Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGATACCTACTCCAAGATCGAAGCCGCCTGCAAATTGAAATCAAGATCTGTAGATTACTCCGATCTTTCATCGCTCCCTCACTCTCTTAGATTCGCCGCTGCCGACTCCAATCCGAACTCTCGCGATTCCGATCAAAACAGGACGAATCGGTCGCGGGAGCCGCCGCATGGTTGCTTGCCAGAGGAGGAAGAAGACGAATACCGCAGCGCTGCAACCGCTACTGCCTCTACGCTGAGACGGAACTGCTCTGTTTCTGCATCGGCCTCCGGATTCCACTCAGCAGTGAAGAGAGCTCTGTCGATGCGACGATCTTCGTCTGTGGCGGAGCGGTACAGTAGGATTCACGATCAGTTCGGGACGCTTGCATCGCCGATCGACGACGATGAAATCGAAGGCGAAGAATCGAAGGAAGGCCGAAATGCAGGAGGATCTGTAAGGAAGAAGAAGACGAACGCGGCTGGGAAGATCGTTAGAGCTTGTAAGCGACTTTTTGGACTGTAG
mRNA sequence
ATGGCCGATACCTACTCCAAGATCGAAGCCGCCTGCAAATTGAAATCAAGATCTGTAGATTACTCCGATCTTTCATCGCTCCCTCACTCTCTTAGATTCGCCGCTGCCGACTCCAATCCGAACTCTCGCGATTCCGATCAAAACAGGACGAATCGGTCGCGGGAGCCGCCGCATGGTTGCTTGCCAGAGGAGGAAGAAGACGAATACCGCAGCGCTGCAACCGCTACTGCCTCTACGCTGAGACGGAACTGCTCTGTTTCTGCATCGGCCTCCGGATTCCACTCAGCAGTGAAGAGAGCTCTGTCGATGCGACGATCTTCGTCTGTGGCGGAGCGGTACAGTAGGATTCACGATCAGTTCGGGACGCTTGCATCGCCGATCGACGACGATGAAATCGAAGGCGAAGAATCGAAGGAAGGCCGAAATGCAGGAGGATCTGTAAGGAAGAAGAAGACGAACGCGGCTGGGAAGATCGTTAGAGCTTGTAAGCGACTTTTTGGACTGTAG
Coding sequence (CDS)
ATGGCCGATACCTACTCCAAGATCGAAGCCGCCTGCAAATTGAAATCAAGATCTGTAGATTACTCCGATCTTTCATCGCTCCCTCACTCTCTTAGATTCGCCGCTGCCGACTCCAATCCGAACTCTCGCGATTCCGATCAAAACAGGACGAATCGGTCGCGGGAGCCGCCGCATGGTTGCTTGCCAGAGGAGGAAGAAGACGAATACCGCAGCGCTGCAACCGCTACTGCCTCTACGCTGAGACGGAACTGCTCTGTTTCTGCATCGGCCTCCGGATTCCACTCAGCAGTGAAGAGAGCTCTGTCGATGCGACGATCTTCGTCTGTGGCGGAGCGGTACAGTAGGATTCACGATCAGTTCGGGACGCTTGCATCGCCGATCGACGACGATGAAATCGAAGGCGAAGAATCGAAGGAAGGCCGAAATGCAGGAGGATCTGTAAGGAAGAAGAAGACGAACGCGGCTGGGAAGATCGTTAGAGCTTGTAAGCGACTTTTTGGACTGTAG
Protein sequence
MADTYSKIEAACKLKSRSVDYSDLSSLPHSLRFAAADSNPNSRDSDQNRTNRSREPPHGCLPEEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRIHDQFGTLASPIDDDEIEGEESKEGRNAGGSVRKKKTNAAGKIVRACKRLFGL
Homology
BLAST of Carg00013 vs. NCBI nr
Match:
KAG7031359.1 (hypothetical protein SDJN02_05399, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 315.8 bits (808), Expect = 2.2e-82
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
Query: 1 MADTYSKIEAACKLKSRSVDYSDLSSLPHSLRFAAADSNPNSRDSDQNRTNRSREPPHGC 60
MADTYSKIEAACKLKSRSVDYSDLSSLPHSLRFAAADSNPNSRDSDQNRTNRSREPPHGC
Sbjct: 1 MADTYSKIEAACKLKSRSVDYSDLSSLPHSLRFAAADSNPNSRDSDQNRTNRSREPPHGC 60
Query: 61 LPEEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRIHDQF 120
LPEEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRIHDQF
Sbjct: 61 LPEEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRIHDQF 120
