CaUC11G212340 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC11G212340
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	DNA replication complex GINS protein PSF3-like
Location	Ciama_Chr11: 25277043 .. 25279555 (+)
RNA-Seq Expression	CaUC11G212340
Synteny	CaUC11G212340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGTTATTATGATATTGATGACATTCTAGCAGAGGAAGAGGTCAATATCTTTACTTTTTACCTGATAAAGTCTTATAAACTTGCAATCTCAATATTGAGTCTTTGTGTGCCCTCTTGACAGCTTGTCTCAGTTGTGTTCCAAAAGGCAGTTAATGGAGTTGGAATCGATCCCAGTTCTGAAACAGATTCTGTGAGTTCCAGCGATTAGTAGGAGATATGTTATGGATGCTGAATGACAAACTTATGTTTTCCTATTTGGTGTAATTTCAGGTTGAATCTGGATCCAAAGTAGAGCTACCCTTCTGGCTTGCACAAGAGCTGCATCTTAGACAAGTTGCGGTTATGGGCTTACCTTCCTGTTTTAACCAAAGGTAGCAATAGCCATTACATTCAAGCTCTACAACCAATAATTTCAATAGACCTGTAGTGTTCTAGATTTTTTGGGAGCTTGAGAGAACGAGGATTTTATTTACTATGGCTCCACTTACTCCCTAAAAACTGCCCTGCATAGACACTGAATTTTGATTCTTTTTCCTCTAATTTAAAAATAATGTTATTTATTTGCGATTGTGTTAATTTGTTTTTTCATCTGCTAATTATTTACGAGCATTAACTTCTGAACTGAAATCTGAAGACTACTGGAATTAGCAAGATTTGATGAGGTCATTTTTAAAGTTAATGATGTTATTATTTTTTATTTAATAATTACTCTTATGGCTTGCTCATGAATGACATTACATGGGAGACAAATGATGTTAATGGCCTTACCTTCCAGTTTCATTAATTAAAACGAAAGTAATGGCTATTTCTCCTTGTTCCTGTCCTGATGATCTGTCATGGCCATGAAATTGCAAGCTTTTTAAGATTTAGTTTATAAGAATATCTTTTAGAATGCTCGCACTTGATCCGTAAAAGCTGACGCCGAAAGAAAATCTTTATTTGTTTGTAGTTTTCTTAAACCTTTCTGTGGCTCAATTTTTTTTTTTTTTTTTTTTTTTAATTTCTATGTACTCACTACTTTATCACTTTAGAATTTCATGATTAATGGAATCAGTAAGACTTTGATGATGACATTTATTCTTATATATATATATAAAGATATTTATAGTTGACTAGTGCTCTTGTTCTCTTAATAGAACACGGCTGGAAATTCAGGCTGATGCTGCATTTGTTGATCTACGATCTAGATGCCCATTTTTCTATGAATTTGGATGCAAGATTGCACCTCTGTGAGTATCCTGAGATCCAACTCTTCAGGATGTATCATGAATCATAATTCTCTTATGAGAAGAAAAATTTATATTGCTGCTTTGTCCATTAATTTGATGAAGTCATACTTATGTCCATTGAAATTGAATGTGTTTGTAAGTGCCCTTTCCTTTGAAATACATTCGTACTCTAATAAGCACGACTTGTTTTCACCTTTCCCAGAAGTAGCCTTCTGAAGACATGTCACATGACATTTAACAGATCCATTTTCAAACATAACAATTAGGTTATCTAGCCATAGGACTACTTGTTTACTGCCGTCTAAATGACTTATGAAATGATCTATTTAAACTTGTAAACTAAGCATGCCGGTTGGACATCCTACTAAGGACTAAGGATCTTGCATTTAGGCTTGATAATAAGCTGGCTAGCATGTTGTCATCTCAAGTTTTGCATCTCAATGAATATCAATCTCAATTTCATTCCATTGTAGATGTAGATTGATAAATATGCACAAAGATTTTAAACTATCTTGTAAAAAGTACTTGTTGCCTTGGAGTGCCTGTAGGATGTCTGTTTTGTTGCGGTGTGCTCTGCCAAATTGCTGTTGGGAAGATTTGTTAAGTTTACCCAAATGCACAAGAACACAGTAGATTGATTATACCTCTCGTTTTTCTTTCACATGTCATTTAGTTTTTTTTTAGTACAAAATGTTTTGTATGAGGATTTGAACCTCCAACCTCAAGAGGAGTGTAAGAAAATTAAAGATGAGCTATACTCATGTTGGCTTAAAAGAGGATTGTTCTAACTTCTCATCACAAACTTCATCGTCAGGGTTGGCGATAGAACGATTGGTTCTTGGCTTTTATCGACGTTCAAGAGTAGGTACAAGGAAGTTCTTACCAAGGCTCACACTGCAGTATTTGCTGCAAGTTCTAAATATTTGGCACTTCTGTCAAAAGAAGAAACCAAGAGTGAGATATTTGTTAGATGTTTTGTCTGTCTGTTGTTTCCATATTTAATATTTAATGCTTCTCTTCAAATTCACATCAATATAATCCCTTTTGTGCAGTGTATGAAGCAGCTCAATCCTCTATGACGGCCTTCAAAAAATGGCGAATGGGTGGGCCTAGATTCCAGAAAGCATCCTTTCTAAGCAGGAAGAGGAAGTCATCTGAGTAGGCACTAATTTAATCTTAAATTTATTATATAATATTGTACAAGCCTGCATGCCCCTTCCCGGAAAACTAGTCATTTATTCATAATTTGCTTATAAATATTCCATGATTGTACTTTCAA

