CaUC11G200950 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC11G200950
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionMediator of RNA polymerase II transcription subunit 26
LocationCiama_Chr11: 503496 .. 503783 (-)
RNA-Seq ExpressionCaUC11G200950
SyntenyCaUC11G200950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAATAAGCAGAAGGTGGAGATGGAGAGGCGAGAAGAATCGAAGAAGACGGAGCAACAACCGCCGCACTATATTTCTCCGATGAAGCCATTGACGGAAAGTGCTTACGGCGGAGGAATGTACGGCACCGAGGAGGGCCAACAGCGAAGCCTGCAGAAGAAACCTGCGAGCGACACGCAGAGCGCCGATGGAGCTGTTGAAGCGGAAATGAAGCCGAAGCATGCGCCTCCGCCGTCATCCGGCGACAGAGACATCGACATCACCGGGCAATCGTACTTCCAGTAG

mRNA sequence

ATGGAAAATAAGCAGAAGGTGGAGATGGAGAGGCGAGAAGAATCGAAGAAGACGGAGCAACAACCGCCGCACTATATTTCTCCGATGAAGCCATTGACGGAAAGTGCTTACGGCGGAGGAATGTACGGCACCGAGGAGGGCCAACAGCGAAGCCTGCAGAAGAAACCTGCGAGCGACACGCAGAGCGCCGATGGAGCTGTTGAAGCGGAAATGAAGCCGAAGCATGCGCCTCCGCCGTCATCCGGCGACAGAGACATCGACATCACCGGGCAATCGTACTTCCAGTAG

Coding sequence (CDS)

ATGGAAAATAAGCAGAAGGTGGAGATGGAGAGGCGAGAAGAATCGAAGAAGACGGAGCAACAACCGCCGCACTATATTTCTCCGATGAAGCCATTGACGGAAAGTGCTTACGGCGGAGGAATGTACGGCACCGAGGAGGGCCAACAGCGAAGCCTGCAGAAGAAACCTGCGAGCGACACGCAGAGCGCCGATGGAGCTGTTGAAGCGGAAATGAAGCCGAAGCATGCGCCTCCGCCGTCATCCGGCGACAGAGACATCGACATCACCGGGCAATCGTACTTCCAGTAG

Protein sequence

MENKQKVEMERREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKPASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ
Homology
BLAST of CaUC11G200950 vs. NCBI nr
Match: KAG6591229.1 (hypothetical protein SDJN03_13575, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024115.1 hypothetical protein SDJN02_12928, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163.3 bits (412), Expect = 1.0e-36
Identity = 85/99 (85.86%), Postives = 90/99 (90.91%), Query Frame = 0

Query: 1  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKP 60
          ME  QKVEME    RREE+KK EQ+PPHYISPM+PLTESAYGGGMYGTEEGQQ+SLQKKP
Sbjct: 1  METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGTEEGQQQSLQKKP 60

Query: 61 ASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ 96
          ASDTQSADG VE+ MKPKHAPPPSSGDRDIDITGQSYFQ
Sbjct: 61 ASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 99

BLAST of CaUC11G200950 vs. NCBI nr
Match: XP_038899828.1 (uncharacterized protein LOC120087055 [Benincasa hispida])

HSP 1 Score: 163.3 bits (412), Expect = 1.0e-36
Identity = 85/99 (85.86%), Postives = 90/99 (90.91%), Query Frame = 0

Query: 1  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKP 60
          ME+ QK+EME    RREESKK EQQPPHYISPMKPLTESAYGGGMYG EEG++RSLQKKP
Sbjct: 1  MESNQKMEMEREQQRREESKKMEQQPPHYISPMKPLTESAYGGGMYGGEEGEERSLQKKP 60

Query: 61 ASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ 96
          AS+TQSADG VE EMKPKHAPPPSSGDRDIDITGQSYFQ
Sbjct: 61 ASETQSADGPVEREMKPKHAPPPSSGDRDIDITGQSYFQ 99

BLAST of CaUC11G200950 vs. NCBI nr
Match: XP_022936823.1 (uncharacterized protein LOC111443294 [Cucurbita moschata] >XP_022976625.1 uncharacterized protein LOC111476971 [Cucurbita maxima] >XP_023535795.1 uncharacterized protein LOC111797123 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.4 bits (407), Expect = 3.9e-36
Identity = 84/99 (84.85%), Postives = 89/99 (89.90%), Query Frame = 0

