CaUC11G203580 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC11G203580
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Copper amine oxidase family protein
Location	Ciama_Chr11: 3007849 .. 3008389 (+)
RNA-Seq Expression	CaUC11G203580
Synteny	CaUC11G203580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCATAGAAGCTTACATTTGAATAACTTGTTTTCCCTTATCACTCTCATTCTTCTTCTTCTTCTTCTTCACTCCCTCTCTCTAACATCATCAAGGCCATTGCATGACATTCATCCATTGGCCTCGGCCTCCGCCATTGCAGTCGTCGACCGTAATCGTCGTGCTATAACACCTCCTGCTCCAGTATCAGCGTTGTCGTTCTCGATAAACCGACATAAATATGTCGAAATGGACGCATTCCGACCGACCTCGCCCGGGCATAGCCCTGGGGTTGGCCACACGAATCCACCAGGTAGGTCGTAGCGGTCTCGCCGATGCTGCATCTGTTCGGCCGGAGTTTTTGGCAATGTGATTGTGTGTGTGTCTTTCTTCTGTTTGGACAATGATTTTGGGATTGTGTTTTGTAATGTACTTCCCTTTTTTGTGTGTGTTTTTTTCAGTGAAAGTTTACTGCATCATTTACTTTGTTTTGTTTTTTTGTTTTTTTGTTTTTTGCTCTTCCTCTTTCATATATATATTTTTCTTTTCCTCAAAATAA

mRNA sequence

ATGGCTCATAGAAGCTTACATTTGAATAACTTGTTTTCCCTTATCACTCTCATTCTTCTTCTTCTTCTTCTTCACTCCCTCTCTCTAACATCATCAAGGCCATTGCATGACATTCATCCATTGGCCTCGGCCTCCGCCATTGCAGTCGTCGACCGTAATCGTCGTGCTATAACACCTCCTGCTCCAGTATCAGCGTTGTCGTTCTCGATAAACCGACATAAATATGTCGAAATGGACGCATTCCGACCGACCTCGCCCGGGCATAGCCCTGGGGTTGGCCACACGAATCCACCAGTTTTCTTTTCCTCAAAATAA

Coding sequence (CDS)

ATGGCTCATAGAAGCTTACATTTGAATAACTTGTTTTCCCTTATCACTCTCATTCTTCTTCTTCTTCTTCTTCACTCCCTCTCTCTAACATCATCAAGGCCATTGCATGACATTCATCCATTGGCCTCGGCCTCCGCCATTGCAGTCGTCGACCGTAATCGTCGTGCTATAACACCTCCTGCTCCAGTATCAGCGTTGTCGTTCTCGATAAACCGACATAAATATGTCGAAATGGACGCATTCCGACCGACCTCGCCCGGGCATAGCCCTGGGGTTGGCCACACGAATCCACCAGTTTTCTTTTCCTCAAAATAA

Protein sequence

MAHRSLHLNNLFSLITLILLLLLLHSLSLTSSRPLHDIHPLASASAIAVVDRNRRAITPPAPVSALSFSINRHKYVEMDAFRPTSPGHSPGVGHTNPPVFFSSK

Homology

[Close]

BLAST of CaUC11G203580 vs. NCBI nr
Match: KAG6591857.1 (Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.3 bits (303), Expect = 4.9e-24
Identity = 68/97 (70.10%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 2  AHRSLHLNNLFSLITLILLLLLLHSLSLTSSRPLHDIHPLASASAIAVVDRNRRAITPPA 61
          A RSLH  NL  LIT     LLLHSLS+T SRPLH I PL SA+A+AVV  +  AI PPA
Sbjct: 3  ARRSLHFINLLPLIT-----LLLHSLSVT-SRPLHGIDPLPSAAAMAVVSAHCHAILPPA 62

Query: 62 PVSALSFSINRHKYVEMDAFRPTSPGHSPGVGHTNPP 99
          PVS L+FSINR+KYVE DAFRPT+PGHSPGVGHT+PP
Sbjct: 63 PVSTLAFSINRYKYVETDAFRPTTPGHSPGVGHTDPP 93