mRNA sequence

ATGACAAGTTATTATGATATTGATGACATTCTAGCAGAGGAAGAGCTTGTCTCAGTTGTGTTCCAAAAGGCAGTTAATGGAGTTGGAATCGATCCCAGTTCTGAAACAGATTCTGTTGAATCTGGATCCAAAGTAGAGCTACCCTTCTGGCTTGCACAAGAGCTGCATCTTAGACAAGTTGCGGTTATGGGCTTACCTTCCTGTTTTAACCAAAGAACACGGCTGGAAATTCAGGCTGATGCTGCATTTGTTGATCTACGATCTAGATGCCCATTTTTCTATGAATTTGGATGCAAGATTGCACCTCTGGTTGGCGATAGAACGATTGGTTCTTGGCTTTTATCGACGTTCAAGAGTAGGTACAAGGAAGTTCTTACCAAGGCTCACACTGCAGTATTTGCTGCAAGTTCTAAATATTTGGCACTTCTGTCAAAAGAAGAAACCAAGATGTATGAAGCAGCTCAATCCTCTATGACGGCCTTCAAAAAATGGCGAATGGGTGGGCCTAGATTCCAGAAAGCATCCTTTCTAAGCAGGAAGAGGAAGTCATCTGAGTAGGCACTAATTTAATCTTAAATTTATTATATAATATTGTACAAGCCTGCATGCCCCTTCCCGGAAAACTAGTCATTTATTCATAATTTGCTTATAAATATTCCATGATTGTACTTTCAA

Coding sequence (CDS)

ATGACAAGTTATTATGATATTGATGACATTCTAGCAGAGGAAGAGCTTGTCTCAGTTGTGTTCCAAAAGGCAGTTAATGGAGTTGGAATCGATCCCAGTTCTGAAACAGATTCTGTTGAATCTGGATCCAAAGTAGAGCTACCCTTCTGGCTTGCACAAGAGCTGCATCTTAGACAAGTTGCGGTTATGGGCTTACCTTCCTGTTTTAACCAAAGAACACGGCTGGAAATTCAGGCTGATGCTGCATTTGTTGATCTACGATCTAGATGCCCATTTTTCTATGAATTTGGATGCAAGATTGCACCTCTGGTTGGCGATAGAACGATTGGTTCTTGGCTTTTATCGACGTTCAAGAGTAGGTACAAGGAAGTTCTTACCAAGGCTCACACTGCAGTATTTGCTGCAAGTTCTAAATATTTGGCACTTCTGTCAAAAGAAGAAACCAAGATGTATGAAGCAGCTCAATCCTCTATGACGGCCTTCAAAAAATGGCGAATGGGTGGGCCTAGATTCCAGAAAGCATCCTTTCTAAGCAGGAAGAGGAAGTCATCTGAGTAG

