CaUC11G209800 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC11G209800
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr11: 18575321 .. 18575705 (+)
RNA-Seq ExpressionCaUC11G209800
SyntenyCaUC11G209800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACTCATAAGCTTGTTATAATATTAGTTGTTGTCCTAGTGATATTCGCATCTTTTGTATCCACAAGTATGCTCTTAACTCATAAGTAGTCTAATTCCATAATGTTTTTTTTTTTTTTGTTAGACACACTTTTTTTTTTTGTTAGACACAACGTTTTTAAACAATGTAATCTTTGGTATCATGGCAGTGAAAGGAGACGTGTTGAACGTGCATTGTGTTCGGCCATGTTCTGAGACTTATGACGACGAGTCATGTTATAATGATTGTATCCGAGAGAATAATGGTGCTGGATTTTGTTACCCAAAGCTTCCTAGCCTTCTAGTGAAAAAGATTGTTGTTGCAATCTTTGATCCAAGCAAAGAGAAATATTTTGGTTTTTAA

mRNA sequence

ATGGCAACTCATAAGCTTGTTATAATATTAGTTGTTGTCCTAGTGATATTCGCATCTTTTGTATCCACAAACACAACGTTTTTAAACAATGTAATCTTTGGTATCATGGCAGTGAAAGGAGACGTGTTGAACGTGCATTGTGTTCGGCCATGTTCTGAGACTTATGACGACGAGTCATGTTATAATGATTGTATCCGAGAGAATAATGGTGCTGGATTTTGTTACCCAAAGCTTCCTAGCCTTCTAGTGAAAAAGATTGTTGTTGCAATCTTTGATCCAAGCAAAGAGAAATATTTTGGTTTTTAA

Coding sequence (CDS)

ATGGCAACTCATAAGCTTGTTATAATATTAGTTGTTGTCCTAGTGATATTCGCATCTTTTGTATCCACAAACACAACGTTTTTAAACAATGTAATCTTTGGTATCATGGCAGTGAAAGGAGACGTGTTGAACGTGCATTGTGTTCGGCCATGTTCTGAGACTTATGACGACGAGTCATGTTATAATGATTGTATCCGAGAGAATAATGGTGCTGGATTTTGTTACCCAAAGCTTCCTAGCCTTCTAGTGAAAAAGATTGTTGTTGCAATCTTTGATCCAAGCAAAGAGAAATATTTTGGTTTTTAA

Protein sequence

MATHKLVIILVVVLVIFASFVSTNTTFLNNVIFGIMAVKGDVLNVHCVRPCSETYDDESCYNDCIRENNGAGFCYPKLPSLLVKKIVVAIFDPSKEKYFGF
Homology
BLAST of CaUC11G209800 vs. NCBI nr
Match: KAE8651701.1 (hypothetical protein Csa_006400, partial [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 2.7e-19
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 0

Query: 28 LNNVIFGIMAVKGDVLNVHCVRPCSETYDDESCYNDCIRENNGAGFCYPKLPS 81
          LNN+IFG M  KGDVLN+HCV+PCS+TYDDESCYNDCI+EN GAGFCYPKLPS
Sbjct: 4  LNNIIFGDMIAKGDVLNMHCVQPCSDTYDDESCYNDCIKENLGAGFCYPKLPS 56

BLAST of CaUC11G209800 vs. NCBI nr
Match: KGN61228.1 (hypothetical protein Csa_006463 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-18
Identity = 53/80 (66.25%), Postives = 57/80 (71.25%), Query Frame = 0

Query: 1  MATHKLVIILVVVLVIFASFVSTNTTFLNNVIFGIMAVKGDVLNVHCVRPCSETYDDESC 60
          MAT KL  I +VVL+IFA   ST               KGDVLNVHCVRPCS+TYDDESC
Sbjct: 1  MATQKLATISIVVLMIFACIAST--------------TKGDVLNVHCVRPCSDTYDDESC 60

Query: 61 YNDCIRENNGAGFCYPKLPS 81
          YNDCI+EN GAGFCYPKLPS
Sbjct: 61 YNDCIQENLGAGFCYPKLPS 66

BLAST of CaUC11G209800 vs. NCBI nr
Match: KAE8651697.1 (hypothetical protein Csa_006343 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 1.9e-17
Identity = 51/80 (63.75%), Postives = 57/80 (71.25%), Query Frame = 0

