CaUC11G213560 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC11G213560
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Protein of unknown function (DUF3317)
Location	Ciama_Chr11: 26756410 .. 26757794 (-)
RNA-Seq Expression	CaUC11G213560
Synteny	CaUC11G213560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATAATACCGCAGACTAATGTTTAATTACTTTCCATTCTTCTCTTCGAAAGGGAGGAGCTTTTTGTATCTCTGAAGCTTCAAGGCAGGGCTCTCGAATCAAGCCTTCCTCAAATTTCATCTCTATCCGTTGCATGAAAGGTGAGACGAATTAGGTCACAGAGAGAGCTTCAATTTCATAATTTCTCGTTAAGCTTCATCTTTGGTCTTTCTAATCTCTCTGGAATTCATCATTTCCTGCTTCATTCCTCCTCCCTTTCAAGCAAAACCGAGTATTTCTCCTTTCTATAATGACTTCTGCAGCAAACACTCATTTTTTCGATTCCTTTTCCTTCAATGGAAAATGGGTTTTGTCTTTTTCTTTTCGAACATTTATGGAACCGTTTCTGTTTGAGCAATTAGTTTTCGTGTTTATGGGTTTTTAGATCTGTGCTTCCTTTTAGAATTTGACTTTGAAGGAATCCGAAAATACTCCCCCCCACCCCCCCCGGGGGTGAAAATTTGTGATAGAGAAGTTTGGCAGTGAAATATGGTATCCGAGTGATCTAGTACTTATGTTCAACGGCCAATTATACGGGCCTTCGTGATTAATAAACACATTACTTTTTGAAGTTTGAAGTTTGATTGTGCATTACGTTTTCGAAGTTTGATTGTGAAACTGCTATAACTTCTTGTTTTATCATCCGTTGCCCCATACTTCCATGACCTGAAATTTTAGATTGATTTTGACTTGGGTGGTTGCTTCTTGCTTGTAGGTTTTCTATAGCCATGAATTGGATTCAAAGGAAGATCTACCTTTACAATGTCACATTTGGGCTGTACATGTTGGATTGGTGGGAGCGGATCCTCTTCAGTAAGCTCTCTAACTTAAGGGATCTCTGATCTGTTTTATCATTTACAAGCATGCATCGTATCCATTTAGTTTTATGATTCGGATTGAAGTAATGCTACCAGTGTCATTGTCCAGGCAAATAACTTTTGATATTTACTGTTTTTTTTGGGGGGGTTAAGATTTGATATTGATTTTCCACTATTCGAAGTTATGTCCTGCCATGTGAATTTGGTTGTCAAGTGTTTATATGTTATCTAATTTTTAATCATGCTTGTTAGGTGTGTCTGTGTCTTATGTTAACTGTATTAGGAAGTTGAATTTTCATTGGTTCAATTATTACTGTGAGATTGAATTTAGTTCGTGAAATTCTTACTTTTTGTTCTTACAATTGATCTCTTGAATTCTTCACATATTATTGTAGATACAATGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGATCGCGATATGTAAATGATTTGTGCAAGAGGTATTGTGTTACCTTGACTCTACCATTTCCTTTTCAGGATTGGAAAACAAAATATTTATGA

mRNA sequence

GATAATACCGCAGACTAATGTTTAATTACTTTCCATTCTTCTCTTCGAAAGGGAGGAGCTTTTTGTATCTCTGAAGCTTCAAGGCAGGGCTCTCGAATCAAGCCTTCCTCAAATTTCATCTCTATCCGTTGCATGAAAGGTTTTCTATAGCCATGAATTGGATTCAAAGGAAGATCTACCTTTACAATGTCACATTTGGGCTGTACATGTTGGATTGGTGGGAGCGGATCCTCTTCAGTGTGTCTGTGTCTTATGTTAACTGTATTAGGAAGTTGAATTTTCATTGGTTCAATTATTACTATACAATGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGATCGCGATATGTAAATGATTTGTGCAAGAGGTATTGTGTTACCTTGACTCTACCATTTCCTTTTCAGGATTGGAAAACAAAATATTTATGA