[Close]

BLAST of CaUC11G203580 vs. NCBI nr
Match: KAG6608019.1 (Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-14
Identity = 58/98 (59.18%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 1  MAHRSLHLNNLFSLITLILLLLLLHSLSLTSSRPLHDIHPLASASAIAVVDRNRRAITPP 60
          M  RS HL        L L++ LL+ LS+T SRP HDI+    + AI V   NR AITPP
Sbjct: 1  MPLRSFHL--------LALVVFLLYFLSVT-SRPRHDIY----SPAIVVGFGNRHAITPP 60

Query: 61 APVSALSFSINRHKYVEMDAFRPTSPGHSPGVGHTNPP 99
          A +S  +FSINR+KYVEMDAFRPTSPGHSPGVGH +PP
Sbjct: 61 ASMS--TFSINRYKYVEMDAFRPTSPGHSPGVGHKDPP 83

[Close]

BLAST of CaUC11G203580 vs. NCBI nr
Match: EXC31035.1 (hypothetical protein L484_021337 [Morus notabilis])

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-08
Identity = 44/88 (50.00%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 13 SLITLIL-LLLLLHSLSLT-SSRPLHDIHPLASASAIAVVDRNRRAITPPAPVSALSFSI 72
          SL++L + +LLLLHS+  T SSRPLH +HP  +      V       + P P S   FS+
Sbjct: 8  SLLSLYMAVLLLLHSIGFTSSSRPLHVVHPPVN------VLGGPPYKSKPRPPSTKWFSV 67

Query: 73 NRHKYVEMDAFRPTSPGHSPGVGHTNPP 99
          N +K  E DAFRPT+PGHSPGVGH +PP
Sbjct: 68 NHYKIAETDAFRPTAPGHSPGVGHGSPP 89

[Close]

BLAST of CaUC11G203580 vs. NCBI nr
Match: OAY24263.1 (hypothetical protein MANES_17G001300v8 [Manihot esculenta])

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-08
Identity = 45/89 (50.56%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 11 LFSLITLILLLLLLH-SLSLTSSRPLHDIHPLASASAIAVVDRNRRAITPPAPVSALSFS 70
          LFSL +L L+ L LH  L+  +SRPLH IHP     A         ++  P P  A  ++
Sbjct: 8  LFSLFSLFLVALHLHIDLAEAASRPLH-IHPPTIPKA---------SLRKPKPYFANLYA 67

Query: 71 INRHKYVEMDAFRPTSPGHSPGVGHTNPP 99
          INR K+ E +AFRPTSPGHSPGVGH NPP
Sbjct: 68 INRFKFTETEAFRPTSPGHSPGVGHENPP 86

[Close]

BLAST of CaUC11G203580 vs. NCBI nr
Match: TXG54609.1 (hypothetical protein EZV62_019865 [Acer yangbiense])

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 9  NNLFSLITLILLLLLLHSLSLTSSRPLHDIHPLASASAIAVVDRNRRAITPPAPVSALSF 68
          + +F+L  L++LLL  +   +++SRPL   HP A       + R+  ++  P P S   +
Sbjct: 3  DKIFTLSFLVVLLLQNNFELISASRPLGVFHPPA-------IPRSGLSMNKPKPPSIHYY 62

Query: 69 SINRHKYVEMDAFRPTSPGHSPGVGHTNPP 99
          +INR+K  E +AFRPTSPGHSPGVGH  PP
Sbjct: 63 TINRYKKTEAEAFRPTSPGHSPGVGHNEPP 85

[Close]

BLAST of CaUC11G203580 vs. ExPASy Swiss-Prot
Match: Q3EBM6 (Precursor of CEP4 OS=Arabidopsis thaliana OX=3702 GN=CEP4 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.8e-04
Identity = 21/40 (52.50%), Postives = 23/40 (57.50%), Query Frame = 0


