CaUC11G201930 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC11G201930
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionGlutamate receptor
LocationCiama_Chr11: 1498826 .. 1499789 (-)
RNA-Seq ExpressionCaUC11G201930
SyntenyCaUC11G201930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGGGGTTTCTTATTACACTCTATATATTGGGAGGGAGAGAGCAAAGCCTTTGGCTTTTGACTATCATTTCTCATAAGAAATGGGAAAGTTTCCCTTTCTGTTTCCTTTCTTGTTGTTTGCTCTGATAGTTTCTGGAAAGCATGAAACCGAAAGAAATGTGAGTGCAACAATGGTTGATGATGGAAAGGGCAGAATAGGGGCCATTGTAGATCTGAGTTCCAGGATTGGTAAGGAAGAGATTTTAGCTATGCACATGGCTATAGAGGATTTTAACTCCTTGAACAATCAAAATTTCAGTCTTATCATTAAAGATTCCAGAAGTGATCCCAATCTTGCAGGTGAGCCTTCTCATTTCGTTTTAATTTCATTGAATGCACTTCTGTTCATATCAATTGAACTGTCTTGAAGTAGAAAGCAGTCCTGGTTTTTTCGTTACCTCCTACTATCTATCATTAAACAGAATTTATCACCTAAACACAATCTAAATGAACTATTGAATTTGCAGCTAAAGAGCTCATCAGTGTACAACAAGTTCATGCTTTAATAGGGCCACAAACTTGGGAAATGGCATCCGTAGTTGCTGAGGTTGGAAATGAGAATCAGATTCCTGTACTAGCATTAGCTAATGAAATACCAAAGTGGGCAACTGAGAGGTTCAAATTTTTGGTTCAGGCTTCTCCTTCCCAGTTAAATCAAATGAAGACTATAGCTGGTATTATCAGTTCATGGGATTGGCATCTAGTCAATGTTATATATGAAGATAGAGATTTCTCAACCACAGGAATATTTCCTGATCTTGTACATGCCCTCAAAGATGTAGGAGCTGAAGTAAGTGAATTTGTTGGTCTCTCACAGTTTGATTCTGATTTATTTTCTAAAGAACTGGAAAAGCTAAGAAGAGGGTCATGCAGAATTTTTGTAGTGCATATGTCTTTCAAGTTGGCACTGCATCTATTTGA

mRNA sequence

ATGTTTCTGGAAAGCATGAAACCGAAAGAAATGATTGGTAAGGAAGAGATTTTAGCTATGCACATGGCTATAGAGGATTTTAACTCCTTGAACAATCAAAATTTCAGTCTTATCATTAAAGATTCCAGAAGTGATCCCAATCTTGCAGCTAAAGAGCTCATCAGTGTACAACAAGTTCATGCTTTAATAGGGCCACAAACTTGGGAAATGGCATCCGTAGTTGCTGAGGCTTCTCCTTCCCAGTTAAATCAAATGAAGACTATAGCTGGTATTATCAGTTCATGGGATTGGCATCTAGTCAATGTTATATATGAAGATAGAGATTTCTCAACCACAGGAATATTTCCTGATCTTGTACATGCCCTCAAAGATGTAGGAGCTGAAAATTTTTGTAGTGCATATGTCTTTCAAGTTGGCACTGCATCTATTTGA

Coding sequence (CDS)

ATGTTTCTGGAAAGCATGAAACCGAAAGAAATGATTGGTAAGGAAGAGATTTTAGCTATGCACATGGCTATAGAGGATTTTAACTCCTTGAACAATCAAAATTTCAGTCTTATCATTAAAGATTCCAGAAGTGATCCCAATCTTGCAGCTAAAGAGCTCATCAGTGTACAACAAGTTCATGCTTTAATAGGGCCACAAACTTGGGAAATGGCATCCGTAGTTGCTGAGGCTTCTCCTTCCCAGTTAAATCAAATGAAGACTATAGCTGGTATTATCAGTTCATGGGATTGGCATCTAGTCAATGTTATATATGAAGATAGAGATTTCTCAACCACAGGAATATTTCCTGATCTTGTACATGCCCTCAAAGATGTAGGAGCTGAAAATTTTTGTAGTGCATATGTCTTTCAAGTTGGCACTGCATCTATTTGA