Query: 1  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKP 60
          ME  QKVEME    RREE+KK EQ+PPHYISPM+PLTESAYGGGMYG EEGQQ+SLQKKP
Sbjct: 1  METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAEEGQQQSLQKKP 60

Query: 61 ASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ 96
          ASDTQSADG VE+ MKPKHAPPPSSGDRDIDITGQSYFQ
Sbjct: 61 ASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 99

BLAST of CaUC11G200950 vs. NCBI nr
Match: XP_022132786.1 (uncharacterized protein LOC111005558 [Momordica charantia])

HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33
Identity = 81/99 (81.82%), Postives = 86/99 (86.87%), Query Frame = 0

Query: 1  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKP 60
          ME  QK+EME    RREE+KK EQQPP  ISPM+PLTESAYGGGMYG EEGQQ+ L+KKP
Sbjct: 1  MERNQKIEMEREEQRREETKKMEQQPPQNISPMQPLTESAYGGGMYGAEEGQQQLLKKKP 60

Query: 61 ASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ 96
          ASDTQSADG VEA MKPKHAPPPSSGDRDIDITGQSYFQ
Sbjct: 61 ASDTQSADGPVEAGMKPKHAPPPSSGDRDIDITGQSYFQ 99

BLAST of CaUC11G200950 vs. NCBI nr
Match: XP_008452943.1 (PREDICTED: uncharacterized protein LOC103493802 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32
Identity = 81/101 (80.20%), Postives = 87/101 (86.14%), Query Frame = 0

Query: 1   MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKK- 60
           MENKQ++EME    RRE+SKK EQ+PP+YISPM+PLTESAYGGGMYGTEEG Q SLQ K 
Sbjct: 1   MENKQRIEMEREQQRREQSKKIEQEPPYYISPMQPLTESAYGGGMYGTEEGDQESLQMKK 60

Query: 61  -PASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ 96
            PAS TQSADG VEAEMK KH PPPSSGDRDIDITGQSYFQ
Sbjct: 61  VPASQTQSADGPVEAEMKLKHPPPPSSGDRDIDITGQSYFQ 101

BLAST of CaUC11G200950 vs. ExPASy TrEMBL
Match: A0A6J1IJZ9 (uncharacterized protein LOC111476971 OS=Cucurbita maxima OX=3661 GN=LOC111476971 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.9e-36
Identity = 84/99 (84.85%), Postives = 89/99 (89.90%), Query Frame = 0

Query: 1  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKP 60
          ME  QKVEME    RREE+KK EQ+PPHYISPM+PLTESAYGGGMYG EEGQQ+SLQKKP
Sbjct: 1  METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAEEGQQQSLQKKP 60

Query: 61 ASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ 96
          ASDTQSADG VE+ MKPKHAPPPSSGDRDIDITGQSYFQ
Sbjct: 61 ASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 99

BLAST of CaUC11G200950 vs. ExPASy TrEMBL
Match: A0A6J1FEB2 (uncharacterized protein LOC111443294 OS=Cucurbita moschata OX=3662 GN=LOC111443294 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.9e-36
Identity = 84/99 (84.85%), Postives = 89/99 (89.90%), Query Frame = 0

Query: 1  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKP 60
          ME  QKVEME    RREE+KK EQ+PPHYISPM+PLTESAYGGGMYG EEGQQ+SLQKKP
Sbjct: 1  METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAEEGQQQSLQKKP 60

Query: 61 ASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ 96
          ASDTQSADG VE+ MKPKHAPPPSSGDRDIDITGQSYFQ
Sbjct: 61 ASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 99

BLAST of CaUC11G200950 vs. ExPASy TrEMBL
Match: A0A6J1BT98 (uncharacterized protein LOC111005558 OS=Momordica charantia OX=3673 GN=LOC111005558 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 6.7e-34
Identity = 81/99 (81.82%), Postives = 86/99 (86.87%), Query Frame = 0

