CaUC11G214270 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC11G214270
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr11: 27581707 .. 27581916 (-)
RNA-Seq ExpressionCaUC11G214270
SyntenyCaUC11G214270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGAAAATCTCGAGATCACGACGAGAATCAAACACAATTCGATGAATCGAAACAGGTTAGCGATTTTCCTGAGCTGTCGATACTTGAGAATCGCGTTCGCTTTCTCCGCTCTTATGTCGTAGAAATTGACGGACTCCATTTACAGAAAGAAAACAAAATCAATTCAGTGAAAACCACAGCAGAATTTACAAAATCGATCTCGTAA

mRNA sequence

ATGGCTGGAAAATCTCGAGATCACGACGAGAATCAAACACAATTCGATGAATCGAAACAGGTTAGCGATTTTCCTGAGCTGTCGATACTTGAGAATCGCGTTCGCTTTCTCCGCTCTTATGTCGTAGAAATTGACGGACTCCATTTACAGAAAGAAAACAAAATCAATTCAGTGAAAACCACAGCAGAATTTACAAAATCGATCTCGTAA

Coding sequence (CDS)

ATGGCTGGAAAATCTCGAGATCACGACGAGAATCAAACACAATTCGATGAATCGAAACAGGTTAGCGATTTTCCTGAGCTGTCGATACTTGAGAATCGCGTTCGCTTTCTCCGCTCTTATGTCGTAGAAATTGACGGACTCCATTTACAGAAAGAAAACAAAATCAATTCAGTGAAAACCACAGCAGAATTTACAAAATCGATCTCGTAA

Protein sequence

MAGKSRDHDENQTQFDESKQVSDFPELSILENRVRFLRSYVVEIDGLHLQKENKINSVKTTAEFTKSIS
Homology
The following BLAST results are available for this feature:
BLAST of CaUC11G214270 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC11G214270 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC11G214270 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC11G214270 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC11G214270.1CaUC11G214270.1mRNA