CaUC10G198810 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC10G198810
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionlight-harvesting complex-like protein OHP1, chloroplastic
LocationCiama_Chr10: 34205760 .. 34206362 (-)
RNA-Seq ExpressionCaUC10G198810
SyntenyCaUC10G198810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCCTCCTCTACGATTTTTTCATCTTCTCTTCTTCCGGCCAGAGCTCCGATCTGTAACCATCAAGACGGCCGACTCTGTCTCTTTCAAATTGGGTCTTTCCGTGCCAATAACACCAGGGCTCGTGCCCCTTTCAGGGTTCAGGCCGCAAAGCCCCCGGCTGGAGTACGCTGTCTATCCTCTTCAAATTTGTGGACTTTTTCCCATTTCTGTTTCACCTCTTGAAAAAATCGTTTACATCTCAAAAGCTTTAAGAAATTCAGAATGATAAATTAATGTGGGCTTGGGAATTACCTCTTCATTTCTGTTTTGAAGGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCCAGAGCCTGCATGATAGGTCTTATTGGGACTTTCATAGTGGAGCTGGTGAGGTTTTCTTTTCTTTTTAATATAAAGAAAAGTTTCTTCTTTGTACCTTCTATATCTAAGTTTATGGGTTTTATTTGTCTGGTTTTTCAGATATTGAACAAAGGAATACTTCAGGTGATTGGAGTCGATGTTGGGAAAGGCCTGGATCTTCCTCTTTGA

mRNA sequence

ATGGCGTCCTCCTCTACGATTTTTTCATCTTCTCTTCTTCCGGCCAGAGCTCCGATCTGTAACCATCAAGACGGCCGACTCTGTCTCTTTCAAATTGGGTCTTTCCGTGCCAATAACACCAGGGCTCGTGCCCCTTTCAGGGTTCAGGCCGCAAAGCCCCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCCAGAGCCTGCATGATAGGTCTTATTGGGACTTTCATAGTGGAGCTGGTGAGGTTTTCTTTTCTTTTTAATATAAAGAAAAGTTTCTTCTTTGTACCTTCTATATCTAAGTTTATGGGTTTTATTTGTCTGGTTTTTCAGATATTGAACAAAGGAATACTTCAGGTGATTGGAGTCGATGTTGGGAAAGGCCTGGATCTTCCTCTTTGA

Coding sequence (CDS)

ATGGCGTCCTCCTCTACGATTTTTTCATCTTCTCTTCTTCCGGCCAGAGCTCCGATCTGTAACCATCAAGACGGCCGACTCTGTCTCTTTCAAATTGGGTCTTTCCGTGCCAATAACACCAGGGCTCGTGCCCCTTTCAGGGTTCAGGCCGCAAAGCCCCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCCAGAGCCTGCATGATAGGTCTTATTGGGACTTTCATAGTGGAGCTGGTGAGGTTTTCTTTTCTTTTTAATATAAAGAAAAGTTTCTTCTTTGTACCTTCTATATCTAAGTTTATGGGTTTTATTTGTCTGGTTTTTCAGATATTGAACAAAGGAATACTTCAGGTGATTGGAGTCGATGTTGGGAAAGGCCTGGATCTTCCTCTTTGA

Protein sequence

MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRFSFLFNIKKSFFFVPSISKFMGFICLