Carg00035 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00035
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr04: 4968069 .. 4969003 (-)
RNA-Seq Expression	Carg00035
Synteny	Carg00035

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCTTTTAGCTTCTTGCTTCCCTCTGATCTTAGGGTTTTCATTGTCAATCTTCGCGGCTTTATTTATCGGCGATGGCGAAGAACAGGAATAAGAAGAAGAAGGGAAGTGGAGCTATTTCAATGGACATAACCGAAAAATTCTGTTCACGAGCTCCCTCAAGGTACATTTCAGTTATGTGAAAAGGGATTGAACTTAACAGTATCAGAAAGAATGAGAATTTATCTTGTCCATTGCCCCCCTTTAAGATGTTTTAGATCTCCTGTGTTTTCATAGAGTAGTTTTCAAGTTTAACCAAGTGATTTCCCCCTTGAATTTAAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCTCAATCTGTAAGCTTCTACCTGGAAATTGTGCTTAATTTTTTAACCACAATTCATCATTGTTTCTGGTTTCAATTCAAGTGTTCGCAGTTCCTGATTTTAGATTCATTGCCTTTGTTGAATTGTCGTGCACAGAGATGAGTTAGATTTGGATTTCATCATTTCACATGACTAAGCCATTATCCCAAGTTTGTTCATTTTGAGATGAGGCCGAGAAAATTAGGATGCATCTTTTAATGCTATCAAACAAGAAGCTTTCTTGGGTTTGGTTGTCTCTGACGAATTTGTATTTTGATTGATGAGATCACATTGTCTAACGTTGGCTGCTCTACTAGATTTGTTTGGTATTGCCCTTTTCCTATTTGCACCACCCACTATGTCTGATCAGTACCCTTTGTTGGATAGAAAGTTGAAGAAGGGGGGAAGACCAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCATATCCAAGACCGAGCAATCCGCCGAGAAAATATTGAAAAATCAGGGGGAAACTACCAGGATACACTCTGCAAAAACATTGTATGAATCATACAGCCTTTAA

mRNA sequence

CTCCTTTTAGCTTCTTGCTTCCCTCTGATCTTAGGGTTTTCATTGTCAATCTTCGCGGCTTTATTTATCGGCGATGGCGAAGAACAGGAATAAGAAGAAGAAGGGAAGTGGAGCTATTTCAATGGACATAACCGAAAAATTCTGTTCACGAGCTCCCTCAAGATCACATTGTCTAACGTTGGCTGCTCTACTAGATTTGTTTGGTATTGCCCTTTTCCTATTTGCACCACCCACTATGTCTGATCAGTACCCTTTGTTGGATAGAAAGTTGAAGAAGGGGGGAAGACCAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCATATCCAAGACCGAGCAATCCGCCGAGAAAATATTGAAAAATCAGGGGGAAACTACCAGGATACACTCTGCAAAAACATTGTATGAATCATACAGCCTTTAA

Coding sequence (CDS)

ATGGCGAAGAACAGGAATAAGAAGAAGAAGGGAAGTGGAGCTATTTCAATGGACATAACCGAAAAATTCTGTTCACGAGCTCCCTCAAGATCACATTGTCTAACGTTGGCTGCTCTACTAGATTTGTTTGGTATTGCCCTTTTCCTATTTGCACCACCCACTATGTCTGATCAGTACCCTTTGTTGGATAGAAAGTTGAAGAAGGGGGGAAGACCAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCATATCCAAGACCGAGCAATCCGCCGAGAAAATATTGAAAAATCAGGGGGAAACTACCAGGATACACTCTGCAAAAACATTGTATGAATCATACAGCCTTTAA

Protein sequence

MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLTLAALLDLFGIALFLFAPPTMSDQYPLLDRKLKKGGRPMKRSKNVRKTKAISKTEQSAEKILKNQGETTRIHSAKTLYESYSL

Homology

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BLAST of Carg00035 vs. NCBI nr
Match: KAG7031381.1 (hypothetical protein SDJN02_05421 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.4 bits (568), Expect = 1.0e-54
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLTLAALLDLFGIALFLFAPPTMSDQYP 60
           MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLTLAALLDLFGIALFLFAPPTMSDQYP
Sbjct: 1   MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLTLAALLDLFGIALFLFAPPTMSDQYP 60

Query: 61  LLDRKLKKGGRPMKRSKNVRKTKAISKTEQSAEKILKNQGETTRIHSAKTLYESYSL 118
           LLDRKLKKGGRPMKRSKNVRKTKAISKTEQSAEKILKNQGETTRIHSAKTLYESYSL
Sbjct: 61  LLDRKLKKGGRPMKRSKNVRKTKAISKTEQSAEKILKNQGETTRIHSAKTLYESYSL 117

[Close]

