CaUC11G211870 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC11G211870
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Cytoplasmic tRNA 2-thiolation protein 1
Location	Ciama_Chr11: 24646185 .. 24646421 (-)
RNA-Seq Expression	CaUC11G211870
Synteny	CaUC11G211870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAACAATGGAGGAGGCAGCTCTTTTCAAATGCCACTTCACTACCCGAGATACTCGAAGAAGGACTACGAGAACATGCCTGAATGGAAGCTCGACCGCCTTCTCGTCGAGTATGGTCTCCCGACTCACGGCGACTTGCCTTACAAACGACAGTTCGCTATGGGTGCTTTCCTTTGGCCTGACTTCCACCGTAGCTTTAAAGATCCTTCTCTTCTTCATAAGAAAGTTATGTAG

mRNA sequence

ATGGACAACAATGGAGGAGGCAGCTCTTTTCAAATGCCACTTCACTACCCGAGATACTCGAAGAAGGACTACGAGAACATGCCTGAATGGAAGCTCGACCGCCTTCTCGTCGAGTATGGTCTCCCGACTCACGGCGACTTGCCTTACAAACGACAGTTCGCTATGGGTGCTTTCCTTTGGCCTGACTTCCACCGTAGCTTTAAAGATCCTTCTCTTCTTCATAAGAAAGTTATGTAG

Coding sequence (CDS)

ATGGACAACAATGGAGGAGGCAGCTCTTTTCAAATGCCACTTCACTACCCGAGATACTCGAAGAAGGACTACGAGAACATGCCTGAATGGAAGCTCGACCGCCTTCTCGTCGAGTATGGTCTCCCGACTCACGGCGACTTGCCTTACAAACGACAGTTCGCTATGGGTGCTTTCCTTTGGCCTGACTTCCACCGTAGCTTTAAAGATCCTTCTCTTCTTCATAAGAAAGTTATGTAG

Protein sequence

MDNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTHGDLPYKRQFAMGAFLWPDFHRSFKDPSLLHKKVM

Homology

[Close]

BLAST of CaUC11G211870 vs. NCBI nr
Match: KAG6578420.1 (hypothetical protein SDJN03_22868, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015984.1 hypothetical protein SDJN02_21088, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.9 bits (346), Expect = 3.8e-29
Identity = 64/83 (77.11%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 1  MDNN----GGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTHGDLPYKRQFAMG 60
          M+NN    GG + FQMPLHYPRYSK DYENMPEWKLDRLL+EYGLPTHG+LPYKRQFAMG
Sbjct: 1  MENNEKKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMG 60

Query: 61 AFLWPDFHRSFK-DPSLLHKKVM 79
          AFLW D+H +FK DPSLL+ K+M
Sbjct: 61 AFLWHDYHPTFKLDPSLLNNKLM 83

[Close]

BLAST of CaUC11G211870 vs. NCBI nr
Match: PON37357.1 (hypothetical protein PanWU01x14_320780 [Parasponia andersonii])

HSP 1 Score: 127.5 bits (319), Expect = 5.1e-26
Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 2  DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTHGDLPYKRQFAMGAFLWP 61
          D+N G S FQMPLHYPRY+KKDY++MPEWKLDRLL EYGL THGDL YKR FA+GAFLWP
Sbjct: 25 DSNNGVSYFQMPLHYPRYTKKDYQDMPEWKLDRLLAEYGLSTHGDLAYKRDFAIGAFLWP 84

Query: 62 DFHRSFKDPSLLHKKV 78
          D+ R+F D SLL KKV
Sbjct: 85 DY-RTFTDASLLDKKV 99

[Close]

BLAST of CaUC11G211870 vs. NCBI nr
Match: PON65649.1 (cytoplasmic tRNA 2-thiolation protein [Trema orientale])

HSP 1 Score: 126.7 bits (317), Expect = 8.7e-26
Identity = 59/87 (67.82%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 2   DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTHGDLPYKRQFAMGAFLWP 61
           D+N G S FQMPLHYPRY+KKDY++MPEWKLDRLL EYGL THGDL YKR FA+GAFLWP
Sbjct: 25  DSNNGVSYFQMPLHYPRYTKKDYQDMPEWKLDRLLAEYGLSTHGDLAYKRDFAIGAFLWP 84

Query: 62  DFH-----------RSFKDPSLLHKKV 78
           D+H           R+F D SLL KKV
Sbjct: 85  DYHQDRKPSSSLSYRTFTDASLLDKKV 111

[Close]

BLAST of CaUC11G211870 vs. NCBI nr
Match: XP_010108400.1 (uncharacterized protein LOC21393700 [Morus notabilis] >EXC19391.1 hypothetical protein L484_010408 [Morus notabilis])

