CaUC11G211440 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC11G211440
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	50S ribosomal protein L27
Location	Ciama_Chr11: 24041228 .. 24042606 (+)
RNA-Seq Expression	CaUC11G211440
Synteny	CaUC11G211440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAATAAGTGTAATTACAATAAATTGATAGCGTATTTAAAATAAAAAAAAATATATATGTATTTGGAAAAAAAAACATAATTTTGGTAATTGATAGCGTAATTAGGCGTATTTACAGTAAATTGTATGGGCGTTTGATTTTAGGGTGGAGTGTGGGTTGTTGGGGCTGTGGCGATCCTGGCTGTAAGTTCTATCTAAGGATAAGGTTCGCATGCCCTCCCTCTCCCCATATCCATTTCCTTTCTCAATTAACTAATTCTCTGGATCTGAAAGGCTCATCAATTTTGTTGGATTTCCCCCTTCCACCCAAAGCCAAAGCCATGAGTTTAAACCTAGTCGCTGCATTCACCGGTCTCTCTCTCGCCTCTTCTTCCTCTTTCCTCAAAGGCGATTTCCGCTCTATTCAAACCCCTCCCAACCTCTCCTTCTCCTTCCCCAACACATTCCCTTTAACCATTCAAAACGCCCACAAGAAAGGAGCTGGAAGCACCAAGAACGGCCGTGATTCCAAGGGCCAGAGGCTCGGCGTTAAAATCTTCGGTGACCAACTTGCCAAGCCTGGTTCCATCATCGTTCGTCAGCGTGGAACCAAGGTAATTTTCAATTTTACATGCACTTCAACTCCCTACCCCTTTCGCCCATTGTTTAGGGCTTTTTCGAGCTTCCAATGCTCTTTATTTACTATGTCCACATACACCCAACTTCTTTGTAATTCAGTTCCATGCCGGAAAGAATGTGGGGCTTGGCAAGGACCATACAATTTTCTCATTGATTGATGGGCTTGTAAAGTTCGAGAAGTATGGACCTGACAAGAAGAAGGTTTCACTTCGAATCTGAACCTTTCAATATCTTAATTATATTGCACGAATGAAACACAAAACTGAGATATATTTTACTTCATTGCATTGCAGGTGAGTGTCTACCCAAGAGAAGTGCAGCCTGAAAATCCAAACAGCTATAGAGCAAGGAAGAGGGAGTATTTCAGGCTGCAAAGAGAGCGCAAGAAAGCAAGAAAAGAAGGCATTGTTGCTCAACCCCAATTGGTATTAGCTTCCACTGATGCTACTGAAACCAATCCAGTTTGCTGATTTCTGGAGGCATCACTTCAATCACTGCTTCTTTAAAAGCCCTGATGATAATCTTGCAGATAGAAGGTCTGCTTCATTAGCTTCTCCTTTTTTGGTTGTGCACATATAATTTCCCAGATTCTTCACAGGAATGTGTTTCATTATTATTATTCTCAATTAGTAGTACTCGTTTTGTTCTACTTTTTGCCCCTAAATTTTCTCTAGGTCCATTTTGCTACTGACTACTTTTCGTTGATTTTGCTGTCAACATGGTCTTCAACAGAAGAGATAATGAGGGGTGAGTTCTGA

