CaUC11G202240 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC11G202240
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr11: 1805259 .. 1805531 (-)
RNA-Seq ExpressionCaUC11G202240
SyntenyCaUC11G202240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGGCAGCAAAAAGTTCATAATGGTGGCATTGTTGGTGGTGGCCTTGGTGCTGTGCCAAGCACACATGAGCTTGGGAATAAGGAAGTTATCCAAGAAGGAGATGAAGATGGCTTCAATGGGGGCCATCGATGTCGACATGCTTCTCGGCGCTCTTCCGAGAGGCCCGACGCCCCCTTCTGCCCCTAGCGAGCGAGGCAATCCTGCTCCTTTTGGTGATGGCAATCGTATCTTGGTATCTGCCCCAAGCCCTATAACAGGTCGTCATTAA

mRNA sequence

ATGATGGGCAGCAAAAAGTTCATAATGGTGGCATTGTTGGTGGTGGCCTTGGTGCTGTGCCAAGCACACATGAGCTTGGGAATAAGGAAGTTATCCAAGAAGGAGATGAAGATGGCTTCAATGGGGGCCATCGATGTCGACATGCTTCTCGGCGCTCTTCCGAGAGGCCCGACGCCCCCTTCTGCCCCTAGCGAGCGAGGCAATCCTGCTCCTTTTGGTGATGGCAATCGTATCTTGGTATCTGCCCCAAGCCCTATAACAGGTCGTCATTAA

Coding sequence (CDS)

ATGATGGGCAGCAAAAAGTTCATAATGGTGGCATTGTTGGTGGTGGCCTTGGTGCTGTGCCAAGCACACATGAGCTTGGGAATAAGGAAGTTATCCAAGAAGGAGATGAAGATGGCTTCAATGGGGGCCATCGATGTCGACATGCTTCTCGGCGCTCTTCCGAGAGGCCCGACGCCCCCTTCTGCCCCTAGCGAGCGAGGCAATCCTGCTCCTTTTGGTGATGGCAATCGTATCTTGGTATCTGCCCCAAGCCCTATAACAGGTCGTCATTAA

Protein sequence

MMGSKKFIMVALLVVALVLCQAHMSLGIRKLSKKEMKMASMGAIDVDMLLGALPRGPTPPSAPSERGNPAPFGDGNRILVSAPSPITGRH
Homology
BLAST of CaUC11G202240 vs. NCBI nr
Match: KAA0066754.1 (hypothetical protein E6C27_scaffold271G00930 [Cucumis melo var. makuwa] >TYK27901.1 hypothetical protein E5676_scaffold384G00860 [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 2.2e-28
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = 0

Query: 1  MMGSKKFIMVALLVVALVLCQAHMSLGIRKLSKKEMKMASMGAIDVD-MLLGALPRGPTP 60
          MMGS+KFIMVALLVVA VLCQAHMSLGIRKLS KEMKM  MG +DV+ MLLGALP+GPTP
Sbjct: 1  MMGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMG-VDVNYMLLGALPKGPTP 60

Query: 61 PSAPSERGNPAPFGDGNRILVSAPSPITG 89
          PSAPSERGNPAPF DG+R+LVSAPSP  G
Sbjct: 61 PSAPSERGNPAPFSDGDRVLVSAPSPGIG 88

BLAST of CaUC11G202240 vs. NCBI nr
Match: KGN55050.1 (hypothetical protein Csa_012928 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 4.1e-27
Identity = 73/89 (82.02%), Postives = 79/89 (88.76%), Query Frame = 0

Query: 1  MMGSKKFIMVALLVVALVLCQAHMSLGIRKLSKKEMKMASMGAIDVD-MLLGALPRGPTP 60
          MMGSKK IMVALLVVALVL QAHMSLGIRKLS KEMKM  +G +DV+ MLLGALP+GPTP
Sbjct: 1  MMGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIG-VDVNYMLLGALPKGPTP 60

Query: 61 PSAPSERGNPAPFGDGNRILVSAPSPITG 89
          PSAPSERGNPAPF DG+R+LVSAPSP  G
Sbjct: 61 PSAPSERGNPAPFSDGDRVLVSAPSPGIG 88

BLAST of CaUC11G202240 vs. NCBI nr
Match: KAG6607932.1 (hypothetical protein SDJN03_01274, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-13
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 0

Query: 2  MGSKKFIMVALLVVALVLCQAHMSLGIRKLSKKEMKMASMGAIDVDMLLGALPRGPTPPS 61
          M +KKF M A L +A +LCQ H +L IR    K+ K+ SMG +D DMLLG+LPRGP PPS
Sbjct: 1  MCTKKFTMAACLFLAFLLCQPHTTLAIRSFYHKDTKLPSMGVVDFDMLLGSLPRGPIPPS 60

Query: 62 APSERGNPAPFGDG 76
          APS R NPAPF  G
Sbjct: 61 APSNRENPAPFSGG 74

BLAST of CaUC11G202240 vs. ExPASy TrEMBL
Match: A0A5A7VHE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00860 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.0e-28
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = 0

Query: 1  MMGSKKFIMVALLVVALVLCQAHMSLGIRKLSKKEMKMASMGAIDVD-MLLGALPRGPTP 60
          MMGS+KFIMVALLVVA VLCQAHMSLGIRKLS KEMKM  MG +DV+ MLLGALP+GPTP
Sbjct: 1  MMGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMG-VDVNYMLLGALPKGPTP 60

Query: 61 PSAPSERGNPAPFGDGNRILVSAPSPITG 89
          PSAPSERGNPAPF DG+R+LVSAPSP  G
Sbjct: 61 PSAPSERGNPAPFSDGDRVLVSAPSPGIG 88

BLAST of CaUC11G202240 vs. ExPASy TrEMBL
Match: A0A0A0KZH3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625050 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.0e-27
Identity = 73/89 (82.02%), Postives = 79/89 (88.76%), Query Frame = 0

Query: 1  MMGSKKFIMVALLVVALVLCQAHMSLGIRKLSKKEMKMASMGAIDVD-MLLGALPRGPTP 60
          MMGSKK IMVALLVVALVL QAHMSLGIRKLS KEMKM  +G +DV+ MLLGALP+GPTP
Sbjct: 1  MMGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIG-VDVNYMLLGALPKGPTP 60

Query: 61 PSAPSERGNPAPFGDGNRILVSAPSPITG 89
          PSAPSERGNPAPF DG+R+LVSAPSP  G
Sbjct: 61 PSAPSERGNPAPFSDGDRVLVSAPSPGIG 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0066754.12.2e-2883.15hypothetical protein E6C27_scaffold271G00930 [Cucumis melo var. makuwa] >TYK2790... [more]
KGN55050.14.1e-2782.02hypothetical protein Csa_012928 [Cucumis sativus][more]
KAG6607932.11.1e-1359.46hypothetical protein SDJN03_01274, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VHE01.0e-2883.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KZH32.0e-2782.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625050 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC11G202240.1CaUC11G202240.1mRNA