Protein sequence

MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQVAVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRKRKSSE

Homology

[Close]

BLAST of CaUC11G212340 vs. NCBI nr
Match: XP_038885801.1 (DNA replication complex GINS protein PSF3-like [Benincasa hispida] >XP_038885802.1 DNA replication complex GINS protein PSF3-like [Benincasa hispida])

HSP 1 Score: 357.1 bits (915), Expect = 9.4e-95
Identity = 181/185 (97.84%), Postives = 182/185 (98.38%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           MTSYYD+DDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV
Sbjct: 5   MTSYYDLDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 64

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 120
           AVM LPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGSWLLSTFKSR
Sbjct: 65  AVMALPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 124

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKEVLTKAHTAVFAASSKYL LLS EETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK
Sbjct: 125 YKEVLTKAHTAVFAASSKYLTLLSNEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 184

Query: 181 RKSSE 186
           RKSSE
Sbjct: 185 RKSSE 189

[Close]

BLAST of CaUC11G212340 vs. NCBI nr
Match: XP_008441464.1 (PREDICTED: DNA replication complex GINS protein PSF3-like [Cucumis melo] >XP_008441465.1 PREDICTED: DNA replication complex GINS protein PSF3-like [Cucumis melo])

HSP 1 Score: 354.4 bits (908), Expect = 6.1e-94
Identity = 180/185 (97.30%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV
Sbjct: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 120
           AVM LPSCFNQRTRLEIQADAAFVDLRSRC FFYEFGCKIAPLVGDRTIGSWLLSTFKSR
Sbjct: 61  AVMALPSCFNQRTRLEIQADAAFVDLRSRCQFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 120

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKEVLTKAH+AVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQ+ASFLSRK
Sbjct: 121 YKEVLTKAHSAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQRASFLSRK 180

Query: 181 RKSSE 186
           RKS+E
Sbjct: 181 RKSTE 185

[Close]

BLAST of CaUC11G212340 vs. NCBI nr
Match: KAA0055042.1 (DNA replication complex GINS protein PSF3-like [Cucumis melo var. makuwa] >TYK24435.1 DNA replication complex GINS protein PSF3-like [Cucumis melo var. makuwa])

HSP 1 Score: 354.4 bits (908), Expect = 6.1e-94
Identity = 180/185 (97.30%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV
Sbjct: 23  MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 82

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 120
           AVM LPSCFNQRTRLEIQADAAFVDLRSRC FFYEFGCKIAPLVGDRTIGSWLLSTFKSR
Sbjct: 83  AVMALPSCFNQRTRLEIQADAAFVDLRSRCQFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 142

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKEVLTKAH+AVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQ+ASFLSRK
Sbjct: 143 YKEVLTKAHSAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQRASFLSRK 202

Query: 181 RKSSE 186
           RKS+E
Sbjct: 203 RKSTE 207

[Close]

BLAST of CaUC11G212340 vs. NCBI nr
Match: XP_004138422.1 (DNA replication complex GINS protein PSF3 isoform X1 [Cucumis sativus] >KGN45788.1 hypothetical protein Csa_005301 [Cucumis sativus])

HSP 1 Score: 352.1 bits (902), Expect = 3.0e-93
Identity = 179/185 (96.76%), Postives = 182/185 (98.38%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV
Sbjct: 5   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 64

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 120
           AVM LPSCFNQRTRLEIQADAAFVDLRSRC FFYEFGCKIAPLVGDRTIGSWLLST KSR
Sbjct: 65  AVMALPSCFNQRTRLEIQADAAFVDLRSRCQFFYEFGCKIAPLVGDRTIGSWLLSTLKSR 124

