CaUC11G210700 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC11G210700
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionMitochondrial transcription termination factor family protein isoform 2
LocationCiama_Chr11: 22664931 .. 22673973 (+)
RNA-Seq ExpressionCaUC11G210700
SyntenyCaUC11G210700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGAAGGCAAACCCAAAGATGGGTTATGTGGCTTTAGGCTGCAAGCAAAGGACAAGAAGATTGCTGTCTCATTTCTCAGCGTGAGCCAACCTGTGGTTGCGCATCTTCCTAATTCTCGCATTGGCTGACCCTTCTTCTTCAACCTCCGCTGCACAACCACAACTCTATACGCTTTTCATCTTCAATCCCTCAAATCTCAGGTACTTCCTCCAATTTCATCTCTATACTCCATCTGCTGGAATCCTTGTTTTGTTTGTATAATACGAACCAGCTTCTCTCAATTAGATTTGTTAACTGCTTCTTTTTCGCATTCAGTTTTTCTCAAAAGAACCTTTTGGCTTGTGCTTCACACAAACGCGCACACACAATTCAATTCAATTAAGACAATATTCAGATATAATCCCTTGAGCTCCTCCTCTTATGAATAACAAGTTCATCTTTGTATATCATGCCGATACTGCCTTTTTGAGGATGAATATGATCCACTTCTCTTAGACGAGAAAGCCACTGGTTGAACTTTTTGCTGCATGATATAGTCTTAAAACGTAGTGTCTGCATTCTTTCTGTTTACACTGGAGTATTTGCTATGAATTGTTGCCTTTACTCTGGCAGCTCCACCAACAAGATCTTGATCATGACTACCTTTTGACGACTGGCAGTGATGAGATAAACAATATGTTTGTATCAATTATCTCCTATTCTTGTGAACCTAATATGAAATTAGTCTAGTAGAAACAATAATAATAATCAAGCATAGCTCACAAACAATTTTAGCGTGTAAAAACCTCCTTAAGTGAGGAGTAAAAAGCCATAGATTGAAGTCAAAATCTCCACTATAATCATTAATGGGCTAAAATGAGTTTTCCCTAGTCCAATGGATTAAGTCCGGCTCTTTGTTTGAATGACTCATGAATGTGATTGAACTCAATCCCAAAAGTCAATGACTGCATATCAAATGCCCTCTAAGAGGCTTCCGAGGATCTCAATCACTTTTGCTTCACTTTCCATGTACTTGTGTTTTCTTCCATGAATTCTTTTCAAAGCCCTATTGTGAGCATGGCCACCAATCTTACCTGTGGAACTGAATTTGAAGAGATCCTAGTCAGCCACCTGTCTACATAGGGCGGTGGCTGCCTATTAATTTATAACATCATTGTTATTTTGGAAGTCAGAACATCACACTCTTGAATGATTTCACTATAGCCTTCAGTTAGCATATTTTTGTGGGAGCACCTATTGTTATATCTATTTTGAGGCATACTTGTAAGCTTTTAATTTTCGTTGGGTCCGTTTTATATATCAGTACTTGTCCGATTGTCTTTTATTCGAACTTCCCATGACTTTCTTCTCCTGGACTCAGAACTTGGATAAAGTTGACAATCTTAATAGACTGAAACATGATTTTGCGTGGAAACTCGTCTACTAGCTCGTTGATCAACTTTTATTGGTGGTATGGCTATTTCGAAAATACTAATGTTGGGAGATAACTATAAGTTGGAAAGTCTATCTTTGATAGAATACATCTCTTCGTTGCATTAACGCGCTTGAATCTTCTCCCTATTTGAGTGGAACTCATTGTTGGTTCAAATAAAATGGTTTAACAAAATTAATGAATTGGAGGAATTTTCTGTGAGAGATGAGCCACGTTTTATGAACGTGGTACATGTGTTATATGATAATCGCATTTTTTTAATTGGTACGGCTGGCTCTTACTAGACTTCTTAAATATGGTGCAGGGATGCTAGGAAAATCATTGGTGTCTCCCATATCAACCGTTGATTCTGCTACTCGTCTCTGTTGTTCTACTGTGAGTAATAGATTTTGCCTCATATCATGGAATACTATGTGAATAACACATCAGAGAAAAAATTTTAGGTGCAAATAAATAAGTGAGGACAATTATTTATTGACATAAGGCTTTTTGAGTAAGTTAAAAGTAAAGTCGTGGAGGCTTATGCTCGAAGTTGACAATAACATGCAATTGAGGAGATATGTGAATCTGTTGTCCTTATCAGAAAATTGTAGGAATGCAATGGGAAATAAGGAAATAAGTGTTATTCTCCTATTGTTTTGCATTGCTCAAACAATAATTTTATAAATTCTCTATTTAGGATTTTACAACTTATTCTTAATTCTCAATGCAGCGCTGCATTGCCACAGCCATATCAGATGCTGTATGTTCAAATGTAAGTTTCACCTATCATCCTGCTAAGCATATGATAAAGGATGTGAGAAGACAAACTCCCAATCCCAGGAAGTGGGAAATCCGTTCAACTACTCAAGTTGAAAGCTTGACATTAAGTGACGAGGATAGGAAGACATGGGAAACTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAACAAGATAAGATGCTTGGAAAGGCATTCGGCCACATTCATTCACCCTACTGGGGTGAAGACAGAAAGAAGGAAATTCCTAATATTCAAATTGTAAATGAAATACTGGAATATCTGAGGACACTTGGCCTTTCTAATGACGATCTTTCTAAGCTGCTCAAAAAATTCCCAGAAGCTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTATTGGACAAAGAGTGGGGAATTCAAGGCAAACCACTAAGGAATCTTCTTCTGCGTAATCCCAAGGTATTGGGTTACAATGTTGATTGTAAAGGAGACTGCATCGCAAAATGCACCAGATGCTGGGTTCGATTCTAGGTACATTTTCTTTTCAGAAATTCTTATGGAAATCATAATTCATATACATGAAGCTACCTATTTAATTTCTTGCCAAATCATGTCCGAATTACGGTTTTCAGTTATTTGGATCATTGTTTTCATTTCATAAATGTGTAATCTGTTCTTCTCTCTGTCTCTCTAATTTGTATATTCTTTTAACATAAAATTACCGAAGTTCTATCAAGATGCCTTGAACTGTTGAGAGCATATTTGGAAATGGAAAGCTACCATCTTTGTTTCATTGACTTTTGCTTCCATCCTCATATGAAAAAGTAGTTTCCATAACTTCAAACATTTCCTAAGGAGTTAGTTTGGGGAAAGCAATTGTCCATTCTTGTAAACTAAAAAACAAACAAGTTTTTAACTATAGTAGCTTATAACATATTATTATTATTTTATAAGAAATAATTTCATTGATGTATGAAATATATCCAATGGGGTAGAAAAGGGCCCCATTCAAAGGGTGTACAACAATTTGCAACAAGGAAATTTAAATTGTAATCTTAGGGGTTGTAAGTTTTTACACCAAAAGACAGCATTGTAAATAGCCAACTCTAAGACTTCTTTGGGAGATCTTTCACACTTTGGCTTTCTCGCATCCCAAAACTTGGACACGACCGCACGAACGATTCAAGACCATATGTTGTTGCTTTGAAAGGTGATCCAATAGGGTCATTCTAAGCCAGGCAATAAAATCCCCTAGGGAATCCGTTGTCCAATTAAAAGAGTGGAACAGTTCAGCCCATATATTACTGCAAAAGGACAGTGGAAAAAAAGGTGAAATTGTGTTCTGTTGCTTTTCCTTGCAGAGGCAGCACCATGGTGGGGAAAGAATAATTAAGACAAGAATGAATAACCTCCCACCATAGGAATTTGTTCTTTTCAGGGCAAGGGAGCTTCCATAACTTATTATATAAGTCCTTTTGGGCAGAAGGTCCACAAGATGACAATTGGTTCATGAGGGACTTGGTGGAGAAGAAACCCATGCTTTCAAGTTGCCAAGACCAAAAATCCGGTTGGGCAGTAAGTTGGATGCTAGGGACGAAGTGTGTAGAACCGGCCCATTCGGTGATCTCATCATCTTTAAGAATCTTCTGAAGTTTAAGGCCCAAGATCCTGTCAATTGGTTCCAAACCTCTTCAATTGTGGCAGCTTTGGACCCGGCAATGGCAAAGATGAGGAAGCATTGTTTGAGGGGGGACAGAACAATCCATAAATCAGACCAAAAAGCCGTGGAGGAGCCATTACCAACTCTACAAAGGGTGTTTTGTTTCATAATATGCTGCCAAGGACTGTTAGATGAAACGTTGCCATTGTTGGATGGTTTTTTTTTTAATCAAAATGACAAGATTTTTTTTATTTTTTTATTTTTTATTTTTTTTTGCCAAGGACTGTTAGATGAAACGTTGCCATTGTTGGATGGTTTTTTTTAATCAAAATGACAAGATTTTTTTTTTTTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN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mRNA sequence

