CaUC11G200900 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC11G200900
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionSmall nuclear ribonucleoprotein Sm D3
LocationCiama_Chr11: 465071 .. 468408 (-)
RNA-Seq ExpressionCaUC11G200900
SyntenyCaUC11G200900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCCGGCCACGTTGTATCGGTGGAGCTTAAAAGCGGTGAGCTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGTTCCCATCTCTCTCTCTTTTTTTGGCCTTTTGTTGTTCATCATTAGATTATTCAATTTCTGTTTGTTAGTTGAATCTTTACGTCTTTTGGTCTTGGCTTTAGTTAATATCGTTGATTTTGCTTCTATATCTCTAAAGCTGACCACTTCAATATATAGTTCAAGTACTTTTTGAAATTTGTATAGAACCCTAATTTGGCGTAGTTTCCAGGAATTTCTTGCTTCAAAGGCTGTGATCCCTCTCTTTTCTCTTTTCTTAGTCTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTATATAATTTTAATACAAAATCTGCGTAGAAAATGAAATTAACGTCGTTCGAACGCCAGAAAATTGGGAGTAGGAAACACTCTCCATGTCGTTACTTTCAACAAATATAAGGAACAACAATTGCATTTAAACCCCACAGACCTGACATGTATGTTCCAAACCCAAAAGTGTAGCAATTGTCTAATGAGACTGAAAATCGGAAAAAATATGAAAAGAGTGCATTCACTGGTCATTAATGGTGACCCCAACCTCACACCCAGGTTCGATGGTGACGAAGGTAAAGCTGGTTCACTACATCTGTAGAGCTGAATAAGTCAATAACTCGAATGTGGGTGCGAATCCGTCCCAGGTTGTAATGTGGGCATTCTTATTGGTCCCGTGACCCTCAATCTCTAGTCTTTGGTGCCACAACCCAAATTGTAACTTTCTCAAGGTTCTTAACATTTTTGGAGGAGAGAGTAGAGTAATCCTGATCTTATGGATTTGCTTTTGCGTATCTTCTGACTTCTAGGCCTGACTTTTTTGGTTTTGTTGCTGTGCTTCTGGTTGTTCTGAATCTCCAAAATGAATCTGGGACAGTGTGAAAAGGAGATCTCTATGATTGAGTACCCAGCTTCTTCTCTCAGGAAACCAAAATGGCATGATCTTGATTGCAAAATCAGGATTGATTAAATAAACTAGGGACTAATGTTAACTGTGCACGTCGATTCCTTTCCTTCCGAGTGCGTCGTCTAATTGCAACTTTCTTGGTATGCAATTCACAATCACCAAATTGAATAGGAGAGATTGGCATTATCATAGATTCATATTTCTTGCTATAGACTTTTCAAATAGATTAAGGTTTACTTTTACTAATTTTCTTTGATAATCGATTAGTGTTTTGCTTATGTTATGGTTATTGCTGAATGTCTCTGAGTTTTTCCCCCTTTGCTTGCGTGTATATTATTAAGAGTCATGTTCTTTGGGTTTACTTTATGGGTTTTCTTCTATAGGATGGGAAGGTCTCACAACTTGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTATCTGTACCATCTCTTGTGTTAGATTATCCAATTACTTTCTTAGTTTTTATTCAAGGGATTTCTTATAGGATTTGGTTGGCATGCTGACATCTGTTCGTACATGACAGGTTTATGGTCATACCAGACATGCTAAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAGAATTAAAGTATTTCAACTTAAATACCTGTGAATTTTAATCCGGATGGAATCCTTGTTTGTTTTCTCTTTTTCCTAACCCATGCTTTCTGGATCTTGAAGGGTAAGGGTGCCTCGCTTGGTGTTGGCAGGGGCAGGGCTGTTGCTATGCGAGCTAAAGTAAGTCCTATGCATCTTAATTTTTGTACGGTGGTTATTTATTTCCTGGACATGTTTTGAATCAGTATGAAGATCAACTTTGTGCATTTTTTTCCACACATGAGAGGGAAGGATATGATCATTGCTTGTGTATAAGAAATTAAAGATTTATTTTAGTTTTCAAGTTTCTTAATCATCAATTTGGAAGATATTAGGGAATGTTTATTGGCACTATGACCTTCGCAATTCTCTCTTGAAGGAATCTAGAAGTTAGATTCCTTTGCACAGCACGCATGAGTGGTTGTGACCTATGAAATTACTTGTTTGTATTTATGTTTAAAAAATCAGGTTGATGATAGATTACGATGGAAAACAATTATAGAGCATGTCACAAAAATTTTGCACATTTATAAATTTGCAAAAATCAAAACAAATATCCTCTCTTTTTCAGGCTCAAGCTGCTGGCCGTGGAAGTGCACCTGGTCGGGGTGCTGCACCATCTGCCCGAAGGTGATGAAACAATGAATATAGTTTGTTATATCCTTAGTTGAAGCCTAGAAAGTCATTGGAATATCGACCATCAAGTTTCATTAGTTCCGGTATTGACATCCTCAACATTGAAGGAAGGCTATGCGTTGTTCATTTTTGTTGAAAATGGGCTAATGTCATCAACTTGATAATCTACTTTTTACTTGAGCCCATTTTATGTTGAGATCGAACTTTCCTTTACCCCCATCTTCATCTTTGTTATGTATGTATTGGATGTTCTTTGCTTCTTATCACCATAGGAGTATTGTCTTTGTGCCATCTATTCTACTTTAATTGTTGGCTGTTTGTTGTGGGGTAGGCTATGCGTCTATGATTATGAGACTAGGGAAGTTATTATCAACATCTCCATACAATTTACTTGCTTGGAATTACCTTCCTCAGAATAAATCCCTACCCAAATGGAGGGAGATCTGATTTTGAACTTTTGAATTTAAAATATCAAGTTTGAAATTTAGAGTT