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKEVLTKAH+AVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQ+ASFLSRK
Sbjct: 125 YKEVLTKAHSAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQRASFLSRK 184

Query: 181 RKSSE 186
           RKS+E
Sbjct: 185 RKSTE 189

[Close]

BLAST of CaUC11G212340 vs. NCBI nr
Match: XP_022134062.1 (DNA replication complex GINS protein PSF3-like [Momordica charantia])

HSP 1 Score: 346.7 bits (888), Expect = 1.3e-91
Identity = 173/185 (93.51%), Postives = 179/185 (96.76%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           MT+YYDIDDILAEEELVSVVFQK VNGVGIDPSSETDSVESGSKVELPFWL QELHLRQV
Sbjct: 1   MTNYYDIDDILAEEELVSVVFQKGVNGVGIDPSSETDSVESGSKVELPFWLGQELHLRQV 60

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 120
             MGLP+CFNQRTRLEIQADAAFVDLRSRCP+FYEFGCKIAPLVGDRTIGSWLLSTFK R
Sbjct: 61  VAMGLPACFNQRTRLEIQADAAFVDLRSRCPYFYEFGCKIAPLVGDRTIGSWLLSTFKIR 120

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKEVLTKAH+A+FAASSKYLALLSKEET+MYEAAQSSMTAFKKWRMGGPRFQKASFL RK
Sbjct: 121 YKEVLTKAHSAIFAASSKYLALLSKEETEMYEAAQSSMTAFKKWRMGGPRFQKASFLGRK 180

Query: 181 RKSSE 186
           RKSSE
Sbjct: 181 RKSSE 185

[Close]

BLAST of CaUC11G212340 vs. ExPASy Swiss-Prot
Match: Q0UPV4 (DNA replication complex GINS protein PSF3 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=PSF3 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.8e-17
Identity = 53/172 (30.81%), Postives = 85/172 (49.42%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQ- 60
           M+SYY +D IL + + V   F+  V G+G    + +  ++ GSKVELP WL + L L Q 
Sbjct: 1   MSSYYSVDAILTDAQKVPCTFELTVPGLGFLEGNMSGDMKQGSKVELPLWLGEMLALSQS 60

Query: 61  -----VAVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGSWLL 120
                +  +  PS  + R    ++AD   VDLR+  P FY+ G +I  L  +  +   L 
Sbjct: 61  LNTSSLVTLDPPSALSPRVLNALKADPRTVDLRALAPHFYDLGARILELFEEEKMIEVLS 120

Query: 121 STFKSRYKEVLTKAHT--AVFAASSKYLALLSKEETKMYEAAQSSMTAFKKW 165
            TFK+R   +  +AH         + ++  L + E +++ AA  S  A + W
Sbjct: 121 DTFKARAAVIADQAHNPRGALGEGADFMRGLDENERQLFRAAHDSAKAARTW 172

[Close]

BLAST of CaUC11G212340 vs. ExPASy Swiss-Prot
Match: Q4WQ54 (DNA replication complex GINS protein psf3 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=psf3 PE=3 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-15
Identity = 47/170 (27.65%), Postives = 83/170 (48.82%), Query Frame = 0


Query: 3   SYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHL----- 62
           SYYD+D IL + + +   F+  V G+GI   +  + +++G++++LP WL   L +     
Sbjct: 2   SYYDVDSILTDSQKLPCTFELEVPGLGILEGNPGEDIKAGTRIDLPLWLGVMLSIGARLG 61

Query: 63  -RQVAVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGSWLLST 122
             ++  + LPS  + R    ++AD   VDLRS  P FY    ++  L  +  +   L++T
Sbjct: 62  TSRLVTLDLPSALSDRVVNALKADPRTVDLRSLAPHFYSLSERVLDLFEEEEMVDVLINT 121

Query: 123 FKSRYKEVLTKAHT--AVFAASSKYLALLSKEETKMYEAAQSSMTAFKKW 165
           FK R  E+   AH         + +L  L + E +++  A  S    + W
Sbjct: 122 FKKRAAEIADHAHNPKGALGEGADFLRGLDETERQLFRVAHDSARETRIW 171