Query: 121 GTLASPIDDDEIEGEESKEGRNAGGSVRKKKTNAAGKIVRACKRLFGL 169
GTLASPIDDDEIEGEESKEGRNAGGSVRKKKTNAAGKIVRACKRLFGL
Sbjct: 121 GTLASPIDDDEIEGEESKEGRNAGGSVRKKKTNAAGKIVRACKRLFGL 168
BLAST of Carg00013 vs. NCBI nr
Match:
KAG6600720.1 (hypothetical protein SDJN03_05953, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 299.3 bits (765), Expect = 2.1e-77
Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 0
Query: 1 MADTYSKIEAACKLKSRSVDYSDLSSLPHSLRFAAADSNPNSRDSDQNRTNRSREPPHGC 60
MADTYSKIEAACKLKSRS DYSDLSSLPHSLRFAAADSNPNSRDSDQNRTNRSREPPHGC
Sbjct: 1 MADTYSKIEAACKLKSRSADYSDLSSLPHSLRFAAADSNPNSRDSDQNRTNRSREPPHGC 60
Query: 61 LPEEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRIHDQF 120
LPEEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRIHDQF
Sbjct: 61 LPEEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRIHDQF 120
Query: 121 GTLASPIDDDEIEGEESKEGRNAGGSVRKKKTNAAGKIVRA 162
GTLASPIDDDEIEGEESKEGRNAGGSVRKKKTNAAGKIVRA
Sbjct: 121 GTLASPIDDDEIEGEESKEGRNAGGSVRKKKTNAAGKIVRA 161
BLAST of Carg00013 vs. NCBI nr
Match:
XP_022136741.1 (uncharacterized protein LOC111008371 [Momordica charantia])
HSP 1 Score: 217.6 bits (553), Expect = 8.0e-53
Identity = 123/170 (72.35%), Postives = 135/170 (79.41%), Query Frame = 0
Query: 1 MADTYSKIEAACKLKSRSVDYSDLSSLPHSLRFAAADSNPNS--RDSDQNRTNRSREPPH 60
MAD YSKI+AACK KSRS+DYSDL+SLPHSL+F AA NPNS +SDQNR NR+R
Sbjct: 1 MADGYSKIKAACKFKSRSIDYSDLASLPHSLKFTAAVPNPNSLAHESDQNRANRAR--AQ 60
Query: 61 GCLPEEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRIHD 120
CLPEEEEDEY + L RN SVS+SASG HSAVKRALSMRRSSSVAERY RIHD
Sbjct: 61 SCLPEEEEDEYGGGGGVAVAALSRNSSVSSSASGLHSAVKRALSMRRSSSVAERYCRIHD 120
Query: 121 QFGTLASPIDDDEIEGEESKEGRNAGGSVRKKKTNAAGKIVRACKRLFGL 169
QF TLASPIDD+EI +SKE R + GSVR+KK NAAGKIVRACKRLFGL
Sbjct: 121 QFATLASPIDDEEIGAGDSKESRKSAGSVRRKKKNAAGKIVRACKRLFGL 168
BLAST of Carg00013 vs. NCBI nr
Match:
KAG7015455.1 (hypothetical protein SDJN02_23091, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 209.5 bits (532), Expect = 2.2e-50
Identity = 125/176 (71.02%), Postives = 140/176 (79.55%), Query Frame = 0
Query: 1 MADTYSKIEAACKLKSRSVDYSDLSSLPHSLRF--AAADSNPNSRDSDQNRTNR--SREP 60
MAD+YSKI+AACK KSRS+DYSDL+SLPHS RF AAA SNPNS DS++N+TNR SR P
Sbjct: 1 MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNRQHSRLP 60
Query: 61 PHGCLPEEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRI 120
EEEEDEY +A A+ L RN SVS+S SGFHSAVKRALSMRRSSSVAERY RI
Sbjct: 61 EEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAERYCRI 120
