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Carg00028 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTACATCTACTTTACTTGTTTTTTGAATGTGGTGGTACCTTCTTGACATTGAATCTTCCCTTGCCCAGTTTTAATCTGATTAATGTCTGTTAATCAATGATCATTTATTTTCTTCTCCACCTTGACCACTTGAACTGATCCCATTTGATGGTCAATACCCTGTTTTCGTTATTGTTTGTCATTGTTTCCTGCTGCTTTGTTCTAGAGAGAGCCACATCTTTTCTCTGAAAATCACATTCTCAACCACATTGGATCATTGCTGTCTTATCAACCTCCCCTAACCATGTCTAGCATTCAGATCTTTTCCTTAGTTCCACAGAGTTTAAAAGGTTGACCCTATCATGTCATGTCTTTGTCCCTTTCAGATGCTCGACGTTCTGTGTGCTGTAATTACTGACTACTTAGCTCAATATTTTCAGAAAGATATGGGAGGCAGAGGAGTTATTGGTGATAAATGGTCCATGAGGGTTCTTTGAGTCTGTGCCCTCGGGAGTGCGATCGGTAATTACTTGTAATCTTACATCAGTAGATGCTAAGTAAAATTCTTTATCTTCATATAAGCTATACCAAATCTTCCCAACTTGCTAATATTTGTGAGTTGTCTAGGTTTGTATATGGTTGCTCAAGAAAGACAATTACAGAACAGGCGAAGAATGTTGGCTGAGAGTCTGAAAGATGTGGAATCAGGAGGCTGTGGGGAAAGTGTTTAG ATGTACATCTACTTTACTTGTTTTTTGAATGTGGTGATGCTCGACGTTCTGTGTGCTGTAATTACTGACTACTTAGCTCAATATTTTCAGAAAGATATGGGAGGCAGAGGAGTTATTGGTTTGTATATGGTTGCTCAAGAAAGACAATTACAGAACAGGCGAAGAATGTTGGCTGAGAGTCTGAAAGATGTGGAATCAGGAGGCTGTGGGGAAAGTGTTTAG ATGTACATCTACTTTACTTGTTTTTTGAATGTGGTGATGCTCGACGTTCTGTGTGCTGTAATTACTGACTACTTAGCTCAATATTTTCAGAAAGATATGGGAGGCAGAGGAGTTATTGGTTTGTATATGGTTGCTCAAGAAAGACAATTACAGAACAGGCGAAGAATGTTGGCTGAGAGTCTGAAAGATGTGGAATCAGGAGGCTGTGGGGAAAGTGTTTAG MYIYFTCFLNVVMLDVLCAVITDYLAQYFQKDMGGRGVIGLYMVAQERQLQNRRRMLAESLKDVESGGCGESV Homology
BLAST of Carg00028 vs. NCBI nr
Match: KAG7031374.1 (hypothetical protein SDJN02_05414, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 145.2 bits (365), Expect = 2.2e-31 Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0
BLAST of Carg00028 vs. NCBI nr
Match: XP_023003115.1 (uncharacterized protein LOC111496793 [Cucurbita maxima] >XP_023003190.1 uncharacterized protein LOC111496793 [Cucurbita maxima] >XP_023003273.1 uncharacterized protein LOC111496793 [Cucurbita maxima]) HSP 1 Score: 70.5 bits (171), Expect = 6.9e-09 Identity = 40/59 (67.80%), Postives = 41/59 (69.49%), Query Frame = 0
BLAST of Carg00028 vs. NCBI nr
Match: XP_023540165.1 (uncharacterized protein LOC111800616 [Cucurbita pepo subsp. pepo] >XP_023540174.1 uncharacterized protein LOC111800616 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 70.5 bits (171), Expect = 6.9e-09 Identity = 40/59 (67.80%), Postives = 41/59 (69.49%), Query Frame = 0
BLAST of Carg00028 vs. NCBI nr
Match: XP_022943152.1 (uncharacterized protein LOC111447969 [Cucurbita moschata] >XP_022943153.1 uncharacterized protein LOC111447969 [Cucurbita moschata]) HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07 Identity = 38/59 (64.41%), Postives = 40/59 (67.80%), Query Frame = 0
BLAST of Carg00028 vs. NCBI nr
Match: XP_022929341.1 (uncharacterized protein LOC111435944 [Cucurbita moschata] >XP_023551825.1 uncharacterized protein LOC111809676 isoform X3 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 64.7 bits (156), Expect = 3.8e-07 Identity = 38/59 (64.41%), Postives = 39/59 (66.10%), Query Frame = 0
BLAST of Carg00028 vs. ExPASy TrEMBL
Match: A0A6J1KQV7 (uncharacterized protein LOC111496793 OS=Cucurbita maxima OX=3661 GN=LOC111496793 PE=4 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 3.3e-09 Identity = 40/59 (67.80%), Postives = 41/59 (69.49%), Query Frame = 0
BLAST of Carg00028 vs. ExPASy TrEMBL
Match: A0A6J1FS83 (uncharacterized protein LOC111447969 OS=Cucurbita moschata OX=3662 GN=LOC111447969 PE=4 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 8.2e-08 Identity = 38/59 (64.41%), Postives = 40/59 (67.80%), Query Frame = 0
BLAST of Carg00028 vs. ExPASy TrEMBL
Match: A0A6J1EMV3 (uncharacterized protein LOC111435944 OS=Cucurbita moschata OX=3662 GN=LOC111435944 PE=4 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 1.8e-07 Identity = 38/59 (64.41%), Postives = 39/59 (66.10%), Query Frame = 0
BLAST of Carg00028 vs. ExPASy TrEMBL
Match: A0A6J1CPB9 (uncharacterized protein LOC111012874 OS=Momordica charantia OX=3673 GN=LOC111012874 PE=4 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 4.1e-07 Identity = 37/59 (62.71%), Postives = 39/59 (66.10%), Query Frame = 0
BLAST of Carg00028 vs. ExPASy TrEMBL
Match: A0A0A0L386 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G104860 PE=4 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 4.1e-07 Identity = 37/61 (60.66%), Postives = 40/61 (65.57%), Query Frame = 0
BLAST of Carg00028 vs. TAIR 10
Match: AT3G15395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 45.1 bits (105), Expect = 2.9e-05 Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 0
BLAST of Carg00028 vs. TAIR 10
Match: AT3G15395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 45.1 bits (105), Expect = 2.9e-05 Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 0
BLAST of Carg00028 vs. TAIR 10
Match: AT3G15395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 45.1 bits (105), Expect = 2.9e-05 Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 0
BLAST of Carg00028 vs. TAIR 10
Match: AT3G15395.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 31 Blast hits to 31 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 45.1 bits (105), Expect = 2.9e-05 Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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