CaUC11G205460 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC11G205460
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	50S ribosomal protein L16
Location	Ciama_Chr11: 5132016 .. 5133551 (+)
RNA-Seq Expression	CaUC11G205460
Synteny	CaUC11G205460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATATGTGCTCTTAAGTGAAAATTAGTACTTGTATGATACATGAGCTTTGAGTATGATTTTCCTATGGTCTCCGAGTTTCAAATGTTATATTTTTCTAAAGATTTTGAGTTTAGTTTCTATTTAACCAATATGTTTCAAAATGTCACCTTTGTACCCTTGAGTCATTGTGGCTTGTAAGTTTAGTTTTCTTTTGTTATAGATTTCAAGATTTTGTACTTTTACCAAGTAATTTTCTTTAATGCACACTTAGTCATATGGATTAAATTTCTATGATTTAATTTAAATGAATTATAATAATGATAATTAAACGATATTTGATTAATTTCCCATCACTATTAAAACTAACGATAAAAAAATCATACCATGATTTTTTTTTATATAGAAAAAACACATTTTAAAAAAAAAAAACAACAACTAAAGAATTACACCTTGAGACACAAGACCAACAAACCACTCAAGATAAGGAATGCTGAGAAAAGCATAACCTTGCTCCTCCAACGCCTTAGTTGCAAGTGAATGTACTAGAACACTATGACGACACCGACCATGGGAAAAGGAGACATCACCCATCTCAAGAGCACAATTTGTCGCCTCATCAATGAAAAAAATGACTTCAATCAGATCAACAAAGACGTCCTTAAGCAAGTTAACAAACCCTAGGCAGTTCGACAAAATCAAGGTATTACGAACTATAAGAGACATAATATTATTGAGACCATTATAAGTAGCCCCCGCTTCAAGAATCTTCGCCTCATTACATTCTGAAATGAAATTAAATCTAGCAATACAAACACGACCCAAGTGGTCCTGATTAACACTACCATTCAGCTTCCAAACATACGAAATCATCAAACTCAACTGACTAATCAACGATATCAATAGATTTGTTACTTAGCCCAAAATATGAAAATAATAGCTAAGAATCATCAAAACATGGAGCTTAACAAAGTATATCCACAATAGTTCCCATTCAAACATGGATCCACAAGGAATAAGAGTGAATAAAATGCATATTATTTTGTCAAATCAAATATCAACTATATTGATAATAAGAATAAAGTATAAAGTATAAATTATAAATGAACAAATCACATCAATACGTCGTCGTTCGGCCTTGTCATCATATCATATATTTCTTTCTTTTTCCCAAGACTCAAACCAGAGTTGAACAAGTGGAAGTGATCGGATTAAACAACGCCGGAAGCAGATATTTCCGCCCATTGCCACCGTTCGCATTGTAACTCGCTCCGGTGGCGCGGTCCACCAGAAGCTCCCCGGGGTATCCCGGAAAAGCTCCTTTCCCGAATATTCCGGTGCAGGCCGACGCCGCCTCCAGCGGTGCTTCCTTGGAGCCTTGATAGAACCCATTCCCGAACGGATTCGTCGCAGTTCCGGCAAGAAGACTCGCCAGGTTTATTATAATGCCGTCCATTCCCACATCCTTATTCGGCGGCACCAACGGCGGATTCTGAGGACCGTACACCGGCCGGTGAAACGGCCAAGCACACTGCCCTGGACATTGGGTCGCTGA

mRNA sequence

ATGATATATATTTCAAGATTTTGTACTTTTACCAATGATCGGATTAAACAACGCCGGAAGCAGATATTTCCGCCCATTGCCACCGTTCGCATTGTAACTCGCTCCGGTGGCGCGGTCCACCAGAAGCTCCCCGGGGTATCCCGGAAAAGCTCCTTTCCCGAATATTCCGGTGCAGGCCGACGCCGCCTCCAGCGGTGCTTCCTTGGAGCCTTGATAGAACCCATTCCCGAACGGATTCGTCGCAGTTCCGGCAAGAAGACTCGCCAGGTTTATTATAATGCCGTCCATTCCCACATCCTTATTCGGCGGCACCAACGGCGGATTCTGAGGACCGTACACCGGCCGGTGAAACGGCCAAGCACACTGCCCTGGACATTGGGTCGCTGA