Query: 1  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKP 60
          ME  QK+EME    RREE+KK EQQPP  ISPM+PLTESAYGGGMYG EEGQQ+ L+KKP
Sbjct: 1  MERNQKIEMEREEQRREETKKMEQQPPQNISPMQPLTESAYGGGMYGAEEGQQQLLKKKP 60

Query: 61 ASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ 96
          ASDTQSADG VEA MKPKHAPPPSSGDRDIDITGQSYFQ
Sbjct: 61 ASDTQSADGPVEAGMKPKHAPPPSSGDRDIDITGQSYFQ 99

BLAST of CaUC11G200950 vs. ExPASy TrEMBL
Match: A0A1S3BV26 (uncharacterized protein LOC103493802 OS=Cucumis melo OX=3656 GN=LOC103493802 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.6e-33
Identity = 81/101 (80.20%), Postives = 87/101 (86.14%), Query Frame = 0

Query: 1   MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKK- 60
           MENKQ++EME    RRE+SKK EQ+PP+YISPM+PLTESAYGGGMYGTEEG Q SLQ K 
Sbjct: 1   MENKQRIEMEREQQRREQSKKIEQEPPYYISPMQPLTESAYGGGMYGTEEGDQESLQMKK 60

Query: 61  -PASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ 96
            PAS TQSADG VEAEMK KH PPPSSGDRDIDITGQSYFQ
Sbjct: 61  VPASQTQSADGPVEAEMKLKHPPPPSSGDRDIDITGQSYFQ 101

BLAST of CaUC11G200950 vs. ExPASy TrEMBL
Match: A0A0A0L393 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G658490 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.1e-28
Identity = 78/102 (76.47%), Postives = 84/102 (82.35%), Query Frame = 0

Query: 1   MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEE-GQQRSLQ-- 60
           MENKQK+EME    RREESKK EQ+PP+YIS M+PLTE AYGGGMYGT++ G Q SLQ  
Sbjct: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQIK 60

Query: 61  KKPASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ 96
           K PAS TQSADG V AEMK KH PPPSSGDRDIDITGQSYFQ
Sbjct: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 102

BLAST of CaUC11G200950 vs. TAIR 10
Match: AT5G42290.1 (transcription activator-related )

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-16
Identity = 50/110 (45.45%), Postives = 65/110 (59.09%), Query Frame = 0

Query: 1   MENKQKVEMERREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRS--------- 60
           ME + K E E   +  +  Q  P YIS M+P+T  AYGGG+YG ++ ++ +         
Sbjct: 1   MEKEPKQEPEEGRDKYEPHQHQPPYISQMQPVTHEAYGGGLYGQDDEKETTNLEKEAKNI 60

Query: 61  -----LQKKPASDTQSADGAVEAE-MKPKHAPPPSSGDRDIDITGQSYFQ 96
                 Q+ PASDTQSADG  E + + PKH  P SSGDRD+DITGQSY Q
Sbjct: 61  EKEPQQQRPPASDTQSADGPDEVKTLTPKHKQPASSGDRDVDITGQSYIQ 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6591229.11.0e-3685.86hypothetical protein SDJN03_13575, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038899828.11.0e-3685.86uncharacterized protein LOC120087055 [Benincasa hispida][more]
XP_022936823.13.9e-3684.85uncharacterized protein LOC111443294 [Cucurbita moschata] >XP_022976625.1 unchar... [more]
XP_022132786.11.4e-3381.82uncharacterized protein LOC111005558 [Momordica charantia][more]
XP_008452943.11.2e-3280.20PREDICTED: uncharacterized protein LOC103493802 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1IJZ91.9e-3684.85uncharacterized protein LOC111476971 OS=Cucurbita maxima OX=3661 GN=LOC111476971... [more]
A0A6J1FEB21.9e-3684.85uncharacterized protein LOC111443294 OS=Cucurbita moschata OX=3662 GN=LOC1114432... [more]
A0A6J1BT986.7e-3481.82uncharacterized protein LOC111005558 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A1S3BV265.6e-3380.20uncharacterized protein LOC103493802 OS=Cucumis melo OX=3656 GN=LOC103493802 PE=... [more]
A0A0A0L3931.1e-2876.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G658490 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G42290.11.6e-1645.45transcription activator-related [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC11G200950.1CaUC11G200950.1mRNA