mRNA sequence

ATGAGGTGGAGTGTGGGTTGTTGGGGCTGTGGCGATCCTGGCTGTAAGTTCTATCTAAGGATAAGGTTCGCATGCCCTCCCTCTCCCCATATCCATTTCCTTTCTCAATTAACTAATTCTCTGGATCTGAAAGGCTCATCAATTTTGTTGGATTTCCCCCTTCCACCCAAAGCCAAAGCCATGAGTTTAAACCTAGTCGCTGCATTCACCGGTCTCTCTCTCGCCTCTTCTTCCTCTTTCCTCAAAGGCGATTTCCGCTCTATTCAAACCCCTCCCAACCTCTCCTTCTCCTTCCCCAACACATTCCCTTTAACCATTCAAAACGCCCACAAGAAAGGAGCTGGAAGCACCAAGAACGGCCGTGATTCCAAGGGCCAGAGGCTCGGCGTTAAAATCTTCGGTGACCAACTTGCCAAGCCTGGTTCCATCATCGTTCGTCAGCGTGGAACCAAGTTCCATGCCGGAAAGAATGTGGGGCTTGGCAAGGACCATACAATTTTCTCATTGATTGATGGGCTTGTAAAGTTCGAGAAGTATGGACCTGACAAGAAGAAGGTGAGTGTCTACCCAAGAGAAGTGCAGCCTGAAAATCCAAACAGCTATAGAGCAAGGAAGAGGGAGTATTTCAGGCTGCAAAGAGAGCGCAAGAAAGCAAGAAAAGAAGGCATTGTTGCTCAACCCCAATTGGTATTAGCTTCCACTGATGCTACTGAAACCAATCCAGTCCATTTTGCTACTGACTACTTTTCGTTGATTTTGCTGTCAACATGGTCTTCAACAGAAGAGATAATGAGGGGTGAGTTCTGA

Coding sequence (CDS)

ATGAGGTGGAGTGTGGGTTGTTGGGGCTGTGGCGATCCTGGCTGTAAGTTCTATCTAAGGATAAGGTTCGCATGCCCTCCCTCTCCCCATATCCATTTCCTTTCTCAATTAACTAATTCTCTGGATCTGAAAGGCTCATCAATTTTGTTGGATTTCCCCCTTCCACCCAAAGCCAAAGCCATGAGTTTAAACCTAGTCGCTGCATTCACCGGTCTCTCTCTCGCCTCTTCTTCCTCTTTCCTCAAAGGCGATTTCCGCTCTATTCAAACCCCTCCCAACCTCTCCTTCTCCTTCCCCAACACATTCCCTTTAACCATTCAAAACGCCCACAAGAAAGGAGCTGGAAGCACCAAGAACGGCCGTGATTCCAAGGGCCAGAGGCTCGGCGTTAAAATCTTCGGTGACCAACTTGCCAAGCCTGGTTCCATCATCGTTCGTCAGCGTGGAACCAAGTTCCATGCCGGAAAGAATGTGGGGCTTGGCAAGGACCATACAATTTTCTCATTGATTGATGGGCTTGTAAAGTTCGAGAAGTATGGACCTGACAAGAAGAAGGTGAGTGTCTACCCAAGAGAAGTGCAGCCTGAAAATCCAAACAGCTATAGAGCAAGGAAGAGGGAGTATTTCAGGCTGCAAAGAGAGCGCAAGAAAGCAAGAAAAGAAGGCATTGTTGCTCAACCCCAATTGGTATTAGCTTCCACTGATGCTACTGAAACCAATCCAGTCCATTTTGCTACTGACTACTTTTCGTTGATTTTGCTGTCAACATGGTCTTCAACAGAAGAGATAATGAGGGGTGAGTTCTGA

Protein sequence

MRWSVGCWGCGDPGCKFYLRIRFACPPSPHIHFLSQLTNSLDLKGSSILLDFPLPPKAKAMSLNLVAAFTGLSLASSSSFLKGDFRSIQTPPNLSFSFPNTFPLTIQNAHKKGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLASTDATETNPVHFATDYFSLILLSTWSSTEEIMRGEF

Homology

[Close]

BLAST of CaUC11G211440 vs. NCBI nr
Match: XP_038884234.1 (50S ribosomal protein L27, chloroplastic [Benincasa hispida])

HSP 1 Score: 340.1 bits (871), Expect = 1.7e-89
Identity = 173/182 (95.05%), Postives = 176/182 (96.70%), Query Frame = 0


Query: 61  MSLNLVAAFTGLSLASSSSFLKGDFRSIQTPPNLSFSFPNTFPLTIQNAHKKGAGSTKNG 120
           MSLNLVAAF GLSL SSSSF KGDF SIQTPP LSFSFPNTFPLTI+NAHKKGAGSTKNG
Sbjct: 1   MSLNLVAAFKGLSLVSSSSFFKGDFGSIQTPPKLSFSFPNTFPLTIENAHKKGAGSTKNG 60