Query: 121 HDQFGTLASPIDDDEIEGEESKEGRNAGGSV----RKKKTNAAGKIVRACKRLFGL 169
HDQF TLASPIDDDE+E +SKE R GGSV +KKK N+AGKIVRACKRLFG+
Sbjct: 121 HDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAGKIVRACKRLFGI 176
BLAST of Carg00013 vs. NCBI nr
Match:
XP_022929198.1 (uncharacterized protein LOC111435863 [Cucurbita moschata] >KAG6577366.1 hypothetical protein SDJN03_24940, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 206.5 bits (524), Expect = 1.9e-49
Identity = 124/176 (70.45%), Postives = 139/176 (78.98%), Query Frame = 0
Query: 1 MADTYSKIEAACKLKSRSVDYSDLSSLPHSLRF--AAADSNPNSRDSDQNRTNR--SREP 60
MAD+YSKI+AACK KSRS+DYSDL+SLPHS RF AAA SNPNS DS++N+TNR SR P
Sbjct: 1 MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNRQHSRLP 60
Query: 61 PHGCLPEEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRI 120
EEEEDEY +A A+ L RN SVS+S SGFHSAVKRALSMRRSSSVAERY RI
Sbjct: 61 EEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAERYCRI 120
Query: 121 HDQFGTLASPIDDDEIEGEESKEGRNAGGSV----RKKKTNAAGKIVRACKRLFGL 169
HDQF TLASPIDDDE+E +SKE R GGSV +KKK N+A KIVRACKRLFG+
Sbjct: 121 HDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAEKIVRACKRLFGI 176
BLAST of Carg00013 vs. ExPASy TrEMBL
Match:
A0A6J1C4C9 (uncharacterized protein LOC111008371 OS=Momordica charantia OX=3673 GN=LOC111008371 PE=4 SV=1)
HSP 1 Score: 217.6 bits (553), Expect = 3.9e-53
Identity = 123/170 (72.35%), Postives = 135/170 (79.41%), Query Frame = 0
Query: 1 MADTYSKIEAACKLKSRSVDYSDLSSLPHSLRFAAADSNPNS--RDSDQNRTNRSREPPH 60
MAD YSKI+AACK KSRS+DYSDL+SLPHSL+F AA NPNS +SDQNR NR+R
Sbjct: 1 MADGYSKIKAACKFKSRSIDYSDLASLPHSLKFTAAVPNPNSLAHESDQNRANRAR--AQ 60
Query: 61 GCLPEEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRIHD 120
CLPEEEEDEY + L RN SVS+SASG HSAVKRALSMRRSSSVAERY RIHD
Sbjct: 61 SCLPEEEEDEYGGGGGVAVAALSRNSSVSSSASGLHSAVKRALSMRRSSSVAERYCRIHD 120
Query: 121 QFGTLASPIDDDEIEGEESKEGRNAGGSVRKKKTNAAGKIVRACKRLFGL 169
QF TLASPIDD+EI +SKE R + GSVR+KK NAAGKIVRACKRLFGL
Sbjct: 121 QFATLASPIDDEEIGAGDSKESRKSAGSVRRKKKNAAGKIVRACKRLFGL 168
BLAST of Carg00013 vs. ExPASy TrEMBL
Match:
A0A6J1ERE9 (uncharacterized protein LOC111435863 OS=Cucurbita moschata OX=3662 GN=LOC111435863 PE=4 SV=1)
HSP 1 Score: 206.5 bits (524), Expect = 9.0e-50
Identity = 124/176 (70.45%), Postives = 139/176 (78.98%), Query Frame = 0
Query: 1 MADTYSKIEAACKLKSRSVDYSDLSSLPHSLRF--AAADSNPNSRDSDQNRTNR--SREP 60
MAD+YSKI+AACK KSRS+DYSDL+SLPHS RF AAA SNPNS DS++N+TNR SR P
Sbjct: 1 MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNRQHSRLP 60