Protein sequence

MFLESMKPKEMIGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPNLAAKELISVQQVHALIGPQTWEMASVVAEASPSQLNQMKTIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAENFCSAYVFQVGTASI
Homology
[Close]
BLAST of CaUC11G201930 vs. NCBI nr
Match: XP_038898557.1 (glutamate receptor 2.8-like [Benincasa hispida])

HSP 1 Score: 195.7 bits (496), Expect = 2.8e-46
Identity = 107/149 (71.81%), Postives = 113/149 (75.84%), Query Frame = 0 

Query: 12  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTW 71
           IGKEEILAMHMAIE+FNSL+NQNFSLII+DSRSDPN   LAAK+LISVQQVHALIG QTW
Sbjct: 49  IGKEEILAMHMAIEEFNSLSNQNFSLIIRDSRSDPNLAALAAKDLISVQQVHALIGRQTW 108

Query: 72  EMASVVAE-----------------------------ASPSQLNQMKTIAGIISSWDWHL 129
           EMASVVAE                             ASPSQLNQM+ I GIISSWDWHL
Sbjct: 109 EMASVVAEVGNENQIPVLALANEIPKWATEKFKFLVQASPSQLNQMRAIVGIISSWDWHL 168

[Close]
BLAST of CaUC11G201930 vs. NCBI nr
Match: XP_022976413.1 (glutamate receptor 2.8-like [Cucurbita maxima])

HSP 1 Score: 183.7 bits (465), Expect = 1.1e-42
Identity = 100/149 (67.11%), Postives = 110/149 (73.83%), Query Frame = 0 

Query: 12  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTW 71
           IGKEEILAM MAIEDFNSL+N+NFSL+I+DSRSDPN   LAAK+LIS+Q+V  LIGPQTW
Sbjct: 49  IGKEEILAMQMAIEDFNSLSNRNFSLVIRDSRSDPNLAALAAKDLISMQRVQVLIGPQTW 108

Query: 72  EMASVVAE-----------------------------ASPSQLNQMKTIAGIISSWDWHL 129
           E+ASVV+E                             ASPSQLNQM+ IAGII SWDWHL
Sbjct: 109 EVASVVSEVGNEEKIPVLALANEIPKWANERFKFLVQASPSQLNQMRAIAGIIGSWDWHL 168

[Close]
BLAST of CaUC11G201930 vs. NCBI nr
Match: ADN33805.1 (glutamate-gated kainate-type ion channel receptor subunit glur5 [Cucumis melo subsp. melo] >KAA0066786.1 glutamate-gated kainate-type ion channel receptor subunit glur5 [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-42
Identity = 101/149 (67.79%), Postives = 111/149 (74.50%), Query Frame = 0 

Query: 12  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTW 71
           IGKEEILAMHMAIEDFNSL+NQNFSL+I+D+R+DPN   LAAK+LISVQ+V ALIGPQTW
Sbjct: 34  IGKEEILAMHMAIEDFNSLSNQNFSLVIRDTRNDPNLAALAAKDLISVQRVQALIGPQTW 93

Query: 72  EMASVVAE-----------------------------ASPSQLNQMKTIAGIISSWDWHL 129
           EMASVVAE                             ASPSQLNQM+ IAGI+SS DWHL
Sbjct: 94  EMASVVAEVGSENQIPVLALANEIPKWATDRSKFLVQASPSQLNQMRAIAGIVSSGDWHL 153

[Close]
BLAST of CaUC11G201930 vs. NCBI nr
Match: XP_008463716.1 (PREDICTED: glutamate receptor 2.8-like isoform X2 [Cucumis melo])

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-42
Identity = 101/149 (67.79%), Postives = 111/149 (74.50%), Query Frame = 0 

Query: 12  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTW 71
           IGKEEILAMHMAIEDFNSL+NQNFSL+I+D+R+DPN   LAAK+LISVQ+V ALIGPQTW
Sbjct: 49  IGKEEILAMHMAIEDFNSLSNQNFSLVIRDTRNDPNLAALAAKDLISVQRVQALIGPQTW 108