Coding sequence (CDS)

ATGAATTGGATTCAAAGGAAGATCTACCTTTACAATGTCACATTTGGGCTGTACATGTTGGATTGGTGGGAGCGGATCCTCTTCAGTGTGTCTGTGTCTTATGTTAACTGTATTAGGAAGTTGAATTTTCATTGGTTCAATTATTACTATACAATGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGATCGCGATATGTAAATGATTTGTGCAAGAGGTATTGTGTTACCTTGACTCTACCATTTCCTTTTCAGGATTGGAAAACAAAATATTTATGA

Protein sequence

MNWIQRKIYLYNVTFGLYMLDWWERILFSVSVSYVNCIRKLNFHWFNYYYTMVVVLMWFMFYNGSRYVNDLCKRYCVTLTLPFPFQDWKTKYL

Homology

[Close]

BLAST of CaUC11G213560 vs. NCBI nr
Match: KAG7016096.1 (hypothetical protein SDJN02_21200, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-19
Identity = 54/83 (65.06%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVSVSYVNCIRKLNFHWFNYYYTMVVVLMWFM 60
          MNWIQRK+YLYNVTFGLYMLDWWERILF+                     T+VVVLMWFM
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFN---------------------TLVVVLMWFM 60

Query: 61 FYNGSRYVNDLCKRYCVTLTLPF 84
          FYNGSRYVNDL KRYCV L   F
Sbjct: 61 FYNGSRYVNDLYKRYCVYLCSTF 62

[Close]

BLAST of CaUC11G213560 vs. NCBI nr
Match: XP_004141475.1 (uncharacterized protein LOC101207494 [Cucumis sativus] >KAE8648948.1 hypothetical protein Csa_008788 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 4.2e-19
Identity = 52/75 (69.33%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVSVSYVNCIRKLNFHWFNYYYTMVVVLMWFM 60
          MNWIQRKIYLYNVTFGLYMLDWWERILF+                     TMVVVLMWFM
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFN---------------------TMVVVLMWFM 54

Query: 61 FYNGSRYVNDLCKRY 76
          FYNGSRYVND+CKRY
Sbjct: 61 FYNGSRYVNDMCKRY 54

[Close]

BLAST of CaUC11G213560 vs. NCBI nr
Match: XP_008459402.1 (PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo] >XP_008459403.1 PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo] >XP_016902393.1 PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 4.2e-19
Identity = 52/75 (69.33%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVSVSYVNCIRKLNFHWFNYYYTMVVVLMWFM 60
          MNWIQRKIYLYNVTFGLYMLDWWERILF+                     TMVVVLMWFM
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFN---------------------TMVVVLMWFM 54

Query: 61 FYNGSRYVNDLCKRY 76
          FYNGSRYVND+CKRY
Sbjct: 61 FYNGSRYVNDMCKRY 54

[Close]

BLAST of CaUC11G213560 vs. NCBI nr
Match: XP_038889912.1 (uncharacterized protein LOC120079682 [Benincasa hispida])

HSP 1 Score: 102.4 bits (254), Expect = 2.1e-18
Identity = 51/75 (68.00%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVSVSYVNCIRKLNFHWFNYYYTMVVVLMWFM 60
          MNWIQRKIYLYNVTFGLYMLDWWERILF+                     T+VVVLMWFM
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFN---------------------TLVVVLMWFM 54

Query: 61 FYNGSRYVNDLCKRY 76
          FYNGSRYVNDLCKR+
Sbjct: 61 FYNGSRYVNDLCKRH 54

[Close]

BLAST of CaUC11G213560 vs. NCBI nr
Match: XP_022134536.1 (uncharacterized protein LOC111006754 [Momordica charantia])