mRNA sequence

ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCCGGCCACGTTGTATCGGTGGAGCTTAAAAGCGGTGAGCTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGATGGGAAGGTCTCACAACTTGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTAAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAGAATTAAAGGTAAGGGTGCCTCGCTTGGTGTTGGCAGGGGCAGGGCTGTTGCTATGCGAGCTAAAGCTCAAGCTGCTGGCCGTGGAAGTGCACCTGGTCGGGGTGCTGCACCATCTGCCCGAAGTTCCGGTATTGACATCCTCAACATTGAAGGAAGGCTATGCGTTGTTCATTTTTGTTGAAAATGGGCTAATGTCATCAACTTGATAATCTACTTTTTACTTGAGCCCATTTTATGTTGAGATCGAACTTTCCTTTACCCCCATCTTCATCTTTGTTATGTATGTATTGGATGTTCTTTGCTTCTTATCACCATAGGAGTATTGTCTTTGTGCCATCTATTCTACTTTAATTGTTGGCTGTTTGTTGTGGGGTAGGCTATGCGTCTATGATTATGAGACTAGGGAAGTTATTATCAACATCTCCATACAATTTACTTGCTTGGAATTACCTTCCTCAGAATAAATCCCTACCCAAATGGAGGGAGATCTGATTTTGAACTTTTGAATTTAAAATATCAAGTTTGAAATTTAGAGTT

Coding sequence (CDS)

ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCCGGCCACGTTGTATCGGTGGAGCTTAAAAGCGGTGAGCTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGATGGGAAGGTCTCACAACTTGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTAAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAGAATTAAAGGTAAGGGTGCCTCGCTTGGTGTTGGCAGGGGCAGGGCTGTTGCTATGCGAGCTAAAGCTCAAGCTGCTGGCCGTGGAAGTGCACCTGGTCGGGGTGCTGCACCATCTGCCCGAAGTTCCGGTATTGACATCCTCAACATTGAAGGAAGGCTATGCGTTGTTCATTTTTGTTGA

Protein sequence

MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSARSSGIDILNIEGRLCVVHFC
Homology
[Close]
BLAST of CaUC11G200900 vs. NCBI nr
Match: XP_038896140.1 (small nuclear ribonucleoprotein SmD3a-like [Benincasa hispida])

HSP 1 Score: 254.2 bits (648), Expect = 6.9e-64
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAAPSAR 132
           APGRGAAPS R
Sbjct: 121 APGRGAAPSGR 131

[Close]
BLAST of CaUC11G200900 vs. NCBI nr
Match: KAA0064637.1 (small nuclear ribonucleoprotein SmD3a-like [Cucumis melo var. makuwa] >TYK19955.1 small nuclear ribonucleoprotein SmD3a-like [Cucumis melo var. makuwa])

HSP 1 Score: 252.3 bits (643), Expect = 2.6e-63
Identity = 129/131 (98.47%), Postives = 129/131 (98.47%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 44  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 103