Query: 72  EMASVVAE-----------------------------ASPSQLNQMKTIAGIISSWDWHL 129
           EMASVVAE                             ASPSQLNQM+ IAGI+SS DWHL
Sbjct: 109 EMASVVAEVGSENQIPVLALANEIPKWATDRSKFLVQASPSQLNQMRAIAGIVSSGDWHL 168

[Close]
BLAST of CaUC11G201930 vs. NCBI nr
Match: TYK27933.1 (glutamate receptor 2.8-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-42
Identity = 101/149 (67.79%), Postives = 111/149 (74.50%), Query Frame = 0 

Query: 12  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTW 71
           IGKEEILAMHMAIEDFNSL+NQNFSL+I+D+R+DPN   LAAK+LISVQ+V ALIGPQTW
Sbjct: 34  IGKEEILAMHMAIEDFNSLSNQNFSLVIRDTRNDPNLAALAAKDLISVQRVQALIGPQTW 93

Query: 72  EMASVVAE-----------------------------ASPSQLNQMKTIAGIISSWDWHL 129
           EMASVVAE                             ASPSQLNQM+ IAGI+SS DWHL
Sbjct: 94  EMASVVAEVGSENQIPVLALANEIPKWATDRSKFLVQASPSQLNQMRAIAGIVSSGDWHL 153

[Close]
BLAST of CaUC11G201930 vs. ExPASy TrEMBL
Match: A0A6J1IM27 (Glutamate receptor OS=Cucurbita maxima OX=3661 GN=LOC111476827 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 5.3e-43
Identity = 100/149 (67.11%), Postives = 110/149 (73.83%), Query Frame = 0 

Query: 12  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTW 71
           IGKEEILAM MAIEDFNSL+N+NFSL+I+DSRSDPN   LAAK+LIS+Q+V  LIGPQTW
Sbjct: 49  IGKEEILAMQMAIEDFNSLSNRNFSLVIRDSRSDPNLAALAAKDLISMQRVQVLIGPQTW 108

Query: 72  EMASVVAE-----------------------------ASPSQLNQMKTIAGIISSWDWHL 129
           E+ASVV+E                             ASPSQLNQM+ IAGII SWDWHL
Sbjct: 109 EVASVVSEVGNEEKIPVLALANEIPKWANERFKFLVQASPSQLNQMRAIAGIIGSWDWHL 168

[Close]
BLAST of CaUC11G201930 vs. ExPASy TrEMBL
Match: A0A5A7VK72 (Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G001280 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 6.9e-43
Identity = 101/149 (67.79%), Postives = 111/149 (74.50%), Query Frame = 0 

Query: 12  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTW 71
           IGKEEILAMHMAIEDFNSL+NQNFSL+I+D+R+DPN   LAAK+LISVQ+V ALIGPQTW
Sbjct: 34  IGKEEILAMHMAIEDFNSLSNQNFSLVIRDTRNDPNLAALAAKDLISVQRVQALIGPQTW 93

Query: 72  EMASVVAE-----------------------------ASPSQLNQMKTIAGIISSWDWHL 129
           EMASVVAE                             ASPSQLNQM+ IAGI+SS DWHL
Sbjct: 94  EMASVVAEVGSENQIPVLALANEIPKWATDRSKFLVQASPSQLNQMRAIAGIVSSGDWHL 153

[Close]
BLAST of CaUC11G201930 vs. ExPASy TrEMBL
Match: A0A5D3DW80 (Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001210 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 6.9e-43
Identity = 101/149 (67.79%), Postives = 111/149 (74.50%), Query Frame = 0 

Query: 12  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTW 71
           IGKEEILAMHMAIEDFNSL+NQNFSL+I+D+R+DPN   LAAK+LISVQ+V ALIGPQTW
Sbjct: 34  IGKEEILAMHMAIEDFNSLSNQNFSLVIRDTRNDPNLAALAAKDLISVQRVQALIGPQTW 93