Coding sequence (CDS)

ATGATATATATTTCAAGATTTTGTACTTTTACCAATGATCGGATTAAACAACGCCGGAAGCAGATATTTCCGCCCATTGCCACCGTTCGCATTGTAACTCGCTCCGGTGGCGCGGTCCACCAGAAGCTCCCCGGGGTATCCCGGAAAAGCTCCTTTCCCGAATATTCCGGTGCAGGCCGACGCCGCCTCCAGCGGTGCTTCCTTGGAGCCTTGATAGAACCCATTCCCGAACGGATTCGTCGCAGTTCCGGCAAGAAGACTCGCCAGGTTTATTATAATGCCGTCCATTCCCACATCCTTATTCGGCGGCACCAACGGCGGATTCTGAGGACCGTACACCGGCCGGTGAAACGGCCAAGCACACTGCCCTGGACATTGGGTCGCTGA

Protein sequence

MIYISRFCTFTNDRIKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVHRPVKRPSTLPWTLGR

Homology

[Close]

BLAST of CaUC11G205460 vs. NCBI nr
Match: KAB8101767.1 (hypothetical protein EE612_032745, partial [Oryza sativa])

HSP 1 Score: 91.7 bits (226), Expect = 5.1e-15
Identity = 47/114 (41.23%), Postives = 70/114 (61.40%), Query Frame = 0


Query: 15  IKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEP 74
           +++RR+++FP +  VR+V  +GG VHQ+  GV+R  +   ++ A RR LQR     L+EP
Sbjct: 24  VEERREEVFPAVRAVRVVAGAGGLVHQQRAGVARVRALAVHARARRRGLQRRAALPLVEP 83

Query: 75  IPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVHRPVKRPSTLPWTLGR 129
           + ER+   +G     V ++ VH+H+    HQRR L TVHR V+RP  LP  L R
Sbjct: 84  VAERVGHRAGHHAGHVDHHPVHAHVAAGWHQRRRLGTVHRLVERPRALPRALRR 137

[Close]

BLAST of CaUC11G205460 vs. NCBI nr
Match: BAS96821.1 (Os06g0220100, partial [Oryza sativa Japonica Group])

HSP 1 Score: 91.7 bits (226), Expect = 5.1e-15
Identity = 47/114 (41.23%), Postives = 70/114 (61.40%), Query Frame = 0


Query: 15  IKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEP 74
           +++RR+++FP +  VR+V  +GG VHQ+  GV+R  +   ++ A RR LQR     L+EP
Sbjct: 24  VEERREEVFPAVRAVRVVAGAGGLVHQQRAGVARVRALAVHARARRRGLQRRAALPLVEP 83

Query: 75  IPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVHRPVKRPSTLPWTLGR 129
           + ER+   +G     V ++ VH+H+    HQRR L TVHR V+RP  LP  L R
Sbjct: 84  VAERVGHRAGHHAGHVDHHPVHAHVAAGWHQRRRLGTVHRLVERPRALPRALRR 137

[Close]

BLAST of CaUC11G205460 vs. NCBI nr
Match: RDX60926.1 (hypothetical protein CR513_60891, partial [Mucuna pruriens])

HSP 1 Score: 89.7 bits (221), Expect = 1.9e-14
Identity = 51/114 (44.74%), Postives = 66/114 (57.89%), Query Frame = 0


Query: 13  DRIKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALI 72
           DR+   R+Q      T  +V      +HQ +  V+R   F EYSGA R RLQR     L+
Sbjct: 34  DRVPHSRQQKPATAHTHCVVASPRRFIHQNVTRVTRICPFSEYSGARRHRLQRRHRRPLV 93

