CaUC11G204920 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC11G204920
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionBEST Arabidopsis thaliana protein match is: NHL domain-containing protein .
LocationCiama_Chr11: 4487263 .. 4487592 (-)
RNA-Seq ExpressionCaUC11G204920
SyntenyCaUC11G204920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAAGCAGAGAAACAGAAAAGCCGGGAAGAAATAATGTCCTGTTGGGAGCGTTTGAAGATGAAGATTTTGTCAAAAAATGGAGAGGGCAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATCTTTGTATGGGAGAGAGAAGCAGATTGAATAATAATAATAGGAGTGGGGGATTATTCAGATACGATCCATTAAGCTACGCTCAGAATTTCGACGAGGGATTGGCTAATGCAGATGAAGAAGGACCCTATCGAAGTTTTTCTGCAAGATATGCTGTTCCTTCCAAACCGCCAGCAAAGAAGTTAGAATAG

mRNA sequence

ATGGAGAAAGCAGAGAAACAGAAAAGCCGGGAAGAAATAATGTCCTGTTGGGAGCGTTTGAAGATGAAGATTTTATACGATCCATTAAGCTACGCTCAGAATTTCGACGAGGGATTGGCTAATGCAGATGAAGAAGGACCCTATCGAAGTTTTTCTGCAAGATATGCTGTTCCTTCCAAACCGCCAGCAAAGAAGTTAGAATAG

Coding sequence (CDS)

ATGGAGAAAGCAGAGAAACAGAAAAGCCGGGAAGAAATAATGTCCTGTTGGGAGCGTTTGAAGATGAAGATTTTATACGATCCATTAAGCTACGCTCAGAATTTCGACGAGGGATTGGCTAATGCAGATGAAGAAGGACCCTATCGAAGTTTTTCTGCAAGATATGCTGTTCCTTCCAAACCGCCAGCAAAGAAGTTAGAATAG

Protein sequence

MEKAEKQKSREEIMSCWERLKMKILYDPLSYAQNFDEGLANADEEGPYRSFSARYAVPSKPPAKKLE
Homology
BLAST of CaUC11G204920 vs. NCBI nr
Match: KGN60281.1 (hypothetical protein Csa_002688 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 2.8e-17
Identity = 56/101 (55.45%), Postives = 62/101 (61.39%), Query Frame = 0

Query: 1   MEKAEKQKSREEIMSCWERLKMKIL----------------------------------- 60
           M+KAEKQK++EE MSCWERL+MKIL                                   
Sbjct: 1   MKKAEKQKNKEETMSCWERLRMKILSRKKEGNINNKNDTNITCMGGETSGLNNRSGGLFK 60

Query: 61  YDPLSYAQNFDEGLANADEEGPYRSFSARYAVPSKPPAKKL 67
           YD LSYA+NFDEGLANAD EG +RSFSARYAVPSKPPAKKL
Sbjct: 61  YDALSYAKNFDEGLANADGEGSFRSFSARYAVPSKPPAKKL 101

BLAST of CaUC11G204920 vs. NCBI nr
Match: KAG6591707.1 (hypothetical protein SDJN03_14053, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-09
Identity = 44/81 (54.32%), Postives = 51/81 (62.96%), Query Frame = 0

Query: 1  MEKAEKQKSREEIMSCWERLKMKI----------------LYDPLSYAQNFDEGLANADE 60
          +E  EK+KS+ E MS W+ LK KI                 YD +SYAQNFD+GL NAD+
Sbjct: 3  IEGPEKKKSK-ETMSIWKCLKSKISGKKEGTTSKNEHGKFSYDAVSYAQNFDDGLGNADD 62

Query: 61 EGPYRSFSARYAVPSKPPAKK 66
          EG  RSFSARYAV SKPP KK
Sbjct: 63 EGSSRSFSARYAVASKPPPKK 82

BLAST of CaUC11G204920 vs. NCBI nr
Match: KAG7024589.1 (hypothetical protein SDJN02_13407, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.6 bits (174), Expect = 2.8e-09
Identity = 44/82 (53.66%), Postives = 51/82 (62.20%), Query Frame = 0

Query: 1  MEKAEKQKSREEIMSCWERLKMKI-----------------LYDPLSYAQNFDEGLANAD 60
          +E  EK+KS+ E  S W+ LK KI                  YD +SYAQNFD+GLANAD
Sbjct: 3  IEGPEKKKSK-ETTSIWKCLKSKISSGKKEGTTSKNEHGKFSYDAVSYAQNFDDGLANAD 62

Query: 61 EEGPYRSFSARYAVPSKPPAKK 66
          +EG  RSFSARYAV SKPP KK
Sbjct: 63 DEGSSRSFSARYAVASKPPPKK 83

BLAST of CaUC11G204920 vs. NCBI nr
Match: KAG6608120.1 (hypothetical protein SDJN03_01462, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.2 bits (173), Expect = 3.7e-09
Identity = 43/86 (50.00%), Postives = 49/86 (56.98%), Query Frame = 0

Query: 1  MEKAEKQKSREEIMSCWERLKMKIL----------------------YDPLSYAQNFDEG 60
          MEK+E QKS EE++SCW RLK+K+L                      YD LSYAQNFDEG
Sbjct: 1  MEKSEGQKSSEELVSCWGRLKLKLLLMKREGNNPCIGDTKPLNGGFRYDALSYAQNFDEG 60

Query: 61 LANADEEGPYRSFSARYAVPSKPPAK 65
          L + DEE   R FSARY   SKP  K
Sbjct: 61 LDDEDEELRCRGFSARYVSASKPLPK 86

BLAST of CaUC11G204920 vs. NCBI nr
Match: KAG5034444.1 (hypothetical protein JHK87_009354 [Glycine soja])