GGTGAAGGCAAACCCAAAGATGGGTTATGTGGCTTTAGGCTGCAAGCAAAGGACAAGAAGATTGCTGTCTCATTTCTCAGCGTGAGCCAACCTGTGGTTGCGCATCTTCCTAATTCTCGCATTGGCTGACCCTTCTTCTTCAACCTCCGCTGCACAACCACAACTCTATACGCTTTTCATCTTCAATCCCTCAAATCTCAGGGATGCTAGGAAAATCATTGGTGTCTCCCATATCAACCGTTGATTCTGCTACTCGTCTCTGTTGTTCTACTCGCTGCATTGCCACAGCCATATCAGATGCTGTATGTTCAAATGTAAGTTTCACCTATCATCCTGCTAAGCATATGATAAAGGATGTGAGAAGACAAACTCCCAATCCCAGGAAGTGGGAAATCCGTTCAACTACTCAAGTTGAAAGCTTGACATTAAGTGACGAGGATAGGAAGACATGGGAAACTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAACAAGATAAGATGCTTGGAAAGGCATTCGGCCACATTCATTCACCCTACTGGGGTGAAGACAGAAAGAAGGAAATTCCTAATATTCAAATTGTAAATGAAATACTGGAATATCTGAGGACACTTGGCCTTTCTAATGACGATCTTTCTAAGCTGCTCAAAAAATTCCCAGAAGCTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTATTGGACAAAGAGTGGGGAATTCAAGGCAAACCACTAAGGAATCTTCTTCTGCGTAATCCCAAGAGCTATAATGGGTCTCAATCTAAGGTTGAATATTCCCAAAAGATAGGGGCATTTGGGCTTATTGCCATGGGTCTTGAGGCGAGCATAGCAAGGGCAAGCTTGGTGGTTGCCGTAAGTGCCGGGCGGAACGCAGTGGCAACGACTGCAGCAAGTTCCACAAGCACGCAAACATATCTTCTTTCTGAACACTTTACTACATCTCCTTGA