BLAST of Carg00035 vs. NCBI nr
Match: XP_023538255.1 (uncharacterized protein LOC111799087 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 104.8 bits (260), Expect = 5.3e-19
Identity = 71/117 (60.68%), Postives = 74/117 (63.25%), Query Frame = 0


Query: 1   MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLTLAALLDLFGIALFLFAPPTMSDQYP 60
           MAKNRNKKKKGSGAISMDITE      P        A      G                
Sbjct: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVSESAVHKPASG---------------- 60

Query: 61  LLDRKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGETTRIHSAKTLYE 114
            L+ KLKKGGR MKRSKNVRKT    KAISK+EQSAEKILKNQG+TTRIHSAKTLYE
Sbjct: 61  ALNLKLKKGGRLMKRSKNVRKTKAMAKAISKSEQSAEKILKNQGKTTRIHSAKTLYE 101

[Close]

BLAST of Carg00035 vs. NCBI nr
Match: KAG6577394.1 (Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-14
Identity = 67/117 (57.26%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 1   MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLTLAALLDLFGIALFLFAPPTMSDQYP 60
           MAKN+NKKK+ SGAISMDITE      P        A      G                
Sbjct: 278 MAKNKNKKKR-SGAISMDITENTAQELPQAMDVSESAVHKPASG---------------- 337

Query: 61  LLDRKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGETTRIHSAKTLYE 114
            L+ KLKK GRPMKRSKNVRKT    KAISK EQSAEKILKNQ +TTRIHSAKTLYE
Sbjct: 338 ALNLKLKK-GRPMKRSKNVRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 376

[Close]

BLAST of Carg00035 vs. NCBI nr
Match: XP_022929206.1 (uncharacterized protein LOC111435867 [Cucurbita moschata] >KAG7015471.1 hypothetical protein SDJN02_23107 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-14
Identity = 67/117 (57.26%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 1   MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLTLAALLDLFGIALFLFAPPTMSDQYP 60
           MAKN+NKKK+ SGAISMDITE      P        A      G                
Sbjct: 1   MAKNKNKKKR-SGAISMDITENTAQELPQAMDVSESAVHKPASG---------------- 60

Query: 61  LLDRKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGETTRIHSAKTLYE 114
            L+ KLKK GRPMKRSKNVRKT    KAISK EQSAEKILKNQ +TTRIHSAKTLYE
Sbjct: 61  ALNLKLKK-GRPMKRSKNVRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 99

[Close]

BLAST of Carg00035 vs. NCBI nr
Match: XP_008452291.1 (PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-14
Identity = 65/117 (55.56%), Postives = 72/117 (61.54%), Query Frame = 0


Query: 1   MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLTLAALLDLFGIALFLFAPPTMSDQYP 60
           MAKNRNKKK+G GA+SMD+TE      P                 A+ + A         
Sbjct: 1   MAKNRNKKKRG-GAVSMDVTENSVHELPQ----------------AMDVSASTVHKPASG 60

Query: 61  LLDRKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGETTRIHSAKTLYE 114
            LD KLKK GRPMKRSKNVRKT    KAISK+EQS EKILKNQ +TTRI SAKTLYE
Sbjct: 61  ALDLKLKK-GRPMKRSKNVRKTKAIAKAISKSEQSMEKILKNQSKTTRIQSAKTLYE 99

[Close]

BLAST of Carg00035 vs. ExPASy TrEMBL
Match: A0A6J1EMH0 (uncharacterized protein LOC111435867 OS=Cucurbita moschata OX=3662 GN=LOC111435867 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 5.0e-15
Identity = 67/117 (57.26%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 1   MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLTLAALLDLFGIALFLFAPPTMSDQYP 60
           MAKN+NKKK+ SGAISMDITE      P        A      G                
Sbjct: 1   MAKNKNKKKR-SGAISMDITENTAQELPQAMDVSESAVHKPASG---------------- 60

Query: 61  LLDRKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGETTRIHSAKTLYE 114
            L+ KLKK GRPMKRSKNVRKT    KAISK EQSAEKILKNQ +TTRIHSAKTLYE
Sbjct: 61  ALNLKLKK-GRPMKRSKNVRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 99

[Close]

BLAST of Carg00035 vs. ExPASy TrEMBL
Match: A0A1S3BUB2 (uncharacterized protein LOC103493362 OS=Cucumis melo OX=3656 GN=LOC103493362 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 5.0e-15
Identity = 65/117 (55.56%), Postives = 72/117 (61.54%), Query Frame = 0


Query: 1   MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLTLAALLDLFGIALFLFAPPTMSDQYP 60
           MAKNRNKKK+G GA+SMD+TE      P                 A+ + A         
Sbjct: 1   MAKNRNKKKRG-GAVSMDVTENSVHELPQ----------------AMDVSASTVHKPASG 60