HSP 1 Score: 100.5 bits (249), Expect = 7.9e-18
Identity = 50/74 (67.57%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVSVSYVNCIRKLNFHWFNYYYTMVVVLMWFM 60
          MNWIQRKIYLYNVTFGLYMLDWWERILF+                     T+VVVLMWFM
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFN---------------------TLVVVLMWFM 53

Query: 61 FYNGSRYVNDLCKR 75
          FYNGS+YVNDLCKR
Sbjct: 61 FYNGSQYVNDLCKR 53

[Close]

BLAST of CaUC11G213560 vs. ExPASy TrEMBL
Match: A0A1S3C9L1 (uncharacterized protein LOC103498548 OS=Cucumis melo OX=3656 GN=LOC103498548 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.0e-19
Identity = 52/75 (69.33%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVSVSYVNCIRKLNFHWFNYYYTMVVVLMWFM 60
          MNWIQRKIYLYNVTFGLYMLDWWERILF+                     TMVVVLMWFM
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFN---------------------TMVVVLMWFM 54

Query: 61 FYNGSRYVNDLCKRY 76
          FYNGSRYVND+CKRY
Sbjct: 61 FYNGSRYVNDMCKRY 54

[Close]

BLAST of CaUC11G213560 vs. ExPASy TrEMBL
Match: A0A6J1BY20 (uncharacterized protein LOC111006754 OS=Momordica charantia OX=3673 GN=LOC111006754 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.8e-18
Identity = 50/74 (67.57%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVSVSYVNCIRKLNFHWFNYYYTMVVVLMWFM 60
          MNWIQRKIYLYNVTFGLYMLDWWERILF+                     T+VVVLMWFM
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFN---------------------TLVVVLMWFM 53

Query: 61 FYNGSRYVNDLCKR 75
          FYNGS+YVNDLCKR
Sbjct: 61 FYNGSQYVNDLCKR 53

[Close]

BLAST of CaUC11G213560 vs. ExPASy TrEMBL
Match: A0A6J1JYU1 (uncharacterized protein LOC111489112 OS=Cucurbita maxima OX=3661 GN=LOC111489112 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.5e-17
Identity = 49/75 (65.33%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVSVSYVNCIRKLNFHWFNYYYTMVVVLMWFM 60
          MNWIQRK+YLYNVTFGLYMLDWWERILF+                     T+VVVLMWFM
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFN---------------------TLVVVLMWFM 54

Query: 61 FYNGSRYVNDLCKRY 76
          FYNGSRYVNDL KR+
Sbjct: 61 FYNGSRYVNDLYKRH 54

[Close]

BLAST of CaUC11G213560 vs. ExPASy TrEMBL
Match: A0A6J1FLX2 (uncharacterized protein LOC111445419 OS=Cucurbita moschata OX=3662 GN=LOC111445419 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.5e-17
Identity = 49/75 (65.33%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVSVSYVNCIRKLNFHWFNYYYTMVVVLMWFM 60
          MNWIQRK+YLYNVTFGLYMLDWWERILF+                     T+VVVLMWFM
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFN---------------------TLVVVLMWFM 54

Query: 61 FYNGSRYVNDLCKRY 76
          FYNGSRYVNDL KR+
Sbjct: 61 FYNGSRYVNDLYKRH 54

[Close]

BLAST of CaUC11G213560 vs. ExPASy TrEMBL
Match: A0A2K2BQ13 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G263300 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.5e-17
Identity = 45/82 (54.88%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVSVSYVNCIRKLNFHWFNYYYTMVVVLMWFM 60
          MNW+QRKIYLYNVTFGL+MLDWWER LF++                     +V+VLMWF+
Sbjct: 1  MNWVQRKIYLYNVTFGLFMLDWWERCLFNI---------------------LVIVLMWFI 60

Query: 61 FYNGSRYVNDLCKRYCVTLTLP 83
          FYNGSRYV D CKRY  ++  P
Sbjct: 61 FYNGSRYVTDFCKRYVASILSP 61

[Close]