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-24
Identity = 55/84 (65.48%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 3  NNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTHGDLPYKRQFAMGAFLWPD 62
          N  G S FQMPLHYPRY+K+DY++MPEWKLD+LL +YGLPTHGDL YKR FA+GAFLWPD
Sbjct: 8  NESGVSYFQMPLHYPRYTKQDYQDMPEWKLDQLLAQYGLPTHGDLAYKRDFAIGAFLWPD 67

Query: 63 FH---------RSFKDPSLLHKKV 78
          FH         R+  D SLL KK+
Sbjct: 68 FHQGSKPPPPYRTINDASLLDKKI 91

[Close]

BLAST of CaUC11G211870 vs. NCBI nr
Match: KAF4351382.1 (hypothetical protein G4B88_028221 [Cannabis sativa])

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-24
Identity = 58/87 (66.67%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 2   DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTHGDLPYKRQFAMGAFLWP 61
           D + G S FQMPLHYPRY+KKDY++MPEWKLDRLL EYGLPTHGDL YKR FA+GAFLWP
Sbjct: 26  DASNGISYFQMPLHYPRYTKKDYQDMPEWKLDRLLTEYGLPTHGDLAYKRDFAIGAFLWP 85

Query: 62  DF-----------HRSFKDPSLLHKKV 78
            F           + SF D SLL KKV
Sbjct: 86  SFRPEHKTSSSPSYHSFNDTSLLDKKV 112

[Close]

BLAST of CaUC11G211870 vs. ExPASy TrEMBL
Match: A0A2P5ALC9 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_320780 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.5e-26
Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 2  DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTHGDLPYKRQFAMGAFLWP 61
          D+N G S FQMPLHYPRY+KKDY++MPEWKLDRLL EYGL THGDL YKR FA+GAFLWP
Sbjct: 25 DSNNGVSYFQMPLHYPRYTKKDYQDMPEWKLDRLLAEYGLSTHGDLAYKRDFAIGAFLWP 84

Query: 62 DFHRSFKDPSLLHKKV 78
          D+ R+F D SLL KKV
Sbjct: 85 DY-RTFTDASLLDKKV 99

[Close]

BLAST of CaUC11G211870 vs. ExPASy TrEMBL
Match: A0A2P5CX72 (Cytoplasmic tRNA 2-thiolation protein OS=Trema orientale OX=63057 GN=TorRG33x02_270200 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.2e-26
Identity = 59/87 (67.82%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 2   DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTHGDLPYKRQFAMGAFLWP 61
           D+N G S FQMPLHYPRY+KKDY++MPEWKLDRLL EYGL THGDL YKR FA+GAFLWP
Sbjct: 25  DSNNGVSYFQMPLHYPRYTKKDYQDMPEWKLDRLLAEYGLSTHGDLAYKRDFAIGAFLWP 84

Query: 62  DFH-----------RSFKDPSLLHKKV 78
           D+H           R+F D SLL KKV
Sbjct: 85  DYHQDRKPSSSLSYRTFTDASLLDKKV 111

[Close]

BLAST of CaUC11G211870 vs. ExPASy TrEMBL
Match: A0A7J6DZ12 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_028221 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.9e-25
Identity = 58/87 (66.67%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 2   DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTHGDLPYKRQFAMGAFLWP 61
           D + G S FQMPLHYPRY+KKDY++MPEWKLDRLL EYGLPTHGDL YKR FA+GAFLWP
Sbjct: 26  DASNGISYFQMPLHYPRYTKKDYQDMPEWKLDRLLTEYGLPTHGDLAYKRDFAIGAFLWP 85

Query: 62  DF-----------HRSFKDPSLLHKKV 78
            F           + SF D SLL KKV
Sbjct: 86  SFRPEHKTSSSPSYHSFNDTSLLDKKV 112

[Close]

BLAST of CaUC11G211870 vs. ExPASy TrEMBL
Match: W9SNS4 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010408 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.9e-25
Identity = 55/84 (65.48%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 3  NNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTHGDLPYKRQFAMGAFLWPD 62
          N  G S FQMPLHYPRY+K+DY++MPEWKLD+LL +YGLPTHGDL YKR FA+GAFLWPD
Sbjct: 8  NESGVSYFQMPLHYPRYTKQDYQDMPEWKLDQLLAQYGLPTHGDLAYKRDFAIGAFLWPD 67

Query: 63 FH---------RSFKDPSLLHKKV 78
          FH         R+  D SLL KK+
Sbjct: 68 FHQGSKPPPPYRTINDASLLDKKI 91

[Close]

BLAST of CaUC11G211870 vs. ExPASy TrEMBL
Match: A0A7J6DP11 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_014410 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.8e-24
Identity = 58/87 (66.67%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 2   DNNGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTHGDLPYKRQFAMGAFLWP 61
           D + G S FQMPLHYPRY+KKDY++MPEWKLDRLL EYGLPTHGDL YKR FA+GAFLWP
Sbjct: 26  DASNGISYFQMPLHYPRYTKKDYQDMPEWKLDRLLNEYGLPTHGDLAYKRDFAIGAFLWP 85