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 104 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 163

Query: 121 APGRGAAPSAR 132
           APGRGA PS R
Sbjct: 164 APGRGAPPSGR 174

[Close]
BLAST of CaUC11G200900 vs. NCBI nr
Match: XP_008452950.1 (PREDICTED: small nuclear ribonucleoprotein SmD3a-like [Cucumis melo])

HSP 1 Score: 252.3 bits (643), Expect = 2.6e-63
Identity = 129/131 (98.47%), Postives = 129/131 (98.47%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAAPSAR 132
           APGRGA PS R
Sbjct: 121 APGRGAPPSGR 131

[Close]
BLAST of CaUC11G200900 vs. NCBI nr
Match: XP_022151728.1 (small nuclear ribonucleoprotein SmD3b-like [Momordica charantia] >XP_022151729.1 small nuclear ribonucleoprotein SmD3b-like [Momordica charantia] >XP_022151731.1 small nuclear ribonucleoprotein SmD3b-like [Momordica charantia])

HSP 1 Score: 250.8 bits (639), Expect = 7.7e-63
Identity = 129/131 (98.47%), Postives = 129/131 (98.47%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAAPSAR 132
           A GRGA PSAR
Sbjct: 121 ATGRGAMPSAR 131

[Close]
BLAST of CaUC11G200900 vs. NCBI nr
Match: XP_004145538.1 (small nuclear ribonucleoprotein SmD3a [Cucumis sativus] >KGN55496.1 hypothetical protein Csa_012724 [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 1.3e-62
Identity = 128/131 (97.71%), Postives = 128/131 (97.71%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKV FMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVSFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAAPSAR 132
           APGRGA PS R
Sbjct: 121 APGRGAPPSGR 131

[Close]
BLAST of CaUC11G200900 vs. ExPASy Swiss-Prot
Match: Q9LM92 (Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana OX=3702 GN=SMD3B PE=2 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.4e-53
Identity = 111/132 (84.09%), Postives = 119/132 (90.15%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAK-AQAAGRG 120
           EHVFIRGSKVRFMVIPD+LK+APMFKRLDARIKGK +SLGVGRGR  AMR K A   GRG
Sbjct: 61  EHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRG-AMRGKPAAGPGRG 120

Query: 121 SAPGRGAAPSAR 132
           +  GRGA P  R
Sbjct: 121 TG-GRGAVPPVR 130

[Close]
BLAST of CaUC11G200900 vs. ExPASy Swiss-Prot
Match: Q9S7E6 (Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana OX=3702 GN=SMD3A PE=2 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 9.8e-53
Identity = 108/131 (82.44%), Postives = 114/131 (87.02%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGS VRF+VIPDMLKNAPMFK  D R KGK ASLGVGRGR  AMRAK    GRG+
Sbjct: 61  EHVFIRGSLVRFLVIPDMLKNAPMFK--DVRGKGKSASLGVGRGRGAAMRAK--GTGRGT 120

Query: 121 APGRGAAPSAR 132
             GRGA P  R
Sbjct: 121 GGGRGAVPPVR 127

[Close]
BLAST of CaUC11G200900 vs. ExPASy Swiss-Prot
Match: P62318 (Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens OX=9606 GN=SNRPD3 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.9e-34
Identity = 68/122 (55.74%), Postives = 91/122 (74.59%), Query Frame = 0 

Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPG 123
           +IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   G
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 119

Query: 124 RG 126
           RG
Sbjct: 122 RG 119

[Close]
BLAST of CaUC11G200900 vs. ExPASy Swiss-Prot
Match: P62320 (Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus OX=10090 GN=Snrpd3 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.9e-34
Identity = 68/122 (55.74%), Postives = 91/122 (74.59%), Query Frame = 0 

Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPG 123
           +IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   G
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 119

Query: 124 RG 126
           RG
Sbjct: 122 RG 119

[Close]
BLAST of CaUC11G200900 vs. ExPASy Swiss-Prot
Match: P62323 (Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis OX=8355 GN=snrpd3 PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.9e-34
Identity = 68/122 (55.74%), Postives = 91/122 (74.59%), Query Frame = 0 

Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPG 123
           +IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   G
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 119