Query: 59 PPAPVSALSFSINRHKYVEMDAFRPTSPGHSPGVGHTNPP 99
          PP         INR K +E DAFRPT  G S G+GH NPP
Sbjct: 44 PPKDDFVWYHKINRFKNIEQDAFRPTHQGPSQGIGHKNPP 83

[Close]

BLAST of CaUC11G203580 vs. ExPASy TrEMBL
Match: A0A0A0KWX0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G244900 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.1e-25
Identity = 69/99 (69.70%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 1  MAHRSLHLNNLFSLITLILLLLLLHSLSLTSSRPLHDIHPLASASAIAVVDRNRRAITPP 60
          MAHRSLHLN+ F L+ L+LLLLLLHSL +TSSRPLH IHP            N  AITPP
Sbjct: 1  MAHRSLHLNSFFPLVALLLLLLLLHSLFVTSSRPLHGIHP-----------HNPHAITPP 60

Query: 61 APVS-ALSFSINRHKYVEMDAFRPTSPGHSPGVGHTNPP 99
          APVS   SFSINR+KYVE DAFRPTSPGHSPGVGH  PP
Sbjct: 61 APVSLETSFSINRYKYVETDAFRPTSPGHSPGVGHNEPP 88

[Close]

BLAST of CaUC11G203580 vs. ExPASy TrEMBL
Match: A0A2C9U3U8 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G001300 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.1e-09
Identity = 45/89 (50.56%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 11 LFSLITLILLLLLLH-SLSLTSSRPLHDIHPLASASAIAVVDRNRRAITPPAPVSALSFS 70
          LFSL +L L+ L LH  L+  +SRPLH IHP     A         ++  P P  A  ++
Sbjct: 8  LFSLFSLFLVALHLHIDLAEAASRPLH-IHPPTIPKA---------SLRKPKPYFANLYA 67

Query: 71 INRHKYVEMDAFRPTSPGHSPGVGHTNPP 99
          INR K+ E +AFRPTSPGHSPGVGH NPP
Sbjct: 68 INRFKFTETEAFRPTSPGHSPGVGHENPP 86

[Close]

BLAST of CaUC11G203580 vs. ExPASy TrEMBL
Match: W9S854 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021337 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.1e-09
Identity = 44/88 (50.00%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 13 SLITLIL-LLLLLHSLSLT-SSRPLHDIHPLASASAIAVVDRNRRAITPPAPVSALSFSI 72
          SL++L + +LLLLHS+  T SSRPLH +HP  +      V       + P P S   FS+
Sbjct: 8  SLLSLYMAVLLLLHSIGFTSSSRPLHVVHPPVN------VLGGPPYKSKPRPPSTKWFSV 67

Query: 73 NRHKYVEMDAFRPTSPGHSPGVGHTNPP 99
          N +K  E DAFRPT+PGHSPGVGH +PP
Sbjct: 68 NHYKIAETDAFRPTAPGHSPGVGHGSPP 89

[Close]

BLAST of CaUC11G203580 vs. ExPASy TrEMBL
Match: B9S1S2 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0867620 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.3e-08
Identity = 46/98 (46.94%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 1  MAHRSLHLNNLFSLITLILLLLLLHSLSLTSSRPLHDIHPLASASAIAVVDRNRRAITPP 60
          MA+R+     L +L  +  LLL  H  S  +SRPLH +HP A  S  ++         P 
Sbjct: 1  MANRAF----LLTLFAISFLLLHQHLDSAVASRPLH-MHPPAIISQGSLK-------RPL 60

Query: 61 APVSALSFSINRHKYVEMDAFRPTSPGHSPGVGHTNPP 99
           P +AL +SINRHK+ E +AFRPT+PGHS GVGH NPP
Sbjct: 61 PPSTALLYSINRHKFTETEAFRPTAPGHSSGVGHGNPP 86

[Close]