[Close]

BLAST of CaUC11G212340 vs. ExPASy Swiss-Prot
Match: Q7ZT01 (DNA replication complex GINS protein PSF3 OS=Xenopus laevis OX=8355 GN=gins3 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-14
Identity = 55/191 (28.80%), Postives = 93/191 (48.69%), Query Frame = 0


Query: 3   SYYDIDDILAEEELVSVVFQKAVNGVG-IDPSSETDSVESGSKVELPFWLAQELH--LRQ 62
           ++  ++D+L  +E +    +     +G +D   ++DS+  GSK+ELP WLA+ L+   R+
Sbjct: 17  NFLSLEDLLMSQEKLPCCIESGFPRLGFLDKGGDSDSIPEGSKMELPLWLAKGLYDNKRR 76

Query: 63  VAVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRT--IGSWLLSTF 122
           V  + LP  + +  R    ADA  VDL    P +Y FG ++          I   +L TF
Sbjct: 77  VLSVELPKIYREGWRTVFSADANVVDLHKMGPHYYGFGSQLLNFDSPENPEIAKTILQTF 136

Query: 123 KSRYKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFL 182
             R++ ++  +  A    +S  +A L + E  ++ A Q  + AF+ W  G      AS L
Sbjct: 137 VGRFRRIMDSSQNAYNEDTSGLVARLDELERSLFRAGQRGLNAFQSWERGKAAQITASNL 196

Query: 183 ---SRKRKSSE 186
               +KRK +E
Sbjct: 197 VQNYKKRKFNE 207

[Close]

BLAST of CaUC11G212340 vs. ExPASy Swiss-Prot
Match: Q54EH6 (Probable DNA replication complex GINS protein PSF3 OS=Dictyostelium discoideum OX=44689 GN=gins3 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-11
Identity = 43/163 (26.38%), Postives = 82/163 (50.31%), Query Frame = 0


Query: 3   SYYDIDDILAEEELVSV-VFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQVA 62
           SY+DI+DILAEE+ ++   F  A N   ++  S    ++ GSKV+LP+W+A  L      
Sbjct: 2   SYFDINDILAEEQKITCNFFYDAYNLGQLEEGSRDPDMKKGSKVDLPYWMALALAKSNFV 61

Query: 63  VMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGSWLLSTFKSRY 122
            + +P  +    + ++ AD   + +R   P++ + G +++   GDR +   L   F+ R+
Sbjct: 62  SVIMPPEYQDEYKNKLIADPNVISMR-LFPYYDKIGVQLSDFFGDRKLKLLLFRVFRERF 121

Query: 123 KEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKW 165
             + +++        SK L  L+ +E +++     S   + KW
Sbjct: 122 LNIYSQSINLKETDISKILGNLTYQEREVFSNGYKSSNDYDKW 163

[Close]

BLAST of CaUC11G212340 vs. ExPASy Swiss-Prot
Match: Q5AFK3 (DNA replication complex GINS protein PSF3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=PSF3 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-11
Identity = 45/173 (26.01%), Postives = 83/173 (47.98%), Query Frame = 0


Query: 2   TSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQVA 61
           T YYD+DDILA+ E ++  F   V G+G    +    +   +K+ELP WL+    L  VA
Sbjct: 3   TDYYDLDDILADSEKLTCKFNITVPGLGYLEGNPGKPIHEDTKLELPHWLSG--ILATVA 62

Query: 62  V----------MGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGS 121
           +          +  P    ++    I+ D   VDL    P++Y    K   L  D+T+ +
Sbjct: 63  IDEDSNINFLDLADPDIIKEKVINAIKTDPLAVDLHKLTPYYYSLILKWGNLYTDKTLIA 122

Query: 122 WLLSTFKSRYKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKW 165
            +++  K+R  E+   ++ A    ++++L  L + E  ++++   S  + +KW
Sbjct: 123 NVMNCLKARSLEIYNFSNNANKTLNNEFLYTLDEFERALFKSTSDSNKSMRKW 173