Query: 73  EPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVHRPVKRPSTLPWTL 127
            PIPER+R  SG+  RQ  Y++VH  + +RR+QRR LR VHR V+ P  LP TL
Sbjct: 94  VPIPERVRHRSGQHRRQSDYHSVHPDVAVRRNQRRSLRAVHRLVEWPRALPGTL 147

[Close]

BLAST of CaUC11G205460 vs. NCBI nr
Match: GER55536.1 (50S ribosomal protein L16 [Striga asiatica])

HSP 1 Score: 85.5 bits (210), Expect = 3.6e-13
Identity = 50/115 (43.48%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 14  RIKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIE 73
           R+  RR+QI PP+  VR+V  +   V Q +  VSR  + PE+  A R RLQR     L  
Sbjct: 17  RVPHRRQQILPPVHAVRVVAGAARLVRQHVTRVSRVCARPEHPRARRHRLQRRRRRPLEV 76

Query: 74  PIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVHRPVKRPSTLPWTLGR 129
           P  E +R   G+  RQV ++ VHS++  RRHQRR LR VHR V+RP      L R
Sbjct: 77  PAVEGVRHRPGQHCRQVDHHPVHSNVAARRHQRRRLRPVHRLVERPRAETRALAR 131

[Close]

BLAST of CaUC11G205460 vs. NCBI nr
Match: KCW66564.1 (hypothetical protein EUGRSUZ_F00363 [Eucalyptus grandis])

HSP 1 Score: 82.4 bits (202), Expect = 3.1e-12
Identity = 48/113 (42.48%), Postives = 65/113 (57.52%), Query Frame = 0


Query: 14  RIKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIE 73
           RI + R Q+  P+  VR+V R    +HQ++PGV+R        GA RRRLQR    AL+ 
Sbjct: 30  RIVESRDQVLSPVHAVRVVARPRRLIHQQVPGVARVRPVTVDPGARRRRLQRRPRLALVV 89

Query: 74  PIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVHRPVKRPSTLPWTL 127
           P+ ER+R   G++  QV ++ V   I + RHQRR LR V   V+RP  LP  L
Sbjct: 90  PVRERVRGGPGEEACQVDHHPVDGDIPVGRHQRRALRAVLGLVERPRALPRAL 142

[Close]

BLAST of CaUC11G205460 vs. ExPASy TrEMBL
Match: A0A0P0WUF2 (Os06g0220100 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0220100 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.5e-15
Identity = 47/114 (41.23%), Postives = 70/114 (61.40%), Query Frame = 0


Query: 15  IKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEP 74
           +++RR+++FP +  VR+V  +GG VHQ+  GV+R  +   ++ A RR LQR     L+EP
Sbjct: 24  VEERREEVFPAVRAVRVVAGAGGLVHQQRAGVARVRALAVHARARRRGLQRRAALPLVEP 83

Query: 75  IPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVHRPVKRPSTLPWTLGR 129
           + ER+   +G     V ++ VH+H+    HQRR L TVHR V+RP  LP  L R
Sbjct: 84  VAERVGHRAGHHAGHVDHHPVHAHVAAGWHQRRRLGTVHRLVERPRALPRALRR 137

[Close]

BLAST of CaUC11G205460 vs. ExPASy TrEMBL
Match: A0A0D9WNC7 (Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.2e-15
Identity = 45/114 (39.47%), Postives = 69/114 (60.53%), Query Frame = 0


Query: 15  IKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEP 74
           I++R +Q+ P +  VR+V  +G  +H+++PGV+R  +   +  A  R LQRC   +L+EP
Sbjct: 13  IEERGEQVLPTVRAVRVVAGAGRLIHEQVPGVARVRALAVHPRARSRGLQRCAALSLVEP 72

Query: 75  IPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVHRPVKRPSTLPWTLGR 129
           + ER+   +G     V ++ VH H+  RRH+RR LR V R V+RP  LP  L R
Sbjct: 73  VAERVGHRAGHHAGHVDHHPVHPHVAARRHKRRRLRPVRRLVERPRALPRALRR 126

[Close]