Query: 1  MATHKLVIILVVVLVIFASFVSTNTTFLNNVIFGIMAVKGDVLNVHCVRPCSETYDDESC 60
          MAT KL  + +V+L+I A  VST               KGDVLNV+CVRPCS+TYDDESC
Sbjct: 1  MATQKLATVSIVMLMILACIVST--------------TKGDVLNVNCVRPCSDTYDDESC 60

Query: 61 YNDCIRENNGAGFCYPKLPS 81
          YNDCIREN GAGFCYPKLPS
Sbjct: 61 YNDCIRENLGAGFCYPKLPS 66

BLAST of CaUC11G209800 vs. NCBI nr
Match: KAG6586428.1 (hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.9 bits (172), Expect = 7.3e-09
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 0

Query: 1  MATHKLVIILVVVLVIFASFVSTNTTFLNNVIFGIMAVKGDVLNVHCVRPCSETYDDESC 60
          MA+ KL  +  +V+++F               +   + KGD+  + C+RPC + +DD+SC
Sbjct: 1  MASRKLFTVFAIVMMMF---------------YFASSAKGDMF-MECIRPCVDAFDDDSC 60

Query: 61 YNDCIRENNGAGFCYPKLPSLLVKK 86
          Y+DC+R N GAGFCYPKLPS+  +K
Sbjct: 61 YDDCVRANKGAGFCYPKLPSVTNEK 69

BLAST of CaUC11G209800 vs. ExPASy TrEMBL
Match: A0A0A0LHG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 8.4e-19
Identity = 53/80 (66.25%), Postives = 57/80 (71.25%), Query Frame = 0

Query: 1  MATHKLVIILVVVLVIFASFVSTNTTFLNNVIFGIMAVKGDVLNVHCVRPCSETYDDESC 60
          MAT KL  I +VVL+IFA   ST               KGDVLNVHCVRPCS+TYDDESC
Sbjct: 1  MATQKLATISIVVLMIFACIAST--------------TKGDVLNVHCVRPCSDTYDDESC 60

Query: 61 YNDCIRENNGAGFCYPKLPS 81
          YNDCI+EN GAGFCYPKLPS
Sbjct: 61 YNDCIQENLGAGFCYPKLPS 66

BLAST of CaUC11G209800 vs. ExPASy TrEMBL
Match: A0A0A0LJG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 8.4e-19
Identity = 54/80 (67.50%), Postives = 56/80 (70.00%), Query Frame = 0

Query: 1  MATHKLVIILVVVLVIFASFVSTNTTFLNNVIFGIMAVKGDVLNVHCVRPCSETYDDESC 60
          MAT KL  I +VVLVIF   VST               KGDVLNVHCVRPC +TYDDESC
Sbjct: 1  MATQKLATISIVVLVIFPCIVST--------------TKGDVLNVHCVRPCYDTYDDESC 60

Query: 61 YNDCIRENNGAGFCYPKLPS 81
          YNDCIREN GAGFCYPKLPS
Sbjct: 61 YNDCIRENLGAGFCYPKLPS 66

BLAST of CaUC11G209800 vs. ExPASy TrEMBL
Match: A0A0A0LKF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.7e-17
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0

Query: 36 MAVKGDVLNVHCVRPCSETYDDESCYNDCIRENNGAGFCYPKLPS 81
          M  KGD+LNVHCVRPCS+TYDDESCYNDCIREN GAGFCYPKLPS
Sbjct: 1  MTAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPS 45

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8651701.12.7e-1983.02hypothetical protein Csa_006400, partial [Cucumis sativus][more]
KGN61228.11.7e-1866.25hypothetical protein Csa_006463 [Cucumis sativus][more]
KAE8651697.11.9e-1763.75hypothetical protein Csa_006343 [Cucumis sativus][more]
KAG6586428.17.3e-0940.00hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LHG98.4e-1966.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1[more]
A0A0A0LJG58.4e-1967.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1[more]
A0A0A0LKF52.7e-1788.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC11G209800.1CaUC11G209800.1mRNA