Query: 61 PHGCLPEEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRI 120
EEEEDEY +A A+ L RN SVS+S SGFHSAVKRALSMRRSSSVAERY RI
Sbjct: 61 EEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAERYCRI 120
Query: 121 HDQFGTLASPIDDDEIEGEESKEGRNAGGSV----RKKKTNAAGKIVRACKRLFGL 169
HDQF TLASPIDDDE+E +SKE R GGSV +KKK N+A KIVRACKRLFG+
Sbjct: 121 HDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAEKIVRACKRLFGI 176
BLAST of Carg00013 vs. ExPASy TrEMBL
Match:
A0A0A0L2N9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110030 PE=4 SV=1)
HSP 1 Score: 191.8 bits (486), Expect = 2.3e-45
Identity = 117/177 (66.10%), Postives = 131/177 (74.01%), Query Frame = 0
Query: 1 MADTYSKIEAACKLKSRSVDYSDLSSLPHSLRFAAADSNPNSRDSDQNRTNRSREPPHGC 60
MAD YSKI+AA K KSRS+DYSDLSSLPHSL F+AA SNP RTNR +EPPHG
Sbjct: 1 MADGYSKIKAASKFKSRSIDYSDLSSLPHSLTFSAAVSNP-------TRTNRPQEPPHGR 60
Query: 61 LPEEEED------EYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYS 120
LPEE+E+ + AT A+TL RN SVS+S SGF SAVKRALSMRRSSSVAERY
Sbjct: 61 LPEEDEEVNDDECDRPRGATTAAATLCRNSSVSSSVSGFQSAVKRALSMRRSSSVAERYC 120
Query: 121 RIHDQFGTLASPIDDDEIEGEESKEGRNAGGS---VRKKKTNAAGKIVRACKRLFGL 169
RIHDQF T ASPI+DDE+EG + KE GGS +KKK NAA KIVRACKR+FGL
Sbjct: 121 RIHDQFATFASPIEDDEMEGGDWKERGKIGGSEIRKKKKKKNAAEKIVRACKRIFGL 170
BLAST of Carg00013 vs. ExPASy TrEMBL
Match:
A0A5A7V402 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00790 PE=4 SV=1)
HSP 1 Score: 187.6 bits (475), Expect = 4.3e-44
Identity = 117/171 (68.42%), Postives = 130/171 (76.02%), Query Frame = 0
Query: 1 MADTYSKIEAACKLKSRSVDYSDLSSLPHSLRF-AAADSNPNSRDSDQNRTNRSREPPHG 60
MAD YSKI+AACK KSRS+DYSDLSSLPHSL F AA SNP S S+ +RTNR +EPPH
Sbjct: 1 MADGYSKIKAACKFKSRSIDYSDLSSLPHSLTFNNAAVSNPISHHSNHSRTNRPQEPPHR 60
Query: 61 CLPEEEE----DEY-RSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYS 120
LPEE+E DE R A+TL RN SVS+S SGF SAVKRALSMRRSSSVAERY
Sbjct: 61 RLPEEDEEVNDDECDRPRGGTAAATLSRNSSVSSSVSGFQSAVKRALSMRRSSSVAERYC 120
Query: 121 RIHDQFGTLASPIDDDEIEGEESKEGRNAGGSV--RKKKTNAAGKIVRACK 164
RIHDQF T ASPI+DDE+EG +SKE GGS +KKKTNAAGKIVRA +
Sbjct: 121 RIHDQFATFASPIEDDELEGGDSKERGKLGGSAIKKKKKTNAAGKIVRALR 171
BLAST of Carg00013 vs. ExPASy TrEMBL
Match:
A0A5N6QLE4 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004482 PE=4 SV=1)
HSP 1 Score: 99.8 bits (247), Expect = 1.2e-17
Identity = 76/164 (46.34%), Postives = 102/164 (62.20%), Query Frame = 0
Query: 5 YSKIEAACKLKSRSVDYSDLSSLPHSLRFAAADSNPNSRDSDQNRTNRSREPPHGCLPEE 64
YSK++A KSRS+D+SD S + + +S+P S+ + ++ S E