BLAST of CaUC11G205460 vs. ExPASy TrEMBL
Match: A0A371E4F5 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_60891 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 9.3e-15
Identity = 51/114 (44.74%), Postives = 66/114 (57.89%), Query Frame = 0


Query: 13  DRIKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALI 72
           DR+   R+Q      T  +V      +HQ +  V+R   F EYSGA R RLQR     L+
Sbjct: 34  DRVPHSRQQKPATAHTHCVVASPRRFIHQNVTRVTRICPFSEYSGARRHRLQRRHRRPLV 93

Query: 73  EPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVHRPVKRPSTLPWTL 127
            PIPER+R  SG+  RQ  Y++VH  + +RR+QRR LR VHR V+ P  LP TL
Sbjct: 94  VPIPERVRHRSGQHRRQSDYHSVHPDVAVRRNQRRSLRAVHRLVEWPRALPGTL 147

[Close]

BLAST of CaUC11G205460 vs. ExPASy TrEMBL
Match: A0A5A7RDX8 (50S ribosomal protein L16 OS=Striga asiatica OX=4170 GN=STAS_33208 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-13
Identity = 50/115 (43.48%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 14  RIKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIE 73
           R+  RR+QI PP+  VR+V  +   V Q +  VSR  + PE+  A R RLQR     L  
Sbjct: 17  RVPHRRQQILPPVHAVRVVAGAARLVRQHVTRVSRVCARPEHPRARRHRLQRRRRRPLEV 76

Query: 74  PIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVHRPVKRPSTLPWTLGR 129
           P  E +R   G+  RQV ++ VHS++  RRHQRR LR VHR V+RP      L R
Sbjct: 77  PAVEGVRHRPGQHCRQVDHHPVHSNVAARRHQRRRLRPVHRLVERPRAETRALAR 131

[Close]

BLAST of CaUC11G205460 vs. ExPASy TrEMBL
Match: A0A059BKL2 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F00363 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-12
Identity = 48/113 (42.48%), Postives = 65/113 (57.52%), Query Frame = 0


Query: 14  RIKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIE 73
           RI + R Q+  P+  VR+V R    +HQ++PGV+R        GA RRRLQR    AL+ 
Sbjct: 30  RIVESRDQVLSPVHAVRVVARPRRLIHQQVPGVARVRPVTVDPGARRRRLQRRPRLALVV 89

Query: 74  PIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVHRPVKRPSTLPWTL 127
           P+ ER+R   G++  QV ++ V   I + RHQRR LR V   V+RP  LP  L
Sbjct: 90  PVRERVRGGPGEEACQVDHHPVDGDIPVGRHQRRALRAVLGLVERPRALPRAL 142

The following BLAST results are available for this feature:

BLAST of CaUC11G205460 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB8101767.1	5.1e-15	41.23	hypothetical protein EE612_032745, partial [Oryza sativa]	[more]
BAS96821.1	5.1e-15	41.23	Os06g0220100, partial [Oryza sativa Japonica Group]	[more]
RDX60926.1	1.9e-14	44.74	hypothetical protein CR513_60891, partial [Mucuna pruriens]	[more]
GER55536.1	3.6e-13	43.48	50S ribosomal protein L16 [Striga asiatica]	[more]
KCW66564.1	3.1e-12	42.48	hypothetical protein EUGRSUZ_F00363 [Eucalyptus grandis]	[more]

BLAST of CaUC11G205460 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC11G205460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0P0WUF2	2.5e-15	41.23	Os06g0220100 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os06...	[more]
A0A0D9WNC7	4.2e-15	39.47	Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1	[more]
A0A371E4F5	9.3e-15	44.74	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_60891 P...	[more]
A0A5A7RDX8	1.8e-13	43.48	50S ribosomal protein L16 OS=Striga asiatica OX=4170 GN=STAS_33208 PE=4 SV=1	[more]
A0A059BKL2	1.5e-12	42.48	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F00363 PE=4 SV...	[more]

BLAST of CaUC11G205460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC11G205460.1	CaUC11G205460.1	mRNA