Query: 121 RDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 180
           RDSKGQRLGVKIFGDQ+AKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG
Sbjct: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120

Query: 181 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLASTDATETN 240
           PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGI+AQP LVLASTDATETN
Sbjct: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPLLVLASTDATETN 180

Query: 241 PV 243
           PV
Sbjct: 181 PV 182

[Close]

BLAST of CaUC11G211440 vs. NCBI nr
Match: XP_008441337.1 (PREDICTED: 50S ribosomal protein L27, chloroplastic [Cucumis melo])

HSP 1 Score: 335.5 bits (859), Expect = 4.2e-88
Identity = 169/182 (92.86%), Postives = 175/182 (96.15%), Query Frame = 0


Query: 61  MSLNLVAAFTGLSLASSSSFLKGDFRSIQTPPNLSFSFPNTFPLTIQNAHKKGAGSTKNG 120
           M+LNLVA+F GLSLASSSSF KGDF SI TPPNLS SFPNTFPLTI+NAHKKGAGSTKNG
Sbjct: 1   MTLNLVASFRGLSLASSSSFFKGDFGSIHTPPNLSLSFPNTFPLTIENAHKKGAGSTKNG 60

Query: 121 RDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 180
           RDSKGQRLGVKIFGDQ+AKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG
Sbjct: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120

Query: 181 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLASTDATETN 240
           PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGI+AQPQL+LASTD  ETN
Sbjct: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLILASTDDVETN 180

Query: 241 PV 243
           PV
Sbjct: 181 PV 182

[Close]

BLAST of CaUC11G211440 vs. NCBI nr
Match: KAG7015950.1 (50S ribosomal protein L27, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 328.6 bits (841), Expect = 5.2e-86
Identity = 169/185 (91.35%), Postives = 174/185 (94.05%), Query Frame = 0


Query: 60  AMSLNLVAAFTGLSLA--SSSSFLKGDFRSIQTPPNLSFSFPNTFPLTIQNAHKKGAGST 119
           AMSLNL+ AF GLSLA  SSSSF KGDF SIQ PP LS SFPN FPLTI+NAHKKGAGST
Sbjct: 19  AMSLNLIGAFRGLSLASSSSSSFFKGDFGSIQLPPKLSVSFPNRFPLTIENAHKKGAGST 78

Query: 120 KNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFE 179
           KNGRDSKGQRLGVKI+GDQ+AKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFE
Sbjct: 79  KNGRDSKGQRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFE 138

Query: 180 KYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLASTDAT 239
           KYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG +AQPQLVLASTDAT
Sbjct: 139 KYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGTIAQPQLVLASTDAT 198

Query: 240 ETNPV 243
           ETNPV
Sbjct: 199 ETNPV 203

[Close]

BLAST of CaUC11G211440 vs. NCBI nr
Match: XP_023550670.1 (50S ribosomal protein L27, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023550671.1 50S ribosomal protein L27, chloroplastic [Cucurbita pepo subsp. pepo] >KAG6578368.1 50S ribosomal protein L27, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 327.0 bits (837), Expect = 1.5e-85
Identity = 168/184 (91.30%), Postives = 173/184 (94.02%), Query Frame = 0


Query: 61  MSLNLVAAFTGLSLA--SSSSFLKGDFRSIQTPPNLSFSFPNTFPLTIQNAHKKGAGSTK 120
           MSLNL+ AF GLSLA  SSSSF KGDF SIQ PP LS SFPN FPLTI+NAHKKGAGSTK
Sbjct: 1   MSLNLIGAFRGLSLASSSSSSFFKGDFGSIQLPPKLSVSFPNRFPLTIENAHKKGAGSTK 60

Query: 121 NGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 180
           NGRDSKGQRLGVKI+GDQ+AKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 61  NGRDSKGQRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120

Query: 181 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLASTDATE 240
           YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG +AQPQLVLASTDATE
Sbjct: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGTIAQPQLVLASTDATE 180

Query: 241 TNPV 243
           TNPV
Sbjct: 181 TNPV 184

[Close]

BLAST of CaUC11G211440 vs. NCBI nr
Match: XP_022133707.1 (50S ribosomal protein L27, chloroplastic [Momordica charantia])

HSP 1 Score: 325.9 bits (834), Expect = 3.3e-85
Identity = 167/185 (90.27%), Postives = 173/185 (93.51%), Query Frame = 0


Query: 60  AMSLNLVAAFTGLSL--ASSSSFLKGDFRSIQTPPNLSFSFPNTFPLTIQNAHKKGAGST 119
           AMSLNLV AF GLSL  +SSSSF +GDF S+Q PP  S SFPN FPLTI+NAHKKGAGST
Sbjct: 5   AMSLNLVGAFRGLSLVSSSSSSFFRGDFASVQPPPKFSLSFPNRFPLTIENAHKKGAGST 64

Query: 120 KNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFE 179
           KNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFE
Sbjct: 65  KNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFE 124

Query: 180 KYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLASTDAT 239
           KYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG +AQPQLVLAS+DAT
Sbjct: 125 KYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGSIAQPQLVLASSDAT 184

Query: 240 ETNPV 243
           ETNPV
Sbjct: 185 ETNPV 189

[Close]

BLAST of CaUC11G211440 vs. ExPASy Swiss-Prot
Match: P30155 (50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL27 PE=1 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.7e-69
Identity = 135/168 (80.36%), Postives = 148/168 (88.10%), Query Frame = 0


Query: 60  AMSLNLVAAFTGLSLASSSSFLKGDF-RSIQTPPNLSFSFPNTFPLTIQNAHKKGAGSTK 119
           A+S +LV AF GLSLASSSSFLKGDF  +    P  S SFP   PLTI++AHKKGAGSTK
Sbjct: 2   AVSFSLVGAFKGLSLASSSSFLKGDFGAAFPVAPKFSVSFPLKSPLTIESAHKKGAGSTK 61

Query: 120 NGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 179
           NGRDS GQRLGVKIFGDQ+AKPGSIIVRQRGTKFH GKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 62  NGRDSPGQRLGVKIFGDQVAKPGSIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEK 121

Query: 180 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQ 227
           +GPD+KK+SVYPREVQPENPNSYR RKRE FRLQRER+KAR+EG++ Q
Sbjct: 122 FGPDRKKISVYPREVQPENPNSYRNRKRESFRLQRERRKARREGVILQ 169

[Close]

BLAST of CaUC11G211440 vs. ExPASy Swiss-Prot
Match: P82190 (50S ribosomal protein L27, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL27 PE=1 SV=2)

HSP 1 Score: 260.8 bits (665), Expect = 1.7e-68
Identity = 139/188 (73.94%), Postives = 160/188 (85.11%), Query Frame = 0


Query: 60  AMSLNLVAAFTGLSL--ASSSSFLKGDF-RSIQTPPNLSFSFPNTFPLTIQNAHKKGAGS 119
           +MS NL+A+F G+SL  +SSSSF KG+F  S    PN S    + FPLTI++AHKKGAGS
Sbjct: 6   SMSFNLMASFRGMSLSSSSSSSFFKGEFGPSSLRLPNKSPLSVSPFPLTIESAHKKGAGS 65

Query: 120 TKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKF 179
           TKNGRDSKGQRLGVKI+GDQ+AKPG+II+RQRGTKFH GKNVG+GKDHTIF+LIDGLVKF
Sbjct: 66  TKNGRDSKGQRLGVKIYGDQVAKPGAIIIRQRGTKFHPGKNVGIGKDHTIFALIDGLVKF 125

Query: 180 EKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLAS--T 239
           EKYGPDKKKVSVYPRE+QPENPNSYRARKRE FRLQRE+KKAR+EG   QPQL+LAS  T
Sbjct: 126 EKYGPDKKKVSVYPREIQPENPNSYRARKRENFRLQREKKKARREGYSFQPQLILASAAT 185