Coding sequence (CDS)

ATGCTAGGAAAATCATTGGTGTCTCCCATATCAACCGTTGATTCTGCTACTCGTCTCTGTTGTTCTACTCGCTGCATTGCCACAGCCATATCAGATGCTGTATGTTCAAATGTAAGTTTCACCTATCATCCTGCTAAGCATATGATAAAGGATGTGAGAAGACAAACTCCCAATCCCAGGAAGTGGGAAATCCGTTCAACTACTCAAGTTGAAAGCTTGACATTAAGTGACGAGGATAGGAAGACATGGGAAACTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAACAAGATAAGATGCTTGGAAAGGCATTCGGCCACATTCATTCACCCTACTGGGGTGAAGACAGAAAGAAGGAAATTCCTAATATTCAAATTGTAAATGAAATACTGGAATATCTGAGGACACTTGGCCTTTCTAATGACGATCTTTCTAAGCTGCTCAAAAAATTCCCAGAAGCTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTATTGGACAAAGAGTGGGGAATTCAAGGCAAACCACTAAGGAATCTTCTTCTGCGTAATCCCAAGAGCTATAATGGGTCTCAATCTAAGGTTGAATATTCCCAAAAGATAGGGGCATTTGGGCTTATTGCCATGGGTCTTGAGGCGAGCATAGCAAGGGCAAGCTTGGTGGTTGCCGTAAGTGCCGGGCGGAACGCAGTGGCAACGACTGCAGCAAGTTCCACAAGCACGCAAACATATCTTCTTTCTGAACACTTTACTACATCTCCTTGA

Protein sequence

MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPKSYNGSQSKVEYSQKIGAFGLIAMGLEASIARASLVVAVSAGRNAVATTAASSTSTQTYLLSEHFTTSP
Homology
[Close]
BLAST of CaUC11G210700 vs. NCBI nr
Match: KAA0037010.1 (Mitochondrial transcription termination factor family protein isoform 2 [Cucumis melo var. makuwa] >TYK06641.1 Mitochondrial transcription termination factor family protein isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 448.7 bits (1153), Expect = 3.3e-122
Identity = 230/261 (88.12%), Postives = 240/261 (91.95%), Query Frame = 0 

Query: 1   MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPR 60
           MLGKSL SPIST+DSATR CCSTRC ATAISDAVCSNVSF+YHPAKH IK VRRQ P PR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPR 60

Query: 61  KWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KWE+ S+TQVESL LSDED+KTWE CRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 121 KKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQ 180
           KK++PNI+IVN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 KKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 181 GKPLRNLLLRNPKSYNGSQSKVEYSQKIGAFGLIAMGLEASIARASLVVAVSAGRNAVAT 240
           GK LRNLLLRNPKSYNGSQS VEYSQKIGA GLIAMG EASIARASLVVAVSAGR+AV  
Sbjct: 181 GKSLRNLLLRNPKSYNGSQSMVEYSQKIGALGLIAMGPEASIARASLVVAVSAGRDAVTP 240

Query: 241 TAASSTSTQTYLLSEHFTTSP 262
           TAAS TST TYLLSEHF  SP
Sbjct: 241 TAASPTSTHTYLLSEHFAASP 261

[Close]
BLAST of CaUC11G210700 vs. NCBI nr
Match: XP_038885056.1 (uncharacterized protein LOC120075592 [Benincasa hispida] >XP_038885057.1 uncharacterized protein LOC120075592 [Benincasa hispida])

HSP 1 Score: 355.1 bits (910), Expect = 5.0e-94
Identity = 176/193 (91.19%), Postives = 181/193 (93.78%), Query Frame = 0 

Query: 1   MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPR 60
           MLGKSLVSPIST+DSATR CCSTR IATAISDA  SNVSF+YHPAKHMIKDVRRQTP P 
Sbjct: 1   MLGKSLVSPISTIDSATRFCCSTRSIATAISDAARSNVSFSYHPAKHMIKDVRRQTPYPS 60

Query: 61  KWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KWEI STTQVESLTLSDEDRKTWE CRQALSVFSFSVEEQDKMLGKAF HIHSPYWGEDR
Sbjct: 61  KWEICSTTQVESLTLSDEDRKTWEACRQALSVFSFSVEEQDKMLGKAFSHIHSPYWGEDR 120