[Close]

BLAST of CaUC11G212340 vs. ExPASy TrEMBL
Match: A0A1S3B3H3 (DNA replication complex GINS protein PSF3-like OS=Cucumis melo OX=3656 GN=LOC103485572 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 2.9e-94
Identity = 180/185 (97.30%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV
Sbjct: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 120
           AVM LPSCFNQRTRLEIQADAAFVDLRSRC FFYEFGCKIAPLVGDRTIGSWLLSTFKSR
Sbjct: 61  AVMALPSCFNQRTRLEIQADAAFVDLRSRCQFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 120

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKEVLTKAH+AVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQ+ASFLSRK
Sbjct: 121 YKEVLTKAHSAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQRASFLSRK 180

Query: 181 RKSSE 186
           RKS+E
Sbjct: 181 RKSTE 185

[Close]

BLAST of CaUC11G212340 vs. ExPASy TrEMBL
Match: A0A5A7UGU7 (DNA replication complex GINS protein PSF3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G002360 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 2.9e-94
Identity = 180/185 (97.30%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV
Sbjct: 23  MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 82

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 120
           AVM LPSCFNQRTRLEIQADAAFVDLRSRC FFYEFGCKIAPLVGDRTIGSWLLSTFKSR
Sbjct: 83  AVMALPSCFNQRTRLEIQADAAFVDLRSRCQFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 142

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKEVLTKAH+AVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQ+ASFLSRK
Sbjct: 143 YKEVLTKAHSAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQRASFLSRK 202

Query: 181 RKSSE 186
           RKS+E
Sbjct: 203 RKSTE 207

[Close]

BLAST of CaUC11G212340 vs. ExPASy TrEMBL
Match: A0A0A0K8J6 (Sld5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G011640 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.5e-93
Identity = 179/185 (96.76%), Postives = 182/185 (98.38%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV
Sbjct: 5   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 64

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 120
           AVM LPSCFNQRTRLEIQADAAFVDLRSRC FFYEFGCKIAPLVGDRTIGSWLLST KSR
Sbjct: 65  AVMALPSCFNQRTRLEIQADAAFVDLRSRCQFFYEFGCKIAPLVGDRTIGSWLLSTLKSR 124

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKEVLTKAH+AVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQ+ASFLSRK
Sbjct: 125 YKEVLTKAHSAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQRASFLSRK 184

Query: 181 RKSSE 186
           RKS+E
Sbjct: 185 RKSTE 189

[Close]

BLAST of CaUC11G212340 vs. ExPASy TrEMBL
Match: A0A6J1BYI2 (DNA replication complex GINS protein PSF3-like OS=Momordica charantia OX=3673 GN=LOC111006426 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.1e-92
Identity = 173/185 (93.51%), Postives = 179/185 (96.76%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           MT+YYDIDDILAEEELVSVVFQK VNGVGIDPSSETDSVESGSKVELPFWL QELHLRQV
Sbjct: 1   MTNYYDIDDILAEEELVSVVFQKGVNGVGIDPSSETDSVESGSKVELPFWLGQELHLRQV 60

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 120
             MGLP+CFNQRTRLEIQADAAFVDLRSRCP+FYEFGCKIAPLVGDRTIGSWLLSTFK R
Sbjct: 61  VAMGLPACFNQRTRLEIQADAAFVDLRSRCPYFYEFGCKIAPLVGDRTIGSWLLSTFKIR 120

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKEVLTKAH+A+FAASSKYLALLSKEET+MYEAAQSSMTAFKKWRMGGPRFQKASFL RK
Sbjct: 121 YKEVLTKAHSAIFAASSKYLALLSKEETEMYEAAQSSMTAFKKWRMGGPRFQKASFLGRK 180

Query: 181 RKSSE 186
           RKSSE
Sbjct: 181 RKSSE 185

[Close]