Query: 240 DATETNPV 243
           D  + + V
Sbjct: 186 DNADESAV 193

[Close]

BLAST of CaUC11G211440 vs. ExPASy Swiss-Prot
Match: Q9FLN4 (50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 6.2e-66
Identity = 136/196 (69.39%), Postives = 157/196 (80.10%), Query Frame = 0


Query: 58  AKAMSLNLVAAFTGLSLASSSSFLKGDFRSIQTPPNLSF-------SFPNTFPLTIQNAH 117
           A +MSLNL+ AF GLSL+S+SSFL+GD   +   P  SF       +     PLTI++AH
Sbjct: 4   ATSMSLNLIGAFKGLSLSSTSSFLRGD---LSFSPKTSFTVTLPLENLQAPIPLTIESAH 63

Query: 118 KKGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLI 177
           KKGAGSTKNGRDS GQRLGVKI+GDQ+AKPG+IIVRQRGTKFHAGKNVG+GKDHTIFSLI
Sbjct: 64  KKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLI 123

Query: 178 DGLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG---IVAQP 237
           DGLVKFEK+GPD+KK+SVYPRE+ PENPNSYRARKRE FRLQRE+KKAR+E     +  P
Sbjct: 124 DGLVKFEKFGPDRKKISVYPREIVPENPNSYRARKRENFRLQREKKKARRENYSYTLPTP 183

Query: 238 QLVL--ASTDATETNP 242
           +LVL  AS D  E NP
Sbjct: 184 ELVLASASVDDAEANP 196

[Close]

BLAST of CaUC11G211440 vs. ExPASy Swiss-Prot
Match: O65037 (50S ribosomal protein L27, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.1e-61
Identity = 128/185 (69.19%), Postives = 147/185 (79.46%), Query Frame = 0


Query: 60  AMSLNLVAAFTGLSL------ASSSSFLKGDFRSIQTPPNLSFSFPNTFP---LTIQNAH 119
           +M+  LV AF G+SL      +SS+SFL+ D  S+     +    P T P   LTIQ AH
Sbjct: 3   SMAFTLVGAFKGMSLSSPCHSSSSASFLRADRVSLSVGGGVGMGVPMTMPVRRLTIQMAH 62

Query: 120 KKGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLI 179
           KKGAGSTKNGRDS GQRLGVKI+GDQ+AKPG+II+RQRGT+ + G NVG+GKDHT+FSLI
Sbjct: 63  KKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIIRQRGTRVYPGNNVGMGKDHTLFSLI 122

Query: 180 DGLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLV 236
           DGLVKFEKYGPDKKKVSVYP E QPENPNSYRARKREYFR+QRERKKAR EGIV + QLV
Sbjct: 123 DGLVKFEKYGPDKKKVSVYPYEKQPENPNSYRARKREYFRMQRERKKARAEGIV-EVQLV 182

[Close]

BLAST of CaUC11G211440 vs. ExPASy Swiss-Prot
Match: A6Q4D3 (50S ribosomal protein L27 OS=Nitratiruptor sp. (strain SB155-2) OX=387092 GN=rpmA PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.0e-29
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 109 AHKKGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 168
           AHKKG GST+N RDS G+RLGVK FG +  + G+II+RQRGTK H G NVGLGKDHTIF+
Sbjct: 2   AHKKGQGSTQNNRDSAGRRLGVKKFGGEFVRAGNIIIRQRGTKVHPGNNVGLGKDHTIFA 61

Query: 169 LIDGLVKFEKYGPDKKKVSVYPRE 193
           LIDG+VKFE+YG D++KVSVYP E
Sbjct: 62  LIDGVVKFERYGKDRQKVSVYPVE 85

[Close]

BLAST of CaUC11G211440 vs. ExPASy TrEMBL
Match: A0A1S3B381 (50S ribosomal protein L27, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485482 PE=3 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 2.0e-88
Identity = 169/182 (92.86%), Postives = 175/182 (96.15%), Query Frame = 0