Query: 121 KKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQ 180
           KKE+PNI+ VN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 KKEVPNIETVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 181 GKPLRNLLLRNPK 194
           GK LRNLLLRNPK
Sbjct: 181 GKSLRNLLLRNPK 193

[Close]
BLAST of CaUC11G210700 vs. NCBI nr
Match: XP_008441218.1 (PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo] >XP_008441219.1 PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo] >XP_008441220.1 PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo])

HSP 1 Score: 354.4 bits (908), Expect = 8.6e-94
Identity = 172/193 (89.12%), Postives = 181/193 (93.78%), Query Frame = 0 

Query: 1   MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPR 60
           MLGKSL SPIST+DSATR CCSTRC ATAISDAVCSNVSF+YHPAKH IK VRRQ P PR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPR 60

Query: 61  KWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KWE+ S+TQVESL LSDED+KTWE CRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 121 KKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQ 180
           KK++PNI+IVN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 KKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 181 GKPLRNLLLRNPK 194
           GK LRNLLLRNPK
Sbjct: 181 GKSLRNLLLRNPK 193

[Close]
BLAST of CaUC11G210700 vs. NCBI nr
Match: XP_004138649.1 (uncharacterized protein LOC101218603 isoform X2 [Cucumis sativus] >XP_031737011.1 uncharacterized protein LOC101218603 isoform X2 [Cucumis sativus])

HSP 1 Score: 344.7 bits (883), Expect = 6.8e-91
Identity = 169/193 (87.56%), Postives = 179/193 (92.75%), Query Frame = 0 

Query: 1   MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPR 60
           MLGKSL SPIST+DSATR CCSTRC ATAISDAVCS+VSF+ H AKH IK VRRQ P PR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60

Query: 61  KWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KWEI S+TQVESL LSDED+KTWE CRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 121 KKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQ 180
           +K++PNI+IVN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 181 GKPLRNLLLRNPK 194
           GK LRNLLLRNPK
Sbjct: 181 GKSLRNLLLRNPK 193

[Close]
BLAST of CaUC11G210700 vs. NCBI nr
Match: XP_011649898.1 (uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus] >XP_011649900.1 uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus] >XP_031737008.1 uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus] >XP_031737009.1 uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus] >KAE8652244.1 hypothetical protein Csa_021907 [Cucumis sativus])

HSP 1 Score: 344.7 bits (883), Expect = 6.8e-91
Identity = 169/193 (87.56%), Postives = 179/193 (92.75%), Query Frame = 0 

Query: 1   MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPR 60
           MLGKSL SPIST+DSATR CCSTRC ATAISDAVCS+VSF+ H AKH IK VRRQ P PR
Sbjct: 4   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 63

Query: 61  KWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KWEI S+TQVESL LSDED+KTWE CRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 64  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 123

Query: 121 KKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQ 180
           +K++PNI+IVN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 124 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 183

Query: 181 GKPLRNLLLRNPK 194
           GK LRNLLLRNPK
Sbjct: 184 GKSLRNLLLRNPK 196

[Close]
BLAST of CaUC11G210700 vs. ExPASy TrEMBL
Match: A0A5A7T0X2 (Mitochondrial transcription termination factor family protein isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001190 PE=3 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 1.6e-122
Identity = 230/261 (88.12%), Postives = 240/261 (91.95%), Query Frame = 0 

Query: 1   MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPR 60
           MLGKSL SPIST+DSATR CCSTRC ATAISDAVCSNVSF+YHPAKH IK VRRQ P PR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPR 60

Query: 61  KWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KWE+ S+TQVESL LSDED+KTWE CRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 121 KKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQ 180
           KK++PNI+IVN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 KKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 181 GKPLRNLLLRNPKSYNGSQSKVEYSQKIGAFGLIAMGLEASIARASLVVAVSAGRNAVAT 240
           GK LRNLLLRNPKSYNGSQS VEYSQKIGA GLIAMG EASIARASLVVAVSAGR+AV  
Sbjct: 181 GKSLRNLLLRNPKSYNGSQSMVEYSQKIGALGLIAMGPEASIARASLVVAVSAGRDAVTP 240