BLAST of CaUC11G212340 vs. ExPASy TrEMBL
Match: A0A6J1HEE0 (DNA replication complex GINS protein PSF3-like OS=Cucurbita moschata OX=3662 GN=LOC111462725 PE=3 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 5.2e-91
Identity = 174/185 (94.05%), Postives = 180/185 (97.30%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           MT+YYDIDDILAEEELVSV+FQKAVNGV IDPSSETDSVESGSKVELPFWLA+ELHLRQV
Sbjct: 1   MTNYYDIDDILAEEELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQV 60

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 120
           AVMGLP+CFNQRTRLEIQADAAFVDLRSR  +FYEFGCKIAPLVGDRTIGSWLLSTFKSR
Sbjct: 61  AVMGLPACFNQRTRLEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSR 120

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKEVLTKAHTAVFAASSKYL LLSKEETKMYEAAQSSMTAFKKWR+GGPRFQKASFL RK
Sbjct: 121 YKEVLTKAHTAVFAASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRK 180

Query: 181 RKSSE 186
           RKSSE
Sbjct: 181 RKSSE 185

[Close]

BLAST of CaUC11G212340 vs. TAIR 10
Match: AT1G19080.1 (GINS complex protein )

HSP 1 Score: 260.8 bits (665), Expect = 8.5e-70
Identity = 127/184 (69.02%), Postives = 145/184 (78.80%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           M  Y+DIDDIL EEE V V+F K  NGV IDPS+ET+  E GSKVELPFWLA ELHLRQ 
Sbjct: 1   MAKYFDIDDILIEEEFVPVLFHKTANGVTIDPSAETNCAEQGSKVELPFWLAHELHLRQA 60

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 120
             + LP CF+Q+TRLE+QADAA+VDLRSRCP+FYEFGCKI PLV DRT+G  L + FK R
Sbjct: 61  VTINLPPCFDQKTRLEVQADAAYVDLRSRCPYFYEFGCKIEPLVTDRTLGILLSTAFKIR 120

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKE LTK +TA    +SKYL+ L+KEET +YEAA  SMTAFKKWR GGPRFQ+AS L RK
Sbjct: 121 YKEALTKVYTAAHITASKYLSFLTKEETNLYEAAHLSMTAFKKWRTGGPRFQRASILGRK 180

Query: 181 RKSS 185
           RK S
Sbjct: 181 RKDS 184

[Close]

BLAST of CaUC11G212340 vs. TAIR 10
Match: AT1G19080.2 (GINS complex protein )

HSP 1 Score: 260.8 bits (665), Expect = 8.5e-70
Identity = 127/184 (69.02%), Postives = 145/184 (78.80%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           M  Y+DIDDIL EEE V V+F K  NGV IDPS+ET+  E GSKVELPFWLA ELHLRQ 
Sbjct: 1   MAKYFDIDDILIEEEFVPVLFHKTANGVTIDPSAETNCAEQGSKVELPFWLAHELHLRQA 60

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 120
             + LP CF+Q+TRLE+QADAA+VDLRSRCP+FYEFGCKI PLV DRT+G  L + FK R
Sbjct: 61  VTINLPPCFDQKTRLEVQADAAYVDLRSRCPYFYEFGCKIEPLVTDRTLGILLSTAFKIR 120

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKE LTK +TA    +SKYL+ L+KEET +YEAA  SMTAFKKWR GGPRFQ+AS L RK
Sbjct: 121 YKEALTKVYTAAHITASKYLSFLTKEETNLYEAAHLSMTAFKKWRTGGPRFQRASILGRK 180

Query: 181 RKSS 185
           RK S
Sbjct: 181 RKDS 184

[Close]

BLAST of CaUC11G212340 vs. TAIR 10
Match: AT3G55490.1 (GINS complex protein )

HSP 1 Score: 260.8 bits (665), Expect = 8.5e-70
Identity = 127/184 (69.02%), Postives = 145/184 (78.80%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           M  Y+DIDDIL EEE V V+F K  NGV IDPS+ET+  E GSKVELPFWLA ELHLRQ 
Sbjct: 1   MAKYFDIDDILIEEEFVPVLFHKTANGVTIDPSAETNCAEQGSKVELPFWLAHELHLRQA 60