Query: 61  MSLNLVAAFTGLSLASSSSFLKGDFRSIQTPPNLSFSFPNTFPLTIQNAHKKGAGSTKNG 120
           M+LNLVA+F GLSLASSSSF KGDF SI TPPNLS SFPNTFPLTI+NAHKKGAGSTKNG
Sbjct: 1   MTLNLVASFRGLSLASSSSFFKGDFGSIHTPPNLSLSFPNTFPLTIENAHKKGAGSTKNG 60

Query: 121 RDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 180
           RDSKGQRLGVKIFGDQ+AKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG
Sbjct: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120

Query: 181 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLASTDATETN 240
           PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGI+AQPQL+LASTD  ETN
Sbjct: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLILASTDDVETN 180

Query: 241 PV 243
           PV
Sbjct: 181 PV 182

[Close]

BLAST of CaUC11G211440 vs. ExPASy TrEMBL
Match: A0A6J1BXH1 (50S ribosomal protein L27, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006224 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.6e-85
Identity = 167/185 (90.27%), Postives = 173/185 (93.51%), Query Frame = 0


Query: 60  AMSLNLVAAFTGLSL--ASSSSFLKGDFRSIQTPPNLSFSFPNTFPLTIQNAHKKGAGST 119
           AMSLNLV AF GLSL  +SSSSF +GDF S+Q PP  S SFPN FPLTI+NAHKKGAGST
Sbjct: 5   AMSLNLVGAFRGLSLVSSSSSSFFRGDFASVQPPPKFSLSFPNRFPLTIENAHKKGAGST 64

Query: 120 KNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFE 179
           KNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFE
Sbjct: 65  KNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFE 124

Query: 180 KYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLASTDAT 239
           KYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG +AQPQLVLAS+DAT
Sbjct: 125 KYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGSIAQPQLVLASSDAT 184

Query: 240 ETNPV 243
           ETNPV
Sbjct: 185 ETNPV 189

[Close]

BLAST of CaUC11G211440 vs. ExPASy TrEMBL
Match: A0A6J1K388 (50S ribosomal protein L27, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489672 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 2.1e-85
Identity = 167/184 (90.76%), Postives = 173/184 (94.02%), Query Frame = 0


Query: 61  MSLNLVAAFTGLSLA--SSSSFLKGDFRSIQTPPNLSFSFPNTFPLTIQNAHKKGAGSTK 120
           MSLNL+ AF GLSLA  SSSSF KGDF SIQ PP LS SFPN FPLTI+NAHKKGAGSTK
Sbjct: 1   MSLNLIGAFRGLSLASSSSSSFFKGDFGSIQLPPKLSVSFPNRFPLTIENAHKKGAGSTK 60

Query: 121 NGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 180
           NGRDSKGQRLGVKI+GDQ+AKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 61  NGRDSKGQRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120

Query: 181 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLASTDATE 240
           YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG ++QPQLVLASTDATE
Sbjct: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGSISQPQLVLASTDATE 180

Query: 241 TNPV 243
           TNPV
Sbjct: 181 TNPV 184

[Close]

BLAST of CaUC11G211440 vs. ExPASy TrEMBL
Match: A0A6J1FG23 (50S ribosomal protein L27, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445091 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 3.6e-85
Identity = 167/184 (90.76%), Postives = 172/184 (93.48%), Query Frame = 0


Query: 61  MSLNLVAAFTGLSLA--SSSSFLKGDFRSIQTPPNLSFSFPNTFPLTIQNAHKKGAGSTK 120
           MSLNL+ AF GLSLA  SSSSF KGDF SIQ PP LS SFP  FPLTI+NAHKKGAGSTK
Sbjct: 1   MSLNLIGAFRGLSLAPSSSSSFFKGDFGSIQLPPKLSVSFPTRFPLTIENAHKKGAGSTK 60

Query: 121 NGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 180
           NGRDSKGQRLGVKI+GDQ+AKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 61  NGRDSKGQRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120

Query: 181 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLASTDATE 240
           YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG +AQPQLVLASTDATE
Sbjct: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGTIAQPQLVLASTDATE 180

Query: 241 TNPV 243
           TNPV
Sbjct: 181 TNPV 184

[Close]

BLAST of CaUC11G211440 vs. ExPASy TrEMBL
Match: A0A0A0LQ66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406670 PE=3 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 4.7e-85
Identity = 164/182 (90.11%), Postives = 172/182 (94.51%), Query Frame = 0


Query: 61  MSLNLVAAFTGLSLASSSSFLKGDFRSIQTPPNLSFSFPNTFPLTIQNAHKKGAGSTKNG 120
           M+LNL+++F GLSLASSSSF KGDF SI T P LS SFPN FPLTI+NAHKKGAGSTKNG
Sbjct: 1   MTLNLLSSFKGLSLASSSSFFKGDFGSIHTSPKLSVSFPNIFPLTIENAHKKGAGSTKNG 60

Query: 121 RDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 180
           RDSKGQRLGVKIFGDQ+AKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG
Sbjct: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120

Query: 181 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLASTDATETN 240
           PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGI+AQPQL+LASTD  ETN
Sbjct: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLASTDDVETN 180

Query: 241 PV 243
           PV
Sbjct: 181 PV 182

[Close]

BLAST of CaUC11G211440 vs. TAIR 10
Match: AT5G40950.1 (ribosomal protein large subunit 27 )

HSP 1 Score: 252.3 bits (643), Expect = 4.4e-67
Identity = 136/196 (69.39%), Postives = 157/196 (80.10%), Query Frame = 0


Query: 58  AKAMSLNLVAAFTGLSLASSSSFLKGDFRSIQTPPNLSF-------SFPNTFPLTIQNAH 117
           A +MSLNL+ AF GLSL+S+SSFL+GD   +   P  SF       +     PLTI++AH
Sbjct: 4   ATSMSLNLIGAFKGLSLSSTSSFLRGD---LSFSPKTSFTVTLPLENLQAPIPLTIESAH 63

Query: 118 KKGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLI 177
           KKGAGSTKNGRDS GQRLGVKI+GDQ+AKPG+IIVRQRGTKFHAGKNVG+GKDHTIFSLI
Sbjct: 64  KKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLI 123

Query: 178 DGLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG---IVAQP 237
           DGLVKFEK+GPD+KK+SVYPRE+ PENPNSYRARKRE FRLQRE+KKAR+E     +  P
Sbjct: 124 DGLVKFEKFGPDRKKISVYPREIVPENPNSYRARKRENFRLQREKKKARRENYSYTLPTP 183

Query: 238 QLVL--ASTDATETNP 242
           +LVL  AS D  E NP
Sbjct: 184 ELVLASASVDDAEANP 196

[Close]

BLAST of CaUC11G211440 vs. TAIR 10
Match: AT2G16930.2 (Ribosomal protein L27 family protein )

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-19
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 109 AHKKGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 168
           A KK AGSTKNGRDS  + LGVK FG +   PG+IIVRQRGT+FH G  VG+GKDHT+F+
Sbjct: 47  ATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 106

Query: 169 LIDGLVKFEK 179
           L +G V+FEK
Sbjct: 107 LKEGRVRFEK 116

[Close]

BLAST of CaUC11G211440 vs. TAIR 10
Match: AT2G16930.1 (Ribosomal protein L27 family protein )

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-19
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 109 AHKKGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 168
           A KK AGSTKNGRDS  + LGVK FG +   PG+IIVRQRGT+FH G  VG+GKDHT+F+
Sbjct: 47  ATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 106

Query: 169 LIDGLVKFEK 179
           L +G V+FEK
Sbjct: 107 LKEGRVRFEK 116

[Close]

BLAST of CaUC11G211440 vs. TAIR 10
Match: AT2G16930.3 (Ribosomal protein L27 family protein )

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-19
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 109 AHKKGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 168
           A KK AGSTKNGRDS  + LGVK FG +   PG+IIVRQRGT+FH G  VG+GKDHT+F+
Sbjct: 47  ATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 106