Query: 241 TAASSTSTQTYLLSEHFTTSP 262
           TAAS TST TYLLSEHF  SP
Sbjct: 241 TAASPTSTHTYLLSEHFAASP 261

[Close]
BLAST of CaUC11G210700 vs. ExPASy TrEMBL
Match: A0A1S3B2X0 (uncharacterized protein LOC103485418 OS=Cucumis melo OX=3656 GN=LOC103485418 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 4.1e-94
Identity = 172/193 (89.12%), Postives = 181/193 (93.78%), Query Frame = 0 

Query: 1   MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPR 60
           MLGKSL SPIST+DSATR CCSTRC ATAISDAVCSNVSF+YHPAKH IK VRRQ P PR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPR 60

Query: 61  KWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KWE+ S+TQVESL LSDED+KTWE CRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 121 KKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQ 180
           KK++PNI+IVN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 KKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 181 GKPLRNLLLRNPK 194
           GK LRNLLLRNPK
Sbjct: 181 GKSLRNLLLRNPK 193

[Close]
BLAST of CaUC11G210700 vs. ExPASy TrEMBL
Match: A0A0A0LQN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G402090 PE=3 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 3.3e-91
Identity = 169/193 (87.56%), Postives = 179/193 (92.75%), Query Frame = 0 

Query: 1   MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPR 60
           MLGKSL SPIST+DSATR CCSTRC ATAISDAVCS+VSF+ H AKH IK VRRQ P PR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60

Query: 61  KWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KWEI S+TQVESL LSDED+KTWE CRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 121 KKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQ 180
           +K++PNI+IVN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 181 GKPLRNLLLRNPK 194
           GK LRNLLLRNPK
Sbjct: 181 GKSLRNLLLRNPK 193

[Close]
BLAST of CaUC11G210700 vs. ExPASy TrEMBL
Match: A0A6J1JTP6 (uncharacterized protein LOC111489650 OS=Cucurbita maxima OX=3661 GN=LOC111489650 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 5.2e-89
Identity = 167/193 (86.53%), Postives = 176/193 (91.19%), Query Frame = 0 

Query: 1   MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPR 60
           MLGKSLVSPISTVDS TRLC ST CI TA S AVCSNVSF+Y PAK+MI DVRRQ+P PR
Sbjct: 1   MLGKSLVSPISTVDSVTRLCFSTPCIGTAKSGAVCSNVSFSYQPAKYMIMDVRRQSPYPR 60

Query: 61  KWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KWEI ST+QVESL LSD+D+KTWE CRQALS+FSFS EEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEIHSTSQVESLVLSDDDKKTWEACRQALSMFSFSDEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 121 KKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQ 180
           KKE+PNI  VNEILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLL+KEWGIQ
Sbjct: 121 KKEVPNIDTVNEILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLEKEWGIQ 180

Query: 181 GKPLRNLLLRNPK 194
           GK LRNLLLRNPK
Sbjct: 181 GKSLRNLLLRNPK 193

[Close]
BLAST of CaUC11G210700 vs. ExPASy TrEMBL
Match: A0A6J1FK31 (uncharacterized protein LOC111444935 OS=Cucurbita moschata OX=3662 GN=LOC111444935 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 5.2e-89
Identity = 167/193 (86.53%), Postives = 176/193 (91.19%), Query Frame = 0 

Query: 1   MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPR 60
           MLGKSLVSPISTVDS TRLC ST CI TA S+AVCSNVSF+Y PAK+MI DVRRQ+P PR
Sbjct: 1   MLGKSLVSPISTVDSVTRLCFSTPCIGTAKSEAVCSNVSFSYQPAKYMIMDVRRQSPYPR 60

