CaUC11G207630 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC11G207630
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr11: 8164161 .. 8164821 (+)
RNA-Seq ExpressionCaUC11G207630
SyntenyCaUC11G207630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCCTTCTCAGAGGAGGAAGCCGTCTTGGCAATGGATTCCGTGTTCGTTAGAGCATACCGAAGTCATGTTCCTCTTGCCGCTGGTACGCCGTTCCCCCCCTCCAATCCAAGTGACTTGAGGCTGTTTGAGTCAGTTCAATCTTAGATTTCTCCGCCGGAACTTCTGCATCTTGTTTGAGTTTCTTCTTTTCCCCCTCGTAGATTGGTGCATTTTTGTTATCGAGTCTGTTTTTTTCTATTTTGATGCTTCGTTTTCATTTGCGCATGAGGAGTAACTCGATGATGTTCTCGCGATTCTCATCCTATTCCTTGATTGAAGCTGATTTGAGTTTGTTTTTTCTTTTTTGATTTGCTGTTTCTTTTCAGTAGGTGGGATTGGAAACGGCTGGACGAATCGCGACGTCAACAACGTTTGGCTTCCAAGTAAGAACAATTCGTCTTTGAATCTTTATTTTCTTTGCATTTATCATTTTCGCTTTTCGTCTTCTCGGGCATCCTTTAATTCGCCAATGGCACACGCAGCATTCTTGTCATTTTTGCTTGTTTTTTTCGAATTTCATGTTTGTTAGTGCAATTCTTAAATGAATTTGTTGTTGACTGTGCAAGTTGGATGAATTAAACCAGTGGAAGGGATTATCCGGGCGGCGGATTCCCTTATAA

mRNA sequence

TCTCCTTCTCAGAGGAGGAAGCCGTCTTGGCAATGGATTCCGTGTTCGTTAGAGCATACCGAAGTCATGTTCCTCTTGCCGCTGTCAGTTCAATCTTAGATTTCTCCGCCGGAACTTCTGCATCTTGTTTGAGTTTCTTCTTTTCCCCCTCTAACTCGATGATGTTCTCGCGATTCTCATCCTATTCCTTGATTGAAGCTGATTTGATAGGTGGGATTGGAAACGGCTGGACGAATCGCGACGTCAACAACGTTTGGCTTCCAAGTAAGAACAATTCGTCTTTGAATCTTTATTTTCTTTGCATTTATCATTTTCGCTTTTCGTCTTCTCGGGCATCCTTTAATTCGCCAATGGCACACGCAGCATTCTTGTCATTTTTGCTTTTGGATGAATTAAACCAGTGGAAGGGATTATCCGGGCGGCGGATTCCCTTATAA

Coding sequence (CDS)

ATGGATTCCGTGTTCGTTAGAGCATACCGAAGTCATGTTCCTCTTGCCGCTGTCAGTTCAATCTTAGATTTCTCCGCCGGAACTTCTGCATCTTGTTTGAGTTTCTTCTTTTCCCCCTCTAACTCGATGATGTTCTCGCGATTCTCATCCTATTCCTTGATTGAAGCTGATTTGATAGGTGGGATTGGAAACGGCTGGACGAATCGCGACGTCAACAACGTTTGGCTTCCAAGTAAGAACAATTCGTCTTTGAATCTTTATTTTCTTTGCATTTATCATTTTCGCTTTTCGTCTTCTCGGGCATCCTTTAATTCGCCAATGGCACACGCAGCATTCTTGTCATTTTTGCTTTTGGATGAATTAAACCAGTGGAAGGGATTATCCGGGCGGCGGATTCCCTTATAA

Protein sequence

MDSVFVRAYRSHVPLAAVSSILDFSAGTSASCLSFFFSPSNSMMFSRFSSYSLIEADLIGGIGNGWTNRDVNNVWLPSKNNSSLNLYFLCIYHFRFSSSRASFNSPMAHAAFLSFLLLDELNQWKGLSGRRIPL
Homology
[Close]
BLAST of CaUC11G207630 vs. NCBI nr
Match: KAG7029816.1 (Homogentisate phytyltransferase 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 98.6 bits (244), Expect = 4.3e-17
Identity = 56/113 (49.56%), Postives = 61/113 (53.98%), Query Frame = 0 

Query: 1   MDSVFVRAYRSHVPLAAVSSILDFSAGTSASCLSFFFSPSNSMMFSRFSSYSLIEADLIG 60
           MDSVFVRAYRSHV                                             +G
Sbjct: 1   MDSVFVRAYRSHV---------------------------------------------VG 60

Query: 61  GIGNGWTNRDVNNVWLPSKNNSSLNLYFLCIYHFRFSSSRASFNSPMAHAAFL 114
           GIG+GWTNRDVNNVWLPSK NS LN YFLCIY FRFSSS +SFNS +AHA F+
Sbjct: 61  GIGSGWTNRDVNNVWLPSKTNSFLNPYFLCIYRFRFSSSLSSFNSSIAHAGFV 68

[Close]
BLAST of CaUC11G207630 vs. NCBI nr
Match: XP_038889435.1 (homogentisate phytyltransferase 1, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 55.1 bits (131), Expect = 5.5e-04
Identity = 34/86 (39.53%), Postives = 37/86 (43.02%), Query Frame = 0 

Query: 1  MDSVFVRAYRSHVPLAAVSSILDFSAGTSASCLSFFFSPSNSMMFSRFSSYSLIEADLIG 60
          MDSVFVRAYRSH  LAAV                                         G
Sbjct: 1  MDSVFVRAYRSHFTLAAV-----------------------------------------G 45

Query: 61 GIGNGWTNRDVNNVWLPSKNNSSLNL 87
          G+GNGWTNR VNNVWLPS    +L +
Sbjct: 61 GVGNGWTNRGVNNVWLPSPRPGALKI 45

The following BLAST results are available for this feature:
BLAST of CaUC11G207630 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029816.14.3e-1749.56Homogentisate phytyltransferase 1, chloroplastic, partial [Cucurbita argyrosperm... [more]
XP_038889435.15.5e-0439.53homogentisate phytyltransferase 1, chloroplastic isoform X1 [Benincasa hispida][more]
BLAST of CaUC11G207630 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC11G207630 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC11G207630 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC11G207630.1CaUC11G207630.1mRNA