BLAST of CaUC11G203580 vs. ExPASy TrEMBL
Match: A0A5C7HCP5 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_019865 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.3e-08
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 9  NNLFSLITLILLLLLLHSLSLTSSRPLHDIHPLASASAIAVVDRNRRAITPPAPVSALSF 68
          + +F+L  L++LLL  +   +++SRPL   HP A       + R+  ++  P P S   +
Sbjct: 3  DKIFTLSFLVVLLLQNNFELISASRPLGVFHPPA-------IPRSGLSMNKPKPPSIHYY 62

Query: 69 SINRHKYVEMDAFRPTSPGHSPGVGHTNPP 99
          +INR+K  E +AFRPTSPGHSPGVGH  PP
Sbjct: 63 TINRYKKTEAEAFRPTSPGHSPGVGHNEPP 85

[Close]

BLAST of CaUC11G203580 vs. TAIR 10
Match: AT2G35612.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G31670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 4.1e-05
Identity = 21/40 (52.50%), Postives = 23/40 (57.50%), Query Frame = 0


Query: 59 PPAPVSALSFSINRHKYVEMDAFRPTSPGHSPGVGHTNPP 99
          PP         INR K +E DAFRPT  G S G+GH NPP
Sbjct: 44 PPKDDFVWYHKINRFKNIEQDAFRPTHQGPSQGIGHKNPP 83

[Close]

BLAST of CaUC11G203580 vs. TAIR 10
Match: AT1G31670.1 (Copper amine oxidase family protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.7e-04
Identity = 33/96 (34.38%), Postives = 48/96 (50.00%), Query Frame = 0


Query: 9   NNLFSLITLILLLLLLHSLSLTSSRPLHDIHPLASASAIAVVDRNRRAITPPAPV--SAL 68
           N++ +L   +L LL+LH    T++     +      S+I          +PP+P      
Sbjct: 6   NSIVALSFFMLFLLVLHLHFETTTAARKPVRVFGPPSSI--------EWSPPSPPKDDFE 65

Query: 69  SFSINRHKYVEMDAFRPTSPGHSPGVGHTNPPVFFS 103
            F IN +K +E  AFRPT  G S G+GH +PPVF S
Sbjct: 66  WFEINIYKNIEQTAFRPTGQGPSQGIGHKDPPVFSS 93

The following BLAST results are available for this feature:

BLAST of CaUC11G203580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591857.1	4.9e-24	70.10	Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6608019.1	2.0e-14	59.18	Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
EXC31035.1	1.7e-08	50.00	hypothetical protein L484_021337 [Morus notabilis]	[more]
OAY24263.1	1.7e-08	50.56	hypothetical protein MANES_17G001300v8 [Manihot esculenta]	[more]
TXG54609.1	1.1e-07	43.33	hypothetical protein EZV62_019865 [Acer yangbiense]	[more]

BLAST of CaUC11G203580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3EBM6	5.8e-04	52.50	Precursor of CEP4 OS=Arabidopsis thaliana OX=3702 GN=CEP4 PE=2 SV=1	[more]

BLAST of CaUC11G203580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWX0	2.1e-25	69.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G244900 PE=3 SV=1	[more]
A0A2C9U3U8	8.1e-09	50.56	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G001300 PE=3 SV=...	[more]
W9S854	8.1e-09	50.00	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021337 PE=3 SV=1	[more]
B9S1S2	5.3e-08	46.94	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0867620 PE=3 SV=1	[more]
A0A5C7HCP5	5.3e-08	43.33	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_019865 PE=3 SV=1	[more]

BLAST of CaUC11G203580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35612.1	4.1e-05	52.50	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G31670.1	2.7e-04	34.38	Copper amine oxidase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..104
None	No IPR available	PANTHER	PTHR33348:SF20	PRECURSOR OF CEP4	coord: 11..101
IPR033250	C-terminally encoded peptide	PANTHER	PTHR33348	PRECURSOR OF CEP5	coord: 11..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC11G203580.1	CaUC11G203580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050793	regulation of developmental process
biological_process	GO:0048364	root development