Query: 61  KWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120
           KWEI ST QVESL LSDED+KTWE CRQALS+FSFS EEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEIHSTAQVESLVLSDEDKKTWEACRQALSMFSFSDEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 121 KKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQ 180
           KKE+PNI  VNEILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLL+KEWGIQ
Sbjct: 121 KKEVPNIDTVNEILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLEKEWGIQ 180

Query: 181 GKPLRNLLLRNPK 194
           GK LR+LLLRNPK
Sbjct: 181 GKSLRSLLLRNPK 193

[Close]
BLAST of CaUC11G210700 vs. TAIR 10
Match: AT4G09620.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 187.2 bits (474), Expect = 1.7e-47
Identity = 100/194 (51.55%), Postives = 138/194 (71.13%), Query Frame = 0 

Query: 1   MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPR 60
           M+G SL SP++T+ SA     S   + T  ++ +   ++ +YH        VR  + +  
Sbjct: 3   MVGNSLASPLATLGSAKCFRHSAVDLVT-YTNVLPLRLNSSYHGVN---GGVRTSSYSRS 62

Query: 61  KWEI-RSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGED 120
           KW +  STTQVE+   S+ED   WE C++ALS F FSVEE+DK+LGKAFGHIHSPYW E+
Sbjct: 63  KWIVFCSTTQVET---SNEDPNIWEECKEALSCFDFSVEEKDKILGKAFGHIHSPYWTEE 122

Query: 121 RKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGI 180
           R KE P ++ +N+ILE+LR+LGLS++DL K++KKFPE LGC+LE+E+K N+ +L+ +WGI
Sbjct: 123 RVKENPKVETLNQILEFLRSLGLSDEDLHKVMKKFPEVLGCSLEEEMKPNIGILENQWGI 182

Query: 181 QGKPLRNLLLRNPK 194
            GK LRNLLLRNPK
Sbjct: 183 TGKQLRNLLLRNPK 189

The following BLAST results are available for this feature:
BLAST of CaUC11G210700 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0037010.13.3e-12288.12Mitochondrial transcription termination factor family protein isoform 2 [Cucumis... [more]
XP_038885056.15.0e-9491.19uncharacterized protein LOC120075592 [Benincasa hispida] >XP_038885057.1 unchara... [more]
XP_008441218.18.6e-9489.12PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo] >XP_008441219.1 P... [more]
XP_004138649.16.8e-9187.56uncharacterized protein LOC101218603 isoform X2 [Cucumis sativus] >XP_031737011.... [more]
XP_011649898.16.8e-9187.56uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus] >XP_011649900.... [more]
BLAST of CaUC11G210700 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC11G210700 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T0X21.6e-12288.12Mitochondrial transcription termination factor family protein isoform 2 OS=Cucum... [more]
A0A1S3B2X04.1e-9489.12uncharacterized protein LOC103485418 OS=Cucumis melo OX=3656 GN=LOC103485418 PE=... [more]
A0A0A0LQN83.3e-9187.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G402090 PE=3 SV=1[more]
A0A6J1JTP65.2e-8986.53uncharacterized protein LOC111489650 OS=Cucurbita maxima OX=3661 GN=LOC111489650... [more]
A0A6J1FK315.2e-8986.53uncharacterized protein LOC111444935 OS=Cucurbita moschata OX=3662 GN=LOC1114449... [more]
BLAST of CaUC11G210700 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G09620.11.7e-4751.55Mitochondrial transcription termination factor family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10Transcription termination factor 3, mitochondrialcoord: 125..219
e-value: 1.1E-13
score: 52.9
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 132..202
e-value: 6.3E-7
score: 28.6
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 1..193
NoneNo IPR availablePANTHERPTHR13068:SF192MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 1..193

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC11G210700.1CaUC11G210700.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006353 DNA-templated transcription, termination
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016020 membrane
cellular_component GO:0009536 plastid
molecular_function GO:0003690 double-stranded DNA binding