Query: 61  LLDRKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGETTRIHSAKTLYE 114
            LD KLKK GRPMKRSKNVRKT    KAISK+EQS EKILKNQ +TTRI SAKTLYE
Sbjct: 61  ALDLKLKK-GRPMKRSKNVRKTKAIAKAISKSEQSMEKILKNQSKTTRIQSAKTLYE 99

[Close]

BLAST of Carg00035 vs. ExPASy TrEMBL
Match: A0A6J1J4F8 (uncharacterized protein LOC111483316 OS=Cucurbita maxima OX=3661 GN=LOC111483316 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.5e-14
Identity = 66/117 (56.41%), Postives = 70/117 (59.83%), Query Frame = 0


Query: 1   MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLTLAALLDLFGIALFLFAPPTMSDQYP 60
           MAKN+NKK+  SGAISMDITE      P        A      G                
Sbjct: 1   MAKNKNKKR--SGAISMDITENTAHELPQAMDVSESAVHKPASG---------------- 60

Query: 61  LLDRKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGETTRIHSAKTLYE 114
            L+ KLKK GRPMKRSKNVRKT    KAISK EQSAEKILKNQ +TTRIHSAKTLYE
Sbjct: 61  ALNLKLKK-GRPMKRSKNVRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 98

[Close]

BLAST of Carg00035 vs. ExPASy TrEMBL
Match: A0A1S2XDI5 (uncharacterized protein LOC101502061 OS=Cicer arietinum OX=3827 GN=LOC101502061 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.8e-10
Identity = 55/117 (47.01%), Postives = 68/117 (58.12%), Query Frame = 0


Query: 1   MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLTLAALLDLFGIALFLFAPPTMSDQYP 60
           MAKNRNKK K +G +SMD T+ F S AP         A+     +A    A  T      
Sbjct: 1   MAKNRNKKNK-NGTVSMDTTDTFVSEAPQ--------AMDTSESVAKIKVAAST------ 60

Query: 61  LLDRKLKKGGRPMKRSKNVRKTKAISK----TEQSAEKILKNQGETTRIHSAKTLYE 114
             + K+K+ GRPMKRSKNVRK KAI+K     E+S EKI KN  + +R+ SAKTLYE
Sbjct: 61  --NLKIKQNGRPMKRSKNVRKVKAIAKAISANEKSVEKISKNDNKKSRVQSAKTLYE 100

[Close]

BLAST of Carg00035 vs. ExPASy TrEMBL
Match: A0A2Z6MMM9 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_101520 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.8e-10
Identity = 53/117 (45.30%), Postives = 67/117 (57.26%), Query Frame = 0


Query: 1   MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLTLAALLDLFGIALFLFAPPTMSDQYP 60
           MAKNRNKKKK +GA+SMD T+   S AP         A + + G                
Sbjct: 1   MAKNRNKKKK-NGAVSMDTTDVIVSEAPQAMDTSESVAKIKVAGAT-------------- 60

Query: 61  LLDRKLKKGGRPMKRSKNVRK----TKAISKTEQSAEKILKNQGETTRIHSAKTLYE 114
             + K+K+ GRPMKRSKNVRK     KAIS  E+SAEK+ K+  + +R+ SAKTLYE
Sbjct: 61  --NLKVKQNGRPMKRSKNVRKMKKIAKAISANEKSAEKVSKHDNKKSRVLSAKTLYE 100

The following BLAST results are available for this feature:

BLAST of Carg00035 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031381.1	1.0e-54	100.00	hypothetical protein SDJN02_05421 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023538255.1	5.3e-19	60.68	uncharacterized protein LOC111799087 [Cucurbita pepo subsp. pepo]	[more]
KAG6577394.1	1.0e-14	57.26	Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperm...	[more]
XP_022929206.1	1.0e-14	57.26	uncharacterized protein LOC111435867 [Cucurbita moschata] >KAG7015471.1 hypothet...	[more]
XP_008452291.1	1.0e-14	55.56	PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo]	[more]

BLAST of Carg00035 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg00035 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EMH0	5.0e-15	57.26	uncharacterized protein LOC111435867 OS=Cucurbita moschata OX=3662 GN=LOC1114358...	[more]
A0A1S3BUB2	5.0e-15	55.56	uncharacterized protein LOC103493362 OS=Cucumis melo OX=3656 GN=LOC103493362 PE=...	[more]
A0A6J1J4F8	2.5e-14	56.41	uncharacterized protein LOC111483316 OS=Cucurbita maxima OX=3661 GN=LOC111483316...	[more]
A0A1S2XDI5	2.8e-10	47.01	uncharacterized protein LOC101502061 OS=Cicer arietinum OX=3827 GN=LOC101502061 ...	[more]
A0A2Z6MMM9	4.8e-10	45.30	Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_101520 PE=4 SV...	[more]

BLAST of Carg00035 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..90
None	No IPR available	PANTHER	PTHR36385	OS07G0562900 PROTEIN	coord: 64..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00035-RA	Carg00035-RA	mRNA