CaUC11G211350 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC11G211350
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr11: 23901324 .. 23901629 (+)
RNA-Seq ExpressionCaUC11G211350
SyntenyCaUC11G211350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCAAGATGTAGAGCAAGAGGCCTTGTGAAGGGCATGTTGGGTCCTCTCCATGGGGAAGCTATGGCTGGCAGCAGAAAGACGACGACAAGCACGTCAAACGCTTCGTCGTGTTCGAGTCATGTTTCGTTTATGGTTCATCACCAAGAAAGAGCGGTTCATGATCAAACCATGAATAATGTTCACGAGGCGAACTTTTGGAACCTTTACGGCGTCGGTGTGGATGAACATATCGATTGGAAGGCCGCCATGTACATATCATCAGTGCAAGAACGCTTTAAACTTGAGGGCTTAATCAATTGA

mRNA sequence

ATGGATTCAAGATGTAGAGCAAGAGGCCTTGTGAAGGGCATGTTGGGTCCTCTCCATGGGGAAGCTATGGCTGGCAGCAGAAAGACGACGACAAGCACGTCAAACGCTTCGTCGTGTTCGAGTCATGTTTCGTTTATGGTTCATCACCAAGAAAGAGCGGTTCATGATCAAACCATGAATAATGTTCACGAGGCGAACTTTTGGAACCTTTACGGCGTCGGTGTGGATGAACATATCGATTGGAAGGCCGCCATGTACATATCATCAGTGCAAGAACGCTTTAAACTTGAGGGCTTAATCAATTGA

Coding sequence (CDS)

ATGGATTCAAGATGTAGAGCAAGAGGCCTTGTGAAGGGCATGTTGGGTCCTCTCCATGGGGAAGCTATGGCTGGCAGCAGAAAGACGACGACAAGCACGTCAAACGCTTCGTCGTGTTCGAGTCATGTTTCGTTTATGGTTCATCACCAAGAAAGAGCGGTTCATGATCAAACCATGAATAATGTTCACGAGGCGAACTTTTGGAACCTTTACGGCGTCGGTGTGGATGAACATATCGATTGGAAGGCCGCCATGTACATATCATCAGTGCAAGAACGCTTTAAACTTGAGGGCTTAATCAATTGA

Protein sequence

MDSRCRARGLVKGMLGPLHGEAMAGSRKTTTSTSNASSCSSHVSFMVHHQERAVHDQTMNNVHEANFWNLYGVGVDEHIDWKAAMYISSVQERFKLEGLIN
Homology
BLAST of CaUC11G211350 vs. NCBI nr
Match: KAA0056544.1 (hypothetical protein E6C27_scaffold288G00460 [Cucumis melo var. makuwa] >TYK02718.1 hypothetical protein E5676_scaffold1154G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 171.0 bits (432), Expect = 5.2e-39
Identity = 86/111 (77.48%), Postives = 90/111 (81.08%), Query Frame = 0

Query: 1   MDSRCRARGLVKGMLGPLHGEAMAGSRKTTTSTSNASSCSSHVSFMVHHQERA------- 60
           MDSRCRARGLVKGM+GPLHGEAM GSRK   +TSNAS CSSH+SF VHHQER        
Sbjct: 1   MDSRCRARGLVKGMVGPLHGEAMTGSRKMAPTTSNASLCSSHISFTVHHQERVMMAPSNR 60

Query: 61  ---VHDQTMNNVHEANFWNLYGVGVDEHIDWKAAMYISSVQERFKLEGLIN 102
              VHDQ MNNVHEA  WNLYGVGVDEHID KAA+YISSVQERFKLEGLIN
Sbjct: 61  RVLVHDQAMNNVHEATLWNLYGVGVDEHIDRKAALYISSVQERFKLEGLIN 111

BLAST of CaUC11G211350 vs. NCBI nr
Match: KAE8652260.1 (hypothetical protein Csa_022307 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 2.3e-34
Identity = 81/105 (77.14%), Postives = 86/105 (81.90%), Query Frame = 0

Query: 7   ARGLVKGMLGPLHGEAMAGSR-KTTTSTSNASSCSSHVSFMVHHQERA---------VHD 66
           ARGLVKGM+GPLHGEAM GSR K T +TSNAS CSSH+SF VHHQERA         VHD
Sbjct: 122 ARGLVKGMVGPLHGEAMTGSRSKITPTTSNASLCSSHISFTVHHQERALMAPSNHRVVHD 181

Query: 67  QTMNNVHEANFWNLYGVGVDEHIDWKAAMYISSVQERFKLEGLIN 102
           Q MNNVHEA  WNLYGVGVDEHID KA++YISSVQERFKLEGLIN
Sbjct: 182 QAMNNVHEATLWNLYGVGVDEHIDRKASLYISSVQERFKLEGLIN 226