Query: 124 RG 126
           RG
Sbjct: 122 RG 119

[Close]
BLAST of CaUC11G200900 vs. ExPASy TrEMBL
Match: A0A5D3D8Q1 (Small nuclear ribonucleoprotein Sm D3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00680 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63
Identity = 129/131 (98.47%), Postives = 129/131 (98.47%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 44  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 103

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 104 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 163

Query: 121 APGRGAAPSAR 132
           APGRGA PS R
Sbjct: 164 APGRGAPPSGR 174

[Close]
BLAST of CaUC11G200900 vs. ExPASy TrEMBL
Match: A0A1S3BVV0 (Small nuclear ribonucleoprotein Sm D3 OS=Cucumis melo OX=3656 GN=LOC103493808 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63
Identity = 129/131 (98.47%), Postives = 129/131 (98.47%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAAPSAR 132
           APGRGA PS R
Sbjct: 121 APGRGAPPSGR 131

[Close]
BLAST of CaUC11G200900 vs. ExPASy TrEMBL
Match: A0A6J1DDX8 (Small nuclear ribonucleoprotein Sm D3 OS=Momordica charantia OX=3673 GN=LOC111019638 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.7e-63
Identity = 129/131 (98.47%), Postives = 129/131 (98.47%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAAPSAR 132
           A GRGA PSAR
Sbjct: 121 ATGRGAMPSAR 131

[Close]
BLAST of CaUC11G200900 vs. ExPASy TrEMBL
Match: A0A0A0L5W4 (Small nuclear ribonucleoprotein Sm D3 OS=Cucumis sativus OX=3659 GN=Csa_4G658560 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 6.3e-63
Identity = 128/131 (97.71%), Postives = 128/131 (97.71%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKV FMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVSFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAAPSAR 132
           APGRGA PS R
Sbjct: 121 APGRGAPPSGR 131

[Close]
BLAST of CaUC11G200900 vs. ExPASy TrEMBL
Match: A0A6J1IBE9 (Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita maxima OX=3661 GN=LOC111473626 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 8.3e-63
Identity = 128/131 (97.71%), Postives = 128/131 (97.71%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRG 
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

Query: 121 APGRGAAPSAR 132
           A GRGA PSAR
Sbjct: 121 ATGRGAVPSAR 131

[Close]
BLAST of CaUC11G200900 vs. TAIR 10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 209.1 bits (531), Expect = 2.4e-54
Identity = 111/132 (84.09%), Postives = 119/132 (90.15%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAK-AQAAGRG 120
           EHVFIRGSKVRFMVIPD+LK+APMFKRLDARIKGK +SLGVGRGR  AMR K A   GRG
Sbjct: 61  EHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRG-AMRGKPAAGPGRG 120

Query: 121 SAPGRGAAPSAR 132
           +  GRGA P  R
Sbjct: 121 TG-GRGAVPPVR 130

[Close]
BLAST of CaUC11G200900 vs. TAIR 10
Match: AT1G76300.1 (snRNP core protein SMD3 )

HSP 1 Score: 207.6 bits (527), Expect = 6.9e-54
Identity = 108/131 (82.44%), Postives = 114/131 (87.02%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGS VRF+VIPDMLKNAPMFK  D R KGK ASLGVGRGR  AMRAK    GRG+
Sbjct: 61  EHVFIRGSLVRFLVIPDMLKNAPMFK--DVRGKGKSASLGVGRGRGAAMRAK--GTGRGT 120

Query: 121 APGRGAAPSAR 132
             GRGA P  R
Sbjct: 121 GGGRGAVPPVR 127

[Close]
BLAST of CaUC11G200900 vs. TAIR 10
Match: AT5G27720.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-10
Identity = 39/119 (32.77%), Postives = 67/119 (56.30%), Query Frame = 0 

Query: 7   IPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFI 66
           +P+ LL  A GH + VELK+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 67  RGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGR 125
           RG+ ++++ +PD + +    ++   R   K   +G GRGR V     A+  GRG++ G+
Sbjct: 62  RGNTIKYLRVPDEVIDKVQEEK--TRTDRKPPGVGRGRGRGVD-DGGARGRGRGTSMGK 117

[Close]
BLAST of CaUC11G200900 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 55.1 bits (131), Expect = 5.7e-08
Identity = 35/121 (28.93%), Postives = 59/121 (48.76%), Query Frame = 0 

Query: 9   VKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
           V+ L +     VS+ELK+G +  G++   + + N  L+ +  + K      L+H+ +RG+
Sbjct: 4   VRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGN 63

