CaUC11G201480 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC11G201480
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr11: 1043510 .. 1044067 (-)
RNA-Seq ExpressionCaUC11G201480
SyntenyCaUC11G201480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTTACAAAAATTAGTTTTCTGGTTGGTCTCTTGGCATTTCTCTGCTTAAGCCTCGGCTCTGCCCATCGAGTTCTCAAGAACAACCATTCTGAAAACCAATTAATAAGTGACAGTGTGTCTTCTGGACAAGATAATCACCTACAAAATTCCAGCCATGCTGAGTTGAAAAGTATACCAAAAGGCAACATACCAAAATTCAGTTCTGTTGGTCCAACAAATGGTGATTGTTGCAACTATGGCAACATCTGTGGAGGATATTCATGTTGTGGTGGAAGCTCTGGTTGCCCGTCATGCTACACTTGTTCGCCATGTCAATGGCAGGAATGCCAGGGATGCCAGGGATGTCAAGAGTGTCAGGAGTGTCAAGGATGCCAGAGTTGTGGCTGTCAAGTCCGCATGAACAACTCTAAGGTCAAACAGGAATCTATTCAAGCAAGTGAACCTGAACCGCCTATTGTTACAATTGTTCCACCAGTCCAGCCAGCAGATCATAACATAAAATCTAGTGGGGAAGCAAATCAGGACATGAAATCCAATGGCGGTCTGGTTTAG

mRNA sequence

ATGGCTGTTACAAAAATTAGTTTTCTGGTTGGTCTCTTGGCATTTCTCTGCTTAAGCCTCGGCTCTGCCCATCGAGTTCTCAAGAACAACCATTCTGAAAACCAATTAATAAGTGACAGTGTGTCTTCTGGACAAGATAATCACCTACAAAATTCCAGCCATGCTGAGTTGAAAAGTATACCAAAAGGCAACATACCAAAATTCAGTTCTGTTGGTCCAACAAATGGTGATTGTTGCAACTATGGCAACATCTGTGGAGGATATTCATGTTGTGGTGGAAGCTCTGGTTGCCCGTCATGCTACACTTGTTCGCCATGTCAATGGCAGGAATGCCAGGGATGCCAGGGATGTCAAGAGTGTCAGGAGTGTCAAGGATGCCAGAGTTGTGGCTGTCAAGTCCGCATGAACAACTCTAAGGTCAAACAGGAATCTATTCAAGCAAGTGAACCTGAACCGCCTATTGTTACAATTGTTCCACCAGTCCAGCCAGCAGATCATAACATAAAATCTAGTGGGGAAGCAAATCAGGACATGAAATCCAATGGCGGTCTGGTTTAG

Coding sequence (CDS)

ATGGCTGTTACAAAAATTAGTTTTCTGGTTGGTCTCTTGGCATTTCTCTGCTTAAGCCTCGGCTCTGCCCATCGAGTTCTCAAGAACAACCATTCTGAAAACCAATTAATAAGTGACAGTGTGTCTTCTGGACAAGATAATCACCTACAAAATTCCAGCCATGCTGAGTTGAAAAGTATACCAAAAGGCAACATACCAAAATTCAGTTCTGTTGGTCCAACAAATGGTGATTGTTGCAACTATGGCAACATCTGTGGAGGATATTCATGTTGTGGTGGAAGCTCTGGTTGCCCGTCATGCTACACTTGTTCGCCATGTCAATGGCAGGAATGCCAGGGATGCCAGGGATGTCAAGAGTGTCAGGAGTGTCAAGGATGCCAGAGTTGTGGCTGTCAAGTCCGCATGAACAACTCTAAGGTCAAACAGGAATCTATTCAAGCAAGTGAACCTGAACCGCCTATTGTTACAATTGTTCCACCAGTCCAGCCAGCAGATCATAACATAAAATCTAGTGGGGAAGCAAATCAGGACATGAAATCCAATGGCGGTCTGGTTTAG

Protein sequence

MAVTKISFLVGLLAFLCLSLGSAHRVLKNNHSENQLISDSVSSGQDNHLQNSSHAELKSIPKGNIPKFSSVGPTNGDCCNYGNICGGYSCCGGSSGCPSCYTCSPCQWQECQGCQGCQECQECQGCQSCGCQVRMNNSKVKQESIQASEPEPPIVTIVPPVQPADHNIKSSGEANQDMKSNGGLV
Homology
BLAST of CaUC11G201480 vs. NCBI nr
Match: KGN55137.1 (hypothetical protein Csa_012773 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 8.6e-56
Identity = 127/215 (59.07%), Postives = 149/215 (69.30%), Query Frame = 0

Query: 1   MAVTKISFLVGLLAFLCLSLGSAHRVLKNNHSENQLISDSVSSGQDNHLQNSSHAELKSI 60
           MAVT+ S LVGLLAFLCLSLGSA+R+LKNN +ENQLI D V SG++NH QNS+H ELKSI
Sbjct: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSI 60

