CaUC11G206310 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC11G206310
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionexopolygalacturonase-like
LocationCiama_Chr11: 6026525 .. 6027021 (+)
RNA-Seq ExpressionCaUC11G206310
SyntenyCaUC11G206310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTAGAGGACAATCATACTCGAAAATTTATACCTTTTATCGCAACCGTGTCGTAAATCTTCCACATCAGACCAAAACGAATGAGGATCAGTTCAATCAATCTTCCATTTTCGATTAACGACAGGTGCACGTACTAAATCAGTCTTGATTAAGCCATCGCTCGACGAAATAGCAGTTTACAACAAAACGACCCGGGACATCGAGCAAAGAGCTCCAATGTGCGTATTCGAAGCTTGTTTTAACTTAAACACAAGCATGATGTTATGGATTTAACAACACAATTAGATTTACATTGACAGGTACACCATATCCAAATGCAACTCCAAGGAATATTGCAGGCTCCTATAGATCTTATCAAAGAACATTGGATTAGTTTCCAATATATCGATCACTTTACATTGCCAAGTACAAGAGTCTTTGATGGGCAAAGAAAAGTAGATTGGAGAAAATTGATGGTGACAAAAGCTCAAAGTGCGCCAAACTTTCCACAGTAA

mRNA sequence

ATGAGTGCACGTACTAAATCAGTCTTGATTAAGCCATCGCTCGACGAAATAGCAGTTTACAACAAAACGACCCGGGACATCGAGCAAAGAGCTCCAATGTGCGTACACCATATCCAAATGCAACTCCAAGGAATATTGCAGGCTCCTATAGATCTTATCAAAGAACATTGGATTAGTTTCCAATATATCGATCACTTTACATTGCCAAGTACAAGAGTCTTTGATGGGCAAAGAAAAGTAGATTGGAGAAAATTGATGGTGACAAAAGCTCAAAGTGCGCCAAACTTTCCACAGTAA

Coding sequence (CDS)

ATGAGTGCACGTACTAAATCAGTCTTGATTAAGCCATCGCTCGACGAAATAGCAGTTTACAACAAAACGACCCGGGACATCGAGCAAAGAGCTCCAATGTGCGTACACCATATCCAAATGCAACTCCAAGGAATATTGCAGGCTCCTATAGATCTTATCAAAGAACATTGGATTAGTTTCCAATATATCGATCACTTTACATTGCCAAGTACAAGAGTCTTTGATGGGCAAAGAAAAGTAGATTGGAGAAAATTGATGGTGACAAAAGCTCAAAGTGCGCCAAACTTTCCACAGTAA

Protein sequence

MSARTKSVLIKPSLDEIAVYNKTTRDIEQRAPMCVHHIQMQLQGILQAPIDLIKEHWISFQYIDHFTLPSTRVFDGQRKVDWRKLMVTKAQSAPNFPQ
Homology
[Close]
BLAST of CaUC11G206310 vs. NCBI nr
Match: XP_038889253.1 (exopolygalacturonase-like [Benincasa hispida])

HSP 1 Score: 82.8 bits (203), Expect = 1.8e-12
Identity = 39/64 (60.94%), Postives = 44/64 (68.75%), Query Frame = 0 

Query: 34  CVHHIQMQLQGILQAPIDLIKEHWISFQYIDHFTLPSTRVFDGQRKVDWRKLMVTKAQSA 93
           C +HIQ+QL+GIL+API+LI EHWISFQYID FTL  T VFDGQ KV W K    K    
Sbjct: 80  CKNHIQIQLEGILEAPINLIGEHWISFQYIDQFTLTGTGVFDGQGKVAWGKNDCAKNSKC 139