Query: 72  EMASVVAE-----------------------------ASPSQLNQMKTIAGIISSWDWHL 129
           EMASVVAE                             ASPSQLNQM+ IAGI+SS DWHL
Sbjct: 94  EMASVVAEVGSENQIPVLALANEIPKWATDRSKFLVQASPSQLNQMRAIAGIVSSGDWHL 153

[Close]
BLAST of CaUC11G201930 vs. ExPASy TrEMBL
Match: E5GBG3 (Glutamate receptor OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 6.9e-43
Identity = 101/149 (67.79%), Postives = 111/149 (74.50%), Query Frame = 0 

Query: 12  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTW 71
           IGKEEILAMHMAIEDFNSL+NQNFSL+I+D+R+DPN   LAAK+LISVQ+V ALIGPQTW
Sbjct: 34  IGKEEILAMHMAIEDFNSLSNQNFSLVIRDTRNDPNLAALAAKDLISVQRVQALIGPQTW 93

Query: 72  EMASVVAE-----------------------------ASPSQLNQMKTIAGIISSWDWHL 129
           EMASVVAE                             ASPSQLNQM+ IAGI+SS DWHL
Sbjct: 94  EMASVVAEVGSENQIPVLALANEIPKWATDRSKFLVQASPSQLNQMRAIAGIVSSGDWHL 153

[Close]
BLAST of CaUC11G201930 vs. ExPASy TrEMBL
Match: A0A1S3CLG9 (Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103501797 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 6.9e-43
Identity = 101/149 (67.79%), Postives = 111/149 (74.50%), Query Frame = 0 

Query: 12  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTW 71
           IGKEEILAMHMAIEDFNSL+NQNFSL+I+D+R+DPN   LAAK+LISVQ+V ALIGPQTW
Sbjct: 49  IGKEEILAMHMAIEDFNSLSNQNFSLVIRDTRNDPNLAALAAKDLISVQRVQALIGPQTW 108

Query: 72  EMASVVAE-----------------------------ASPSQLNQMKTIAGIISSWDWHL 129
           EMASVVAE                             ASPSQLNQM+ IAGI+SS DWHL
Sbjct: 109 EMASVVAEVGSENQIPVLALANEIPKWATDRSKFLVQASPSQLNQMRAIAGIVSSGDWHL 168

The following BLAST results are available for this feature:
BLAST of CaUC11G201930 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038898557.12.8e-4671.81glutamate receptor 2.8-like [Benincasa hispida][more]
XP_022976413.11.1e-4267.11glutamate receptor 2.8-like [Cucurbita maxima][more]
ADN33805.11.4e-4267.79glutamate-gated kainate-type ion channel receptor subunit glur5 [Cucumis melo su... [more]
XP_008463716.11.4e-4267.79PREDICTED: glutamate receptor 2.8-like isoform X2 [Cucumis melo][more]
TYK27933.11.4e-4267.79glutamate receptor 2.8-like isoform X2 [Cucumis melo var. makuwa][more]
BLAST of CaUC11G201930 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC11G201930 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IM275.3e-4367.11Glutamate receptor OS=Cucurbita maxima OX=3661 GN=LOC111476827 PE=3 SV=1[more]
A0A5A7VK726.9e-4367.79Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G0... [more]
A0A5D3DW806.9e-4367.79Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G0... [more]
E5GBG36.9e-4367.79Glutamate receptor OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1[more]
A0A1S3CLG96.9e-4367.79Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103501797 PE=3 SV=1[more]
BLAST of CaUC11G201930 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.2300coord: 5..83
e-value: 5.0E-8
score: 34.8
NoneNo IPR availableGENE3D3.40.50.2300coord: 84..141
e-value: 5.6E-5
score: 25.0
NoneNo IPR availablePANTHERPTHR18966IONOTROPIC GLUTAMATE RECEPTORcoord: 76..128
coord: 11..77
NoneNo IPR availablePANTHERPTHR18966:SF463GLUTAMATE RECEPTORcoord: 76..128
coord: 11..77
IPR028082Periplasmic binding protein-like ISUPERFAMILY53822Periplasmic binding protein-like Icoord: 8..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC11G201930.1CaUC11G201930.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0005886 plasma membrane
molecular_function GO:0015276 ligand-gated ion channel activity
molecular_function GO:0038023 signaling receptor activity