HSP 1 Score: 61.6 bits (148), Expect = 2.9e-06
Identity = 32/61 (52.46%), Postives = 36/61 (59.02%), Query Frame = 0

Query: 14 MSCWERLKMKI---------------LYDPLSYAQNFDEGLANADEEGPYRSFSARYAVP 60
          +SCW RLK+K+                YDPLSYAQNFDEG    DEE  +R FSARYA P
Sbjct: 16 LSCWGRLKLKLPWAKRTSTYKPIGGFNYDPLSYAQNFDEGWVEDDEESLHRGFSARYAAP 75

BLAST of CaUC11G204920 vs. ExPASy TrEMBL
Match: A0A0A0LJR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893310 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.4e-17
Identity = 56/101 (55.45%), Postives = 62/101 (61.39%), Query Frame = 0

Query: 1   MEKAEKQKSREEIMSCWERLKMKIL----------------------------------- 60
           M+KAEKQK++EE MSCWERL+MKIL                                   
Sbjct: 1   MKKAEKQKNKEETMSCWERLRMKILSRKKEGNINNKNDTNITCMGGETSGLNNRSGGLFK 60

Query: 61  YDPLSYAQNFDEGLANADEEGPYRSFSARYAVPSKPPAKKL 67
           YD LSYA+NFDEGLANAD EG +RSFSARYAVPSKPPAKKL
Sbjct: 61  YDALSYAKNFDEGLANADGEGSFRSFSARYAVPSKPPAKKL 101

BLAST of CaUC11G204920 vs. ExPASy TrEMBL
Match: A0A0B2RTQ8 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_001296 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-06
Identity = 36/76 (47.37%), Postives = 43/76 (56.58%), Query Frame = 0

Query: 1  MEKAEKQKSREE--IMSCWERLKMKI---------------LYDPLSYAQNFDEGLANAD 60
          MEK+   +S+     +SCW RLK+K+                YDPLSYAQNFDEG    D
Sbjct: 1  MEKSSSLRSKTNGGRLSCWGRLKLKLPWAKRTSSYKPIGGFNYDPLSYAQNFDEGWVEDD 60

BLAST of CaUC11G204920 vs. ExPASy TrEMBL
Match: K7K3E9 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_01G122400 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-06
Identity = 36/76 (47.37%), Postives = 43/76 (56.58%), Query Frame = 0

Query: 1  MEKAEKQKSREE--IMSCWERLKMKI---------------LYDPLSYAQNFDEGLANAD 60
          MEK+   +S+     +SCW RLK+K+                YDPLSYAQNFDEG    D
Sbjct: 1  MEKSSSLRSKTNGGRLSCWGRLKLKLPWAKRTSSYKPIGGFNYDPLSYAQNFDEGWVEDD 60

BLAST of CaUC11G204920 vs. ExPASy TrEMBL
Match: K7KJ14 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_04G090800 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.2e-06
Identity = 36/76 (47.37%), Postives = 42/76 (55.26%), Query Frame = 0

Query: 1  MEKAEK--QKSREEIMSCWERLKMKI---------------LYDPLSYAQNFDEGLANAD 60
          MEK+     K+    +SCW RLK+K+                YDPLSYAQNFDEG    D
Sbjct: 1  MEKSSSPGSKTNGGWLSCWGRLKLKLPWAKRTSTYKSIGGFKYDPLSYAQNFDEGWVEDD 60

BLAST of CaUC11G204920 vs. ExPASy TrEMBL
Match: A0A445KYI8 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_009209 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.2e-06
Identity = 36/76 (47.37%), Postives = 42/76 (55.26%), Query Frame = 0

Query: 1  MEKAEK--QKSREEIMSCWERLKMKI---------------LYDPLSYAQNFDEGLANAD 60
          MEK+     K+    +SCW RLK+K+                YDPLSYAQNFDEG    D
Sbjct: 13 MEKSSSPGSKTNGGWLSCWGRLKLKLPWAKRTSTYKSIGGFKYDPLSYAQNFDEGWVEDD 72

BLAST of CaUC11G204920 vs. TAIR 10
Match: AT3G01430.1 (BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 3.5e-05
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 0

Query: 23  KILYDPLSYAQNFDEG--LANADEEGPYRSFSARYAVPSKPPAKK 66
           K  YD LSY+ NFD+G    + D+E PYR +S R+A PS P + K
Sbjct: 124 KFRYDQLSYSLNFDDGNQTGHFDDEFPYRDYSMRFAAPSLPVSTK 168

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN60281.12.8e-1755.45hypothetical protein Csa_002688 [Cucumis sativus][more]
KAG6591707.11.3e-0954.32hypothetical protein SDJN03_14053, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7024589.12.8e-0953.66hypothetical protein SDJN02_13407, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6608120.13.7e-0950.00hypothetical protein SDJN03_01462, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG5034444.12.9e-0652.46hypothetical protein JHK87_009354 [Glycine soja][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJR51.4e-1755.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893310 PE=4 SV=1[more]
A0A0B2RTQ81.9e-0647.37Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_001296 PE=4 SV=1[more]
K7K3E91.9e-0647.37Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_01G122400 PE=4 SV=1[more]
K7KJ143.2e-0647.37Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_04G090800 PE=4 SV=1[more]
A0A445KYI83.2e-0647.37Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_009209 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G01430.13.5e-0548.89BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC11G204920.1CaUC11G204920.1mRNA