Query: 69  KVRFMVIPDMLKNAPMFKRLDARIKGK----GASLGVGRGRAVAMRAKAQAAGRGSAPGR 126
            +R+ ++PD L    +      R+K K    G ++G GRGR           GRG   GR
Sbjct: 64  NIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGR-----------GRGRGRGR 113

[Close]
BLAST of CaUC11G200900 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 55.1 bits (131), Expect = 5.7e-08
Identity = 35/121 (28.93%), Postives = 59/121 (48.76%), Query Frame = 0 

Query: 9   VKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
           V+ L +     VS+ELK+G +  G++   + + N  L+ +  + K      L+H+ +RG+
Sbjct: 4   VRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGN 63

Query: 69  KVRFMVIPDMLKNAPMFKRLDARIKGK----GASLGVGRGRAVAMRAKAQAAGRGSAPGR 126
            +R+ ++PD L    +      R+K K    G ++G GRGR           GRG   GR
Sbjct: 64  NIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGR-----------GRGRGRGR 113

The following BLAST results are available for this feature:
BLAST of CaUC11G200900 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038896140.16.9e-6499.24small nuclear ribonucleoprotein SmD3a-like [Benincasa hispida][more]
KAA0064637.12.6e-6398.47small nuclear ribonucleoprotein SmD3a-like [Cucumis melo var. makuwa] >TYK19955.... [more]
XP_008452950.12.6e-6398.47PREDICTED: small nuclear ribonucleoprotein SmD3a-like [Cucumis melo][more]
XP_022151728.17.7e-6398.47small nuclear ribonucleoprotein SmD3b-like [Momordica charantia] >XP_022151729.1... [more]
XP_004145538.11.3e-6297.71small nuclear ribonucleoprotein SmD3a [Cucumis sativus] >KGN55496.1 hypothetical... [more]
BLAST of CaUC11G200900 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LM923.4e-5384.09Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana OX=3702 GN=SMD3B P... [more]
Q9S7E69.8e-5382.44Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana OX=3702 GN=SMD3A P... [more]
P623185.9e-3455.74Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens OX=9606 GN=SNRPD3 PE=1 SV=... [more]
P623205.9e-3455.74Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus OX=10090 GN=Snrpd3 PE=1 SV... [more]
P623235.9e-3455.74Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis OX=8355 GN=snrpd3 PE=2 S... [more]
BLAST of CaUC11G200900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D8Q11.3e-6398.47Small nuclear ribonucleoprotein Sm D3 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A1S3BVV01.3e-6398.47Small nuclear ribonucleoprotein Sm D3 OS=Cucumis melo OX=3656 GN=LOC103493808 PE... [more]
A0A6J1DDX83.7e-6398.47Small nuclear ribonucleoprotein Sm D3 OS=Momordica charantia OX=3673 GN=LOC11101... [more]
A0A0A0L5W46.3e-6397.71Small nuclear ribonucleoprotein Sm D3 OS=Cucumis sativus OX=3659 GN=Csa_4G658560... [more]
A0A6J1IBE98.3e-6397.71Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita maxima OX=3661 GN=LOC11147362... [more]
BLAST of CaUC11G200900 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G20580.12.4e-5484.09Small nuclear ribonucleoprotein family protein [more]
AT1G76300.16.9e-5482.44snRNP core protein SMD3 [more]
AT5G27720.11.6e-1032.77Small nuclear ribonucleoprotein family protein [more]
AT3G07590.15.7e-0828.93Small nuclear ribonucleoprotein family protein [more]
AT3G07590.25.7e-0828.93Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 10..75
e-value: 5.2E-17
score: 72.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 11..74
e-value: 4.9E-15
score: 55.0
NoneNo IPR availableGENE3D2.30.30.100coord: 3..86
e-value: 2.3E-32
score: 112.3
NoneNo IPR availablePANTHERPTHR23338:SF54SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3coord: 1..128
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..128
IPR034099Small nuclear ribonucleoprotein Sm D3CDDcd01721Sm_D3coord: 8..77
e-value: 8.84293E-48
score: 146.897
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 8..128

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC11G200900.1CaUC11G200900.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0000243 commitment complex
cellular_component GO:0005829 cytosol
cellular_component GO:0034715 pICln-Sm protein complex
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0034719 SMN-Sm protein complex
cellular_component GO:0097526 spliceosomal tri-snRNP complex
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0005682 U5 snRNP
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0003723 RNA binding