Query: 94  PNFP 98
              P
Sbjct: 140 SKLP 143

[Close]
BLAST of CaUC11G206310 vs. NCBI nr
Match: XP_031741743.1 (LOW QUALITY PROTEIN: exopolygalacturonase [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 2.2e-10
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 34  CVHHIQMQLQGILQAPIDLIKEHWISFQYIDHFTLPSTRVFDGQRKVDWRKLMVTKAQSA 93
           C  HIQ+QLQGILQAP+DL+ ++WISFQ ID FTL    VFDGQ KV W K    K  + 
Sbjct: 62  CKSHIQIQLQGILQAPVDLVGDNWISFQNIDQFTLTGKGVFDGQGKVAWGKNDCNKNPNC 121

Query: 94  PNFP 98
              P
Sbjct: 122 AKLP 125

[Close]
BLAST of CaUC11G206310 vs. NCBI nr
Match: XP_011659855.2 (exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-10
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 34  CVHHIQMQLQGILQAPIDLIKEHWISFQYIDHFTLPSTRVFDGQRKVDWRKLMVTKAQSA 93
           C  HIQ+QLQGILQAP+DL+ ++WISFQ ID FTL    VFDGQ K+ W K    K  + 
Sbjct: 62  CKSHIQIQLQGILQAPVDLVGDNWISFQNIDQFTLTGKGVFDGQGKIAWGKNDCNKNPNC 121

Query: 94  PNFP 98
              P
Sbjct: 122 AKLP 125

[Close]
BLAST of CaUC11G206310 vs. NCBI nr
Match: XP_011656227.1 (exopolygalacturonase [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-10
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 34  CVHHIQMQLQGILQAPIDLIKEHWISFQYIDHFTLPSTRVFDGQRKVDWRKLMVTKAQSA 93
           C  HIQ+QLQGILQAP+DL+ ++WISFQ ID FTL    VFDGQ K+ W K    K  + 
Sbjct: 62  CKSHIQIQLQGILQAPVDLVGDNWISFQNIDQFTLTGQGVFDGQGKIAWGKNDCNKNPNC 121

Query: 94  PNFP 98
              P
Sbjct: 122 AKLP 125

[Close]
BLAST of CaUC11G206310 vs. NCBI nr
Match: XP_008465833.1 (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-09
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 0 

Query: 27  IEQRAPMCVHHIQMQLQGILQAPIDLIKEHWISFQYIDHFTLPSTRVFDGQRKVDWRK 85
           IE   P C + IQ+QLQGILQAP DL +++WISF+YID FTL    VFDGQ KV W K
Sbjct: 56  IELTGP-CKNRIQIQLQGILQAPADLAEDNWISFKYIDQFTLTGKGVFDGQGKVAWGK 112

[Close]
BLAST of CaUC11G206310 vs. ExPASy Swiss-Prot
Match: Q40312 (Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.3e-05
Identity = 30/73 (41.10%), Postives = 39/73 (53.42%), Query Frame = 0 

Query: 27  IEQRAPMCVHHIQMQLQGILQAPID--LIK--EHWISFQYIDHFTLPSTRVFDGQRKVDW 86
           IE + P C   I++Q+ G +QAP D  +IK  E W  F Y+DH TL    VFDGQ    +
Sbjct: 70  IELKGP-CKAPIELQVDGTIQAPADPSVIKGTEQWFKFLYMDHLTLSGKGVFDGQGATVY 129

Query: 87  RKLMVTKAQSAPN 96
           +K     A S  N
Sbjct: 130 KKAAPASAWSGKN 141

[Close]
BLAST of CaUC11G206310 vs. ExPASy TrEMBL
Match: A0A5A7VFS7 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00460 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 0 

Query: 27  IEQRAPMCVHHIQMQLQGILQAPIDLIKEHWISFQYIDHFTLPSTRVFDGQRKVDWRK 85
           IE   P C + IQ+QLQGILQAP DL +++WISF+YID FTL    VFDGQ KV W K
Sbjct: 56  IELTGP-CKNRIQIQLQGILQAPADLAEDNWISFKYIDQFTLTGKGVFDGQGKVAWGK 112

[Close]
BLAST of CaUC11G206310 vs. ExPASy TrEMBL
Match: A0A1S3CPS4 (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103503427 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 0 