Query: 62  DF-----------HRSFKDPSLLHKKV 78
            F           + SF D SLL KKV
Sbjct: 86  SFRPEHKTSSSPSYHSFNDTSLLDKKV 112

[Close]

BLAST of CaUC11G211870 vs. TAIR 10
Match: AT3G55570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-22
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 4  NGGGSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTHGDLPYKRQFAMGAFLWPDF 63
          NG GS F+MPLHYPRYSK+DY++MPEWKLDR+L +YGL T+GDL +KR FA+GAFLW   
Sbjct: 26 NGEGSVFRMPLHYPRYSKEDYQDMPEWKLDRVLADYGLSTYGDLAHKRDFAIGAFLW--- 85

Query: 64 HRSFKDPSLLHKK 77
            S ++P L  +K
Sbjct: 86 -ISTRNPKLYQEK 94

[Close]

BLAST of CaUC11G211870 vs. TAIR 10
Match: AT5G41761.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 90.5 bits (223), Expect = 6.4e-19
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 8  SSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTHGDLPYKRQFAMGAFLW 61
          SSFQ+PLHYP+Y+K DYE MPEW+LDRLL EYGLP  GD   KR+FA+GAFLW
Sbjct: 43 SSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLW 95

[Close]

BLAST of CaUC11G211870 vs. TAIR 10
Match: AT3G09950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.1 bits (183), Expect = 2.8e-14
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 1  MDNNGG----GSSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTHGD--LPYKRQFA 60
          +D NG      S F+MPLHYPRY+K+DYE M EW+LD LL EYGL    D  L  KR FA
Sbjct: 23 LDKNGAVKAPSSGFKMPLHYPRYTKEDYEEMEEWRLDLLLSEYGLLAFHDNTLHEKRAFA 82

Query: 61 MGAFLWP 62
          +  F+WP
Sbjct: 83 IDTFIWP 89

[Close]

BLAST of CaUC11G211870 vs. TAIR 10
Match: AT5G55620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 1.8e-13
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 8  SSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTHGDLPYKRQFAMGAFLWPD 63
          S FQ+PLHYP+YSK DYE M + +LD LL +YG    G L  KR FA+ +FLWPD
Sbjct: 45 SGFQVPLHYPKYSKSDYEVMDDLRLDLLLKQYGFSFEGSLEDKRVFAIESFLWPD 99

[Close]

BLAST of CaUC11G211870 vs. TAIR 10
Match: AT3G11405.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 71.2 bits (173), Expect = 4.0e-13
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 8   SSFQMPLHYPRYSKKDYENMPEWKLDRLLVEYGLPTH-GDLPYKRQFAMGAFLW 61
           SSFQMPL YP Y+K+ Y+ M E +LDRLL  YGLPT  G+L  K++FA+GAFLW
Sbjct: 55  SSFQMPLQYPNYAKEQYDIMSEEELDRLLKLYGLPTDIGNLSCKKEFAVGAFLW 108

The following BLAST results are available for this feature:

BLAST of CaUC11G211870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578420.1	3.8e-29	77.11	hypothetical protein SDJN03_22868, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PON37357.1	5.1e-26	76.32	hypothetical protein PanWU01x14_320780 [Parasponia andersonii]	[more]
PON65649.1	8.7e-26	67.82	cytoplasmic tRNA 2-thiolation protein [Trema orientale]	[more]
XP_010108400.1	1.6e-24	65.48	uncharacterized protein LOC21393700 [Morus notabilis] >EXC19391.1 hypothetical p...	[more]
KAF4351382.1	1.6e-24	66.67	hypothetical protein G4B88_028221 [Cannabis sativa]	[more]

BLAST of CaUC11G211870 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC11G211870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5ALC9	2.5e-26	76.32	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_320780 PE...	[more]
A0A2P5CX72	4.2e-26	67.82	Cytoplasmic tRNA 2-thiolation protein OS=Trema orientale OX=63057 GN=TorRG33x02_...	[more]
A0A7J6DZ12	7.9e-25	66.67	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_028221 PE=4 SV=1	[more]
W9SNS4	7.9e-25	65.48	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010408 PE=4 SV=1	[more]
A0A7J6DP11	1.8e-24	66.67	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_014410 PE=4 SV=1	[more]

BLAST of CaUC11G211870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55570.1	1.2e-22	63.01	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G41761.1	6.4e-19	73.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G09950.1	2.8e-14	55.22	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G55620.1	1.8e-13	58.18	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G11405.1	4.0e-13	62.96	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33513:SF4	OS01G0221400 PROTEIN	coord: 7..62
None	No IPR available	PANTHER	PTHR33513	OS06G0523300 PROTEIN	coord: 7..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC11G211870.1	CaUC11G211870.1	mRNA