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 120
             + LP CF+Q+TRLE+QADAA+VDLRSRCP+FYEFGCKI PLV DRT+G  L + FK R
Sbjct: 61  VTINLPPCFDQKTRLEVQADAAYVDLRSRCPYFYEFGCKIEPLVTDRTLGILLSTAFKIR 120

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKE LTK +TA    +SKYL+ L+KEET +YEAA  SMTAFKKWR GGPRFQ+AS L RK
Sbjct: 121 YKEALTKVYTAAHITASKYLSFLTKEETNLYEAAHLSMTAFKKWRTGGPRFQRASILGRK 180

Query: 181 RKSS 185
           RK S
Sbjct: 181 RKDS 184

The following BLAST results are available for this feature:

BLAST of CaUC11G212340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885801.1	9.4e-95	97.84	DNA replication complex GINS protein PSF3-like [Benincasa hispida] >XP_038885802...	[more]
XP_008441464.1	6.1e-94	97.30	PREDICTED: DNA replication complex GINS protein PSF3-like [Cucumis melo] >XP_008...	[more]
KAA0055042.1	6.1e-94	97.30	DNA replication complex GINS protein PSF3-like [Cucumis melo var. makuwa] >TYK24...	[more]
XP_004138422.1	3.0e-93	96.76	DNA replication complex GINS protein PSF3 isoform X1 [Cucumis sativus] >KGN45788...	[more]
XP_022134062.1	1.3e-91	93.51	DNA replication complex GINS protein PSF3-like [Momordica charantia]	[more]

BLAST of CaUC11G212340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0UPV4	4.8e-17	30.81	DNA replication complex GINS protein PSF3 OS=Phaeosphaeria nodorum (strain SN15 ...	[more]
Q4WQ54	2.6e-15	27.65	DNA replication complex GINS protein psf3 OS=Neosartorya fumigata (strain ATCC M...	[more]
Q7ZT01	1.3e-14	28.80	DNA replication complex GINS protein PSF3 OS=Xenopus laevis OX=8355 GN=gins3 PE=...	[more]
Q54EH6	1.0e-11	26.38	Probable DNA replication complex GINS protein PSF3 OS=Dictyostelium discoideum O...	[more]
Q5AFK3	3.9e-11	26.01	DNA replication complex GINS protein PSF3 OS=Candida albicans (strain SC5314 / A...	[more]

BLAST of CaUC11G212340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B3H3	2.9e-94	97.30	DNA replication complex GINS protein PSF3-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5A7UGU7	2.9e-94	97.30	DNA replication complex GINS protein PSF3-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0K8J6	1.5e-93	96.76	Sld5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G011640 PE=3 S...	[more]
A0A6J1BYI2	6.1e-92	93.51	DNA replication complex GINS protein PSF3-like OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1HEE0	5.2e-91	94.05	DNA replication complex GINS protein PSF3-like OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of CaUC11G212340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19080.1	8.5e-70	69.02	GINS complex protein	[more]
AT1G19080.2	8.5e-70	69.02	GINS complex protein	[more]
AT3G55490.1	8.5e-70	69.02	GINS complex protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021151	GINS subunit, domain A	PFAM	PF05916	Sld5	coord: 45..148 e-value: 7.6E-8 score: 32.8
IPR038437	GINS complex, subunit Psf3 superfamily	GENE3D	1.20.58.2050		coord: 1..167 e-value: 3.2E-51 score: 175.5
IPR010492	GINS complex, subunit Psf3	PANTHER	PTHR22768	UNCHARACTERIZED	coord: 1..184
None	No IPR available	CDD	cd11713	GINS_A_psf3	coord: 65..167 e-value: 6.64871E-31 score: 106.581
None	No IPR available	SUPERFAMILY	160059	PriA/YqbF domain	coord: 1..66
IPR036224	GINS, helical bundle-like domain superfamily	SUPERFAMILY	158573	GINS helical bundle-like	coord: 65..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC11G212340.1	CaUC11G212340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902975	mitotic DNA replication initiation
cellular_component	GO:0000811	GINS complex