BLAST of CaUC11G211350 vs. NCBI nr
Match: KAG6578363.1 (hypothetical protein SDJN03_22811, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.5 bits (332), Expect = 2.0e-27
Identity = 76/112 (67.86%), Postives = 78/112 (69.64%), Query Frame = 0

Query: 1   MDSRCRARGLVKGMLGPLHGEAMAGSRKTTTSTSNASSCSSHVSFMVHHQERA------- 60
           MD+RCRARGLVKGMLGPLHGE MA             SCSSHVSFMVH QERA       
Sbjct: 1   MDARCRARGLVKGMLGPLHGEGMA-------------SCSSHVSFMVHRQERAAMPPSNQ 60

Query: 61  --VHDQTMNNVHEANFWNLYGVG--VDEHIDWKAAMYISSVQERFKLEGLIN 102
             VHDQ MNNV EANF N  G G   DEHID KAAMYISSVQERF+LEGLIN
Sbjct: 61  RVVHDQAMNNVQEANFRNPQGGGGFADEHIDRKAAMYISSVQERFRLEGLIN 99

BLAST of CaUC11G211350 vs. NCBI nr
Match: KAG6602687.1 (hypothetical protein SDJN03_07920, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118.6 bits (296), Expect = 3.1e-23
Identity = 74/113 (65.49%), Postives = 78/113 (69.03%), Query Frame = 0

Query: 1   MDSRCR-ARGLVKGMLGPLHGEAMAGSRKT--TTSTSNASSCSSHVSFMVHHQERA---- 60
           MDSRCR AR LV       HGEAMA SR T  T +  NASSCS HVSFMVHHQERA    
Sbjct: 1   MDSRCRSARPLVP------HGEAMASSRNTKPTATLLNASSCSCHVSFMVHHQERAKMAS 60

Query: 61  -----VHDQTMNNVHEANFWNLYGVGVDEHIDWKAAMYISSVQERFKLEGLIN 102
                VH+    NVHEA FWN YGV VDEHID KAAMYISSVQERF+LEG I+
Sbjct: 61  SNQRVVHEAM--NVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGSIS 105

BLAST of CaUC11G211350 vs. NCBI nr
Match: PON95398.1 (hypothetical protein TorRG33x02_089200 [Trema orientale])

HSP 1 Score: 61.6 bits (148), Expect = 4.4e-06
Identity = 44/115 (38.26%), Postives = 61/115 (53.04%), Query Frame = 0

Query: 1   MDSRCRARGLVKGMLGPLHGEAMAGSRKTTTST--------SNASSCSSHVSFMVHHQ-- 60
           M+S  + RG +KG L P +  A   S  TTT+         S +S  ++ V F+VH    
Sbjct: 1   MESNRKRRGFMKGKLMPFYRAAKPNSSTTTTTVQYTSKVKPSQSSPSAASVGFLVHQDYV 60

Query: 61  --------ERAVHDQTMNNVHEANFWNLYGVGVDEHIDWKAAMYISSVQERFKLE 98
                      +  ++ ++V + +  NLYGV VDE +D KAA YISSVQERFKLE
Sbjct: 61  IAQPKPKISFILPPESRDSVVQLD--NLYGVAVDESVDSKAASYISSVQERFKLE 113

BLAST of CaUC11G211350 vs. ExPASy TrEMBL
Match: A0A5A7UMY1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154G00160 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.5e-39
Identity = 86/111 (77.48%), Postives = 90/111 (81.08%), Query Frame = 0

Query: 1   MDSRCRARGLVKGMLGPLHGEAMAGSRKTTTSTSNASSCSSHVSFMVHHQERA------- 60
           MDSRCRARGLVKGM+GPLHGEAM GSRK   +TSNAS CSSH+SF VHHQER        
Sbjct: 1   MDSRCRARGLVKGMVGPLHGEAMTGSRKMAPTTSNASLCSSHISFTVHHQERVMMAPSNR 60

Query: 61  ---VHDQTMNNVHEANFWNLYGVGVDEHIDWKAAMYISSVQERFKLEGLIN 102
              VHDQ MNNVHEA  WNLYGVGVDEHID KAA+YISSVQERFKLEGLIN
Sbjct: 61  RVLVHDQAMNNVHEATLWNLYGVGVDEHIDRKAALYISSVQERFKLEGLIN 111

BLAST of CaUC11G211350 vs. ExPASy TrEMBL
Match: A0A0A0LQT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406070 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.6e-39
Identity = 87/111 (78.38%), Postives = 92/111 (82.88%), Query Frame = 0

Query: 1   MDSRCRARGLVKGMLGPLHGEAMAGSR-KTTTSTSNASSCSSHVSFMVHHQERA------ 60
           MDSRCRARGLVKGM+GPLHGEAM GSR K T +TSNAS CSSH+SF VHHQERA      
Sbjct: 1   MDSRCRARGLVKGMVGPLHGEAMTGSRSKITPTTSNASLCSSHISFTVHHQERALMAPSN 60