Query: 61  PKGNIPKFSSVGPTNGDCCNYGNIC------------------------GGYSCC----- 120
           P  ++ K SS+ P NGDCC+YG  C                        GG S C     
Sbjct: 61  PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGCSGCSGGGGGGCSGCSGGGG 120

Query: 121 -GGSSGCPSCYTCSPCQWQECQGCQGCQECQECQGCQSCGCQVRMNNSKVKQESIQASEP 180
            GGSS C SC TCS CQW   QGC GCQECQ CQGCQSCGCQ  M++SKV+Q+S+Q  EP
Sbjct: 121 GGGSSSCQSCNTCSSCQW---QGCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEP 180

Query: 181 EPPIVTIVPPVQPADHNIKSSGEANQDMKSNGGLV 186
             P+VTIVPP +P D++IKSSG +NQD+KSNGGLV
Sbjct: 181 -APVVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 211

BLAST of CaUC11G201480 vs. NCBI nr
Match: XP_023535133.1 (mesenchyme-specific cell surface glycoprotein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 185.7 bits (470), Expect = 3.7e-43
Identity = 125/225 (55.56%), Postives = 145/225 (64.44%), Query Frame = 0

Query: 1   MAVTKISFLVGLLAFLCLSLGSAHRVLKNNHSENQLISDSVSSGQDNHLQNSSHAELKSI 60
           MAVTK SFLVGLLAFLCLSL SA+RVLKNN +E +L+S++VSS QDN LQ+ ++AELKSI
Sbjct: 1   MAVTKSSFLVGLLAFLCLSLSSANRVLKNNDAEKELLSNNVSSEQDNQLQDFNNAELKSI 60

Query: 61  PKGNIPKFSSVGPTNGDC---C------------NYGNICG----GYSCCGGSSGCPSCY 120
           P+GN+PK SSVG   GDC   C            NYG+  G     Y   GGSSGC  CY
Sbjct: 61  PEGNVPKLSSVGSGYGDCGGNCGSSGGGGYTYPPNYGSGGGSSPPNYGSGGGSSGCQPCY 120

Query: 121 TCSPCQWQEC---QGCQGCQ-ECQECQ-GCQSC-----GCQV----------RMNNSKVK 180
           T SPC WQ C   QGCQGCQ  CQ CQ GCQ C     GCQ            +N+SK++
Sbjct: 121 TYSPCPWQGCPGFQGCQGCQGGCQGCQGGCQGCQGGCQGCQAPHPPCTFEVGTVNDSKIQ 180

Query: 181 QESI-QASEPEPPIVTIVPPVQPADHNIKSSGEANQDMKSNGGLV 186
            ESI    EPEPP++       P +H+IKSSG ANQDMKSNGGLV
Sbjct: 181 DESIPMGEEPEPPVL-------PENHHIKSSGGANQDMKSNGGLV 218

BLAST of CaUC11G201480 vs. NCBI nr
Match: KAG6591970.1 (hypothetical protein SDJN03_14316, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184.5 bits (467), Expect = 8.3e-43
Identity = 122/218 (55.96%), Postives = 143/218 (65.60%), Query Frame = 0

Query: 1   MAVTKISFLVGLLAFLCLSLGSAHRVLKNNHSENQLISDSVSSGQDNHLQNSSHAELKSI 60
           MAVTK SFLVGLLAFLCLSL SA+RVLKNN +E +L++++VSS QDN LQ+ ++AELKSI
Sbjct: 1   MAVTKNSFLVGLLAFLCLSLSSANRVLKNNDAEKELLNNNVSSEQDNQLQDFNNAELKSI 60

Query: 61  PKGNIPKFSSVGPTNGDC---C------------NYGNICG----GYSCCGGSSGCPSCY 120
           P+GN+PK SSVG   GDC   C            NYG+  G     Y   GGSSGC  CY
Sbjct: 61  PEGNVPKLSSVGSGYGDCGGNCGSSGGGGYTYPPNYGSGGGSSPPNYGSGGGSSGCQPCY 120

Query: 121 TCSPCQWQECQGCQGCQECQ-ECQGCQ-SC-GCQV----------RMNNSKVKQESI-QA 180
           T SPC WQ C G QGCQ CQ  CQGCQ  C GCQ            +N+SK++ ESI   
Sbjct: 121 TYSPCPWQGCPGFQGCQGCQGGCQGCQGGCQGCQAPHPPCTFEVGTVNDSKIQDESIPMG 180

Query: 181 SEPEPPIVTIVPPVQPADHNIKSSGEANQDMKSNGGLV 186
            EPEPP++       P +H+IKSSG ANQDMKSNGGLV
Sbjct: 181 EEPEPPVL-------PENHHIKSSGGANQDMKSNGGLV 211

BLAST of CaUC11G201480 vs. NCBI nr
Match: KAG6607873.1 (hypothetical protein SDJN03_01215, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.8 bits (364), Expect = 7.3e-31
Identity = 101/191 (52.88%), Postives = 119/191 (62.30%), Query Frame = 0