Query: 27  IEQRAPMCVHHIQMQLQGILQAPIDLIKEHWISFQYIDHFTLPSTRVFDGQRKVDWRK 85
           IE   P C + IQ+QLQGILQAP DL +++WISF+YID FTL    VFDGQ KV W K
Sbjct: 56  IELTGP-CKNRIQIQLQGILQAPADLAEDNWISFKYIDQFTLTGKGVFDGQGKVAWGK 112

[Close]
BLAST of CaUC11G206310 vs. ExPASy TrEMBL
Match: A0A6J1DUC6 (exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111024096 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07
Identity = 29/51 (56.86%), Postives = 34/51 (66.67%), Query Frame = 0 

Query: 34  CVHHIQMQLQGILQAPIDLIKEHWISFQYIDHFTLPSTRVFDGQRKVDWRK 85
           C   I++QLQG +QAPIDL  E W+ F+YIDHFTL     FDGQ K  W K
Sbjct: 80  CKSPIEVQLQGTIQAPIDLTGEGWVQFKYIDHFTLSGGGTFDGQGKAAWEK 130

[Close]
BLAST of CaUC11G206310 vs. ExPASy TrEMBL
Match: A0A6J1DBN7 (exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111019009 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 29/64 (45.31%), Postives = 38/64 (59.38%), Query Frame = 0 

Query: 34  CVHHIQMQLQGILQAPIDLIKEHWISFQYIDHFTLPSTRVFDGQRKVDWRKLMVTKAQSA 93
           C   I ++ QG LQAPID   E W++F+YIDHF+L    VFDGQ K+ W K    +  + 
Sbjct: 84  CKSPIGIEFQGTLQAPIDPTGEGWVNFKYIDHFSLTGGGVFDGQGKLAWEKNDCGQNPNC 143

Query: 94  PNFP 98
             FP
Sbjct: 144 AQFP 147

[Close]
BLAST of CaUC11G206310 vs. ExPASy TrEMBL
Match: Q9MBC0 (Polygalacturonase OS=Salix gilgiana OX=75556 GN=SgPG1 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.6e-06
Identity = 32/90 (35.56%), Postives = 47/90 (52.22%), Query Frame = 0 

Query: 11  KPSLDEIAVYNKTTRDIEQRAPMCVHHIQMQLQGILQAPID---LIKEHWISFQYIDHFT 70
           KPS   I     + R +    P C   I++Q+ GIL+AP++       HW++F+YIDH T
Sbjct: 58  KPSKVRIPSGTYSLRQVTLAGP-CKSAIELQVNGILKAPVNPDQFSGGHWVNFRYIDHLT 117

Query: 71  LPSTRVFDGQRKVDWRKLMVTKAQSAPNFP 98
           L  +  FDGQ  V W K   +K ++    P
Sbjct: 118 LSGSGTFDGQGNVAWSKSTCSKNKNCEGLP 146

The following BLAST results are available for this feature:
BLAST of CaUC11G206310 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038889253.11.8e-1260.94exopolygalacturonase-like [Benincasa hispida][more]
XP_031741743.12.2e-1056.25LOW QUALITY PROTEIN: exopolygalacturonase [Cucumis sativus][more]
XP_011659855.22.9e-1054.69exopolygalacturonase-like [Cucumis sativus][more]
XP_011656227.12.9e-1054.69exopolygalacturonase [Cucumis sativus][more]
XP_008465833.12.4e-0962.07PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
BLAST of CaUC11G206310 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q403121.3e-0541.10Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1[more]
BLAST of CaUC11G206310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VFS71.2e-0962.07Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3CPS41.2e-0962.07exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103503427 PE=3 SV=1[more]
A0A6J1DUC61.1e-0756.86exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111024096 PE=3 SV... [more]
A0A6J1DBN71.6e-0645.31exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111019009 PE=3 SV... [more]
Q9MBC04.6e-0635.56Polygalacturonase OS=Salix gilgiana OX=75556 GN=SgPG1 PE=2 SV=1[more]
BLAST of CaUC11G206310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC11G206310.1CaUC11G206310.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0016798 hydrolase activity, acting on glycosyl bonds