U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens OX=9606 GN=LSM6 PE=1 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 1.8e-33 Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0
BLAST of Carg00090 vs. ExPASy Swiss-Prot
Match: P62313 (U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus OX=10090 GN=Lsm6 PE=1 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 1.8e-33 Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0
BLAST of Carg00090 vs. ExPASy Swiss-Prot
Match: A8NHT8 (U6 snRNA-associated Sm-like protein LSm6 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) OX=240176 GN=LSM6 PE=3 SV=2) HSP 1 Score: 115.5 bits (288), Expect = 3.1e-25 Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 0
BLAST of Carg00090 vs. ExPASy TrEMBL
Match: A0A6J1FPX7 (U6 snRNA-associated Sm-like protein LSm6 OS=Cucurbita moschata OX=3662 GN=LOC111447731 PE=3 SV=1) HSP 1 Score: 186.0 bits (471), Expect = 6.9e-44 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
BLAST of Carg00090 vs. ExPASy TrEMBL
Match: A0A0A0KSS9 (Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G266840 PE=3 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 2.0e-43 Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0
BLAST of Carg00090 vs. ExPASy TrEMBL
Match: A0A6J1DNH0 (sm-like protein LSM36B OS=Momordica charantia OX=3673 GN=LOC111022247 PE=3 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 2.0e-43 Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0
BLAST of Carg00090 vs. ExPASy TrEMBL
Match: A0A1S3CBJ6 (sm-like protein LSM36B OS=Cucumis melo OX=3656 GN=LOC103499106 PE=3 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 2.0e-43 Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0
BLAST of Carg00090 vs. ExPASy TrEMBL
Match: A0A6J1JLP5 (uncharacterized protein LOC111485552 OS=Cucurbita maxima OX=3661 GN=LOC111485552 PE=4 SV=1) HSP 1 Score: 182.6 bits (462), Expect = 7.6e-43 Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 0
BLAST of Carg00090 vs. TAIR 10
Match: AT2G43810.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 159.1 bits (401), Expect = 1.7e-39 Identity = 77/91 (84.62%), Postives = 84/91 (92.31%), Query Frame = 0
BLAST of Carg00090 vs. TAIR 10
Match: AT2G43810.2 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 159.1 bits (401), Expect = 1.7e-39 Identity = 77/91 (84.62%), Postives = 84/91 (92.31%), Query Frame = 0
BLAST of Carg00090 vs. TAIR 10
Match: AT3G59810.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 154.5 bits (389), Expect = 4.3e-38 Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0
BLAST of Carg00090 vs. TAIR 10
Match: AT4G30220.1 (small nuclear ribonucleoprotein F ) HSP 1 Score: 76.3 bits (186), Expect = 1.5e-14 Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 0
BLAST of Carg00090 vs. TAIR 10
Match: AT4G30220.2 (small nuclear ribonucleoprotein F ) HSP 1 Score: 76.3 bits (186), Expect = 1.5e-14 Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|