Query: 1   MAVTKISFLVGLLAFLCLSLGSAHRVLKNNHSENQLISDSVSSGQDNHLQNSSHAELKSI 60
           MAVTK S LV LL  LCLS  SA+RVLK+N SEN+ I++SVS GQ+  L N  HAEL +I
Sbjct: 7   MAVTKDSILVSLLMLLCLSHSSANRVLKDNDSENESINNSVSFGQEYELHNFIHAELNNI 66

Query: 61  -PKGNIPKFSSVGPTNGDCCNYGNICGGYSC-----CGGSSGCPSCYTCSPCQWQECQGC 120
            P+G+IPKF S      DCCN+GN  GGY C     CG +SGC   Y+CSPCQW      
Sbjct: 67  VPEGSIPKFRSY----RDCCNHGNHGGGYVCPPNHACGRNSGCRPYYSCSPCQWWRYPVL 126

Query: 121 QGCQECQECQGCQSCGCQVRMNNSKVKQESIQASEPEPPIVTIVPPVQPADHNIKSSGEA 180
                         CGC V  + S V QESIQ SE +  +   VP V+PA+HNIK SG A
Sbjct: 127 P-----------PPCGCAVGKSYSMV-QESIQTSEAD--LDGNVPAVEPANHNIKFSGGA 179

Query: 181 NQDMKSNGGLV 186
           NQ+MKSNGGLV
Sbjct: 187 NQNMKSNGGLV 179

BLAST of CaUC11G201480 vs. NCBI nr
Match: CAE7457951.1 (unnamed protein product [Symbiodinium pilosum])

HSP 1 Score: 59.3 bits (142), Expect = 4.0e-05
Identity = 31/49 (63.27%), Postives = 33/49 (67.35%), Query Frame = 0

Query: 85   CGGYSCCGGSSGCPSCYTCSPCQ-WQECQGCQGCQECQECQGCQSCGCQ 133
            CGG +CCGG +GC  CY C  CQ  Q CQGC GCQ C  CQGCQ CG Q
Sbjct: 1182 CGGCACCGGCAGCQGCYGCGGCQGCQGCQGCPGCQGC-GCQGCQGCGYQ 1229

BLAST of CaUC11G201480 vs. ExPASy TrEMBL
Match: A0A0A0L3F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G637770 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 4.1e-56
Identity = 127/215 (59.07%), Postives = 149/215 (69.30%), Query Frame = 0

Query: 1   MAVTKISFLVGLLAFLCLSLGSAHRVLKNNHSENQLISDSVSSGQDNHLQNSSHAELKSI 60
           MAVT+ S LVGLLAFLCLSLGSA+R+LKNN +ENQLI D V SG++NH QNS+H ELKSI
Sbjct: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSI 60

Query: 61  PKGNIPKFSSVGPTNGDCCNYGNIC------------------------GGYSCC----- 120
           P  ++ K SS+ P NGDCC+YG  C                        GG S C     
Sbjct: 61  PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGCSGCSGGGGGGCSGCSGGGG 120

Query: 121 -GGSSGCPSCYTCSPCQWQECQGCQGCQECQECQGCQSCGCQVRMNNSKVKQESIQASEP 180
            GGSS C SC TCS CQW   QGC GCQECQ CQGCQSCGCQ  M++SKV+Q+S+Q  EP
Sbjct: 121 GGGSSSCQSCNTCSSCQW---QGCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEP 180

Query: 181 EPPIVTIVPPVQPADHNIKSSGEANQDMKSNGGLV 186
             P+VTIVPP +P D++IKSSG +NQD+KSNGGLV
Sbjct: 181 -APVVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 211

BLAST of CaUC11G201480 vs. ExPASy TrEMBL
Match: A0A5A7V9R7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003880 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.4e-05
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 0

Query: 1  MAVTKISFLVGLLAFLCLSLGSAHRVLKNNHSENQLIS 39
          MAVTK S LVGLLAFLCLSL SA+R+LKNN +ENQLI+
Sbjct: 1  MAVTKTSLLVGLLAFLCLSLSSANRILKNNDAENQLIA 38

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN55137.18.6e-5659.07hypothetical protein Csa_012773 [Cucumis sativus][more]
XP_023535133.13.7e-4355.56mesenchyme-specific cell surface glycoprotein-like [Cucurbita pepo subsp. pepo][more]
KAG6591970.18.3e-4355.96hypothetical protein SDJN03_14316, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607873.17.3e-3152.88hypothetical protein SDJN03_01215, partial [Cucurbita argyrosperma subsp. sorori... [more]
CAE7457951.14.0e-0563.27unnamed protein product [Symbiodinium pilosum][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L3F64.1e-5659.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G637770 PE=4 SV=1[more]
A0A5A7V9R74.4e-0578.95Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..185
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..185

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC11G201480.1CaUC11G201480.1mRNA