Query: 61  ---VHDQTMNNVHEANFWNLYGVGVDEHIDWKAAMYISSVQERFKLEGLIN 102
              VHDQ MNNVHEA  WNLYGVGVDEHID KA++YISSVQERFKLEGLIN
Sbjct: 61  HRVVHDQAMNNVHEATLWNLYGVGVDEHIDRKASLYISSVQERFKLEGLIN 111

BLAST of CaUC11G211350 vs. ExPASy TrEMBL
Match: A0A2P5FC89 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_089200 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.1e-06
Identity = 44/115 (38.26%), Postives = 61/115 (53.04%), Query Frame = 0

Query: 1   MDSRCRARGLVKGMLGPLHGEAMAGSRKTTTST--------SNASSCSSHVSFMVHHQ-- 60
           M+S  + RG +KG L P +  A   S  TTT+         S +S  ++ V F+VH    
Sbjct: 1   MESNRKRRGFMKGKLMPFYRAAKPNSSTTTTTVQYTSKVKPSQSSPSAASVGFLVHQDYV 60

Query: 61  --------ERAVHDQTMNNVHEANFWNLYGVGVDEHIDWKAAMYISSVQERFKLE 98
                      +  ++ ++V + +  NLYGV VDE +D KAA YISSVQERFKLE
Sbjct: 61  IAQPKPKISFILPPESRDSVVQLD--NLYGVAVDESVDSKAASYISSVQERFKLE 113

BLAST of CaUC11G211350 vs. ExPASy TrEMBL
Match: A0A2P5W1Z7 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A07G248400v1 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.1e-05
Identity = 44/112 (39.29%), Postives = 61/112 (54.46%), Query Frame = 0

Query: 1   MDSRCRARGLVKGMLGPLHG--EAMAGSRKTTTSTSN-ASSCSSHVSFMVHH-----QER 60
           MDS  + RG +KG L PL+   +  AG + T  +  N  SS ++ V F VH      Q +
Sbjct: 1   MDSNRKGRGFIKGKLAPLYRAVKPTAGVQCTNKAKPNQGSSTTASVGFRVHRDYMISQPK 60

Query: 61  AVH-----DQTMNNVHEANFWNLYGVGVDEHIDWKAAMYISSVQERFKLEGL 100
            +      D+   N+ + +  N +GV  DE +D KAA YISSV+ERFKLE L
Sbjct: 61  KISFVVPADKNRENLSQID--NFFGVVGDESVDIKAATYISSVRERFKLEKL 110

BLAST of CaUC11G211350 vs. ExPASy TrEMBL
Match: A0A061EDX7 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_017245 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.1e-05
Identity = 43/108 (39.81%), Postives = 57/108 (52.78%), Query Frame = 0

Query: 3   SRCRARGLVKGMLGPLH---GEAMAGSRKTTTSTSNASSCSSHVSFMVHH-----QERAV 62
           S  + RG +KG L P +     A A  + TT    N +S ++ VSF VH      Q + V
Sbjct: 5   SNRKRRGFIKGKLAPFYRAAKPAAAAMQYTTKVMPNQTSTTASVSFRVHQDYMVSQPKQV 64

Query: 63  H-----DQTMNNVHEANFWNLYGVGVDEHIDWKAAMYISSVQERFKLE 98
                 D+   N+ + +  N +GV  DE +D KAA YISSVQERFKLE
Sbjct: 65  SFILPADKNRENLSQID--NFFGVAGDESVDIKAASYISSVQERFKLE 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0056544.15.2e-3977.48hypothetical protein E6C27_scaffold288G00460 [Cucumis melo var. makuwa] >TYK0271... [more]
KAE8652260.12.3e-3477.14hypothetical protein Csa_022307 [Cucumis sativus][more]
KAG6578363.12.0e-2767.86hypothetical protein SDJN03_22811, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602687.13.1e-2365.49hypothetical protein SDJN03_07920, partial [Cucurbita argyrosperma subsp. sorori... [more]
PON95398.14.4e-0638.26hypothetical protein TorRG33x02_089200 [Trema orientale][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UMY12.5e-3977.48Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LQT59.6e-3978.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406070 PE=4 SV=1[more]
A0A2P5FC892.1e-0638.26Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_089200 PE=4 SV... [more]
A0A2P5W1Z73.1e-0539.29Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A07G248400v1 PE... [more]
A0A061EDX73.1e-0539.81Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_017245 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..37
NoneNo IPR availablePANTHERPTHR36030:SF1SUBFAMILY NOT NAMEDcoord: 1..98
NoneNo IPR availablePANTHERPTHR36030FAMILY NOT NAMEDcoord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC11G211350.1CaUC11G211350.1mRNA