Sbjct: 4 YSKMKAIDTQKSRSMDFSDALSFSQTKK---TNSDPTSKPHEGSQIKESN--------AE 63
Query: 65 EEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRIHDQFGTLA 124
+ED + L R+CSVS S SGF SAVKRA S++RSSSV+ERY RI+DQ TLA
Sbjct: 64 KEDGDGGNGEKFGAVLSRSCSVS-STSGFQSAVKRAFSVKRSSSVSERYCRIYDQSVTLA 123
Query: 125 SPIDDDEIEGEESKEGRNAGGSVRKKKTNAAGKIVRACKRLFGL 169
SPIDDD+ EG ++ R SV+KKK + GKI++ACKRLFGL
Sbjct: 124 SPIDDDDDEGWDTM--RATRRSVKKKK-HKGGKILKACKRLFGL 152
BLAST of Carg00013 vs. TAIR 10
Match:
AT4G24275.1 (Identified as a screen for stress-responsive genes. )
HSP 1 Score: 54.3 bits (129), Expect = 1.1e-07
Identity = 51/130 (39.23%), Postives = 72/130 (55.38%), Query Frame = 0
Query: 45 SDQNRTNRSREPPHGCL-PEEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSM 104
S + T++ EP H + P+ ++ + A L RN SVSASA S +K +SM
Sbjct: 5 SKMDSTDQKLEPDHPVVDPQIQKPDLEPA--EMKPKLSRNRSVSASAQAVPSPIK--MSM 64
Query: 105 RRSSSVAERYSRIHDQFGTLASPI---DDDEIEGEESKEGRNAGGSVRKKKTNAAGK--I 164
RRSSSV+ERY RI+DQ P+ + DE E ++ KE + +KKK+N K
Sbjct: 65 RRSSSVSERYCRIYDQSSATTWPLPFHEGDEDEDDDDKEKVH-----KKKKSNNFKKKAF 124
Query: 165 VRACKRLFGL 169
V+ACKR FG+
Sbjct: 125 VKACKRFFGI 125
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7031359.1 | 2.2e-82 | 100.00 | hypothetical protein SDJN02_05399, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6600720.1 | 2.1e-77 | 99.38 | hypothetical protein SDJN03_05953, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022136741.1 | 8.0e-53 | 72.35 | uncharacterized protein LOC111008371 [Momordica charantia] | [more] |
KAG7015455.1 | 2.2e-50 | 71.02 | hypothetical protein SDJN02_23091, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_022929198.1 | 1.9e-49 | 70.45 | uncharacterized protein LOC111435863 [Cucurbita moschata] >KAG6577366.1 hypothet... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1C4C9 | 3.9e-53 | 72.35 | uncharacterized protein LOC111008371 OS=Momordica charantia OX=3673 GN=LOC111008... | [more] |
A0A6J1ERE9 | 9.0e-50 | 70.45 | uncharacterized protein LOC111435863 OS=Cucurbita moschata OX=3662 GN=LOC1114358... | [more] |
A0A0A0L2N9 | 2.3e-45 | 66.10 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110030 PE=4 SV=1 | [more] |
A0A5A7V402 | 4.3e-44 | 68.42 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5N6QLE4 | 1.2e-17 | 46.34 | Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004482 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT4G24275.1 | 1.1e-07 | 39.23 | Identified as a screen for stress-responsive genes. | [more] |