BLAST of CaUC11G213560 vs. TAIR 10
Match: AT2G30942.1 (Protein of unknown function (DUF3317) )

HSP 1 Score: 87.8 bits (216), Expect = 5.0e-18
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVSVSYVNCIRKLNFHWFNYYYTMVVVLMWFM 60
          MNW+QRKIYLYNVTFGLYMLDWWER LF+                     ++V++LMWF+
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFN---------------------SLVLILMWFI 54

Query: 61 FYNGSRYVNDLCKRY 76
           YNGSRY ++LCKR+
Sbjct: 61 LYNGSRYFSELCKRH 54

[Close]

BLAST of CaUC11G213560 vs. TAIR 10
Match: AT1G06515.1 (Protein of unknown function (DUF3317) )

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-16
Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVSVSYVNCIRKLNFHWFNYYYTMVVVLMWFM 60
          MNW+QRKIYLYNVTFGLYMLDWWER LF+                     ++VVVLMWF+
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFN---------------------SLVVVLMWFV 54

Query: 61 FYNGSRYVNDLCKRY 76
           YNG+RY ++L +R+
Sbjct: 61 LYNGTRYFSELFQRH 54

[Close]

BLAST of CaUC11G213560 vs. TAIR 10
Match: AT1G06515.2 (Protein of unknown function (DUF3317) )

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-16
Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVSVSYVNCIRKLNFHWFNYYYTMVVVLMWFM 60
          MNW+QRKIYLYNVTFGLYMLDWWER LF+                     ++VVVLMWF+
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFN---------------------SLVVVLMWFV 54

Query: 61 FYNGSRYVNDLCKRY 76
           YNG+RY ++L +R+
Sbjct: 61 LYNGTRYFSELFQRH 54

The following BLAST results are available for this feature:

BLAST of CaUC11G213560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016096.1	1.1e-19	65.06	hypothetical protein SDJN02_21200, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_004141475.1	4.2e-19	69.33	uncharacterized protein LOC101207494 [Cucumis sativus] >KAE8648948.1 hypothetica...	[more]
XP_008459402.1	4.2e-19	69.33	PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo] >XP_008459403.1 P...	[more]
XP_038889912.1	2.1e-18	68.00	uncharacterized protein LOC120079682 [Benincasa hispida]	[more]
XP_022134536.1	7.9e-18	67.57	uncharacterized protein LOC111006754 [Momordica charantia]	[more]

BLAST of CaUC11G213560 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC11G213560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C9L1	2.0e-19	69.33	uncharacterized protein LOC103498548 OS=Cucumis melo OX=3656 GN=LOC103498548 PE=...	[more]
A0A6J1BY20	3.8e-18	67.57	uncharacterized protein LOC111006754 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1JYU1	2.5e-17	65.33	uncharacterized protein LOC111489112 OS=Cucurbita maxima OX=3661 GN=LOC111489112...	[more]
A0A6J1FLX2	2.5e-17	65.33	uncharacterized protein LOC111445419 OS=Cucurbita moschata OX=3662 GN=LOC1114454...	[more]
A0A2K2BQ13	5.5e-17	54.88	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G263300 PE=4 ...	[more]

BLAST of CaUC11G213560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30942.1	5.0e-18	54.67	Protein of unknown function (DUF3317)	[more]
AT1G06515.1	2.1e-16	53.33	Protein of unknown function (DUF3317)	[more]
AT1G06515.2	2.1e-16	53.33	Protein of unknown function (DUF3317)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024512	Small subunit of serine palmitoyltransferase-like	PFAM	PF11779	SPT_ssu-like	coord: 1..73 e-value: 1.9E-20 score: 72.2
None	No IPR available	PANTHER	PTHR33727	OS07G0446900 PROTEIN	coord: 1..31 coord: 45..74
None	No IPR available	PANTHER	PTHR33727:SF16	PROTEIN, PUTATIVE (DUF3317)-RELATED	coord: 1..31 coord: 45..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC11G213560.1	CaUC11G213560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016020	membrane