Query: 169 LIDGLVKFEK 179
           L +G V+FEK
Sbjct: 107 LKEGRVRFEK 116

[Close]

BLAST of CaUC11G211440 vs. TAIR 10
Match: AT5G15220.1 (Ribosomal protein L27 family protein )

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-19
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 109 AHKKGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 168
           A KK AGSTKNGRDS  + LGVK FG +   PG+IIVRQRGT+FH G  VG+GKDHT+F+
Sbjct: 47  ATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 106

Query: 169 LIDGLVKFEK 179
           L +G V+FEK
Sbjct: 107 LKEGRVRFEK 116

The following BLAST results are available for this feature:

BLAST of CaUC11G211440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884234.1	1.7e-89	95.05	50S ribosomal protein L27, chloroplastic [Benincasa hispida]	[more]
XP_008441337.1	4.2e-88	92.86	PREDICTED: 50S ribosomal protein L27, chloroplastic [Cucumis melo]	[more]
KAG7015950.1	5.2e-86	91.35	50S ribosomal protein L27, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_023550670.1	1.5e-85	91.30	50S ribosomal protein L27, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023550...	[more]
XP_022133707.1	3.3e-85	90.27	50S ribosomal protein L27, chloroplastic [Momordica charantia]	[more]

BLAST of CaUC11G211440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P30155	2.7e-69	80.36	50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL27 P...	[more]
P82190	1.7e-68	73.94	50S ribosomal protein L27, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL27 P...	[more]
Q9FLN4	6.2e-66	69.39	50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
O65037	2.1e-61	69.19	50S ribosomal protein L27, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]
A6Q4D3	6.0e-29	71.43	50S ribosomal protein L27 OS=Nitratiruptor sp. (strain SB155-2) OX=387092 GN=rpm...	[more]

BLAST of CaUC11G211440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B381	2.0e-88	92.86	50S ribosomal protein L27, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485482...	[more]
A0A6J1BXH1	1.6e-85	90.27	50S ribosomal protein L27, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1K388	2.1e-85	90.76	50S ribosomal protein L27, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FG23	3.6e-85	90.76	50S ribosomal protein L27, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A0A0LQ66	4.7e-85	90.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406670 PE=3 SV=1	[more]

BLAST of CaUC11G211440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40950.1	4.4e-67	69.39	ribosomal protein large subunit 27	[more]
AT2G16930.2	2.0e-19	65.71	Ribosomal protein L27 family protein	[more]
AT2G16930.1	2.0e-19	65.71	Ribosomal protein L27 family protein	[more]
AT2G16930.3	2.0e-19	65.71	Ribosomal protein L27 family protein	[more]
AT5G15220.1	2.0e-19	65.71	Ribosomal protein L27 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 201..221
None	No IPR available	GENE3D	2.40.50.100		coord: 113..222 e-value: 6.3E-29 score: 102.2
None	No IPR available	PANTHER	PTHR15893:SF0	39S RIBOSOMAL PROTEIN L27, MITOCHONDRIAL	coord: 82..237
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 109..190
IPR001684	Ribosomal protein L27	PRINTS	PR00063	RIBOSOMALL27	coord: 111..135 score: 66.77 coord: 136..160 score: 62.46 coord: 161..185 score: 49.23
IPR001684	Ribosomal protein L27	PFAM	PF01016	Ribosomal_L27	coord: 109..188 e-value: 7.8E-36 score: 122.0
IPR001684	Ribosomal protein L27	TIGRFAM	TIGR00062	TIGR00062	coord: 108..188 e-value: 2.5E-36 score: 121.6
IPR001684	Ribosomal protein L27	PANTHER	PTHR15893	RIBOSOMAL PROTEIN L27	coord: 82..237
IPR001684	Ribosomal protein L27	HAMAP	MF_00539	Ribosomal_L27	coord: 108..191 score: 27.266109
IPR018261	Ribosomal protein L27, conserved site	PROSITE	PS00831	RIBOSOMAL_L27	coord: 141..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC11G211440.1	CaUC11G211440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function	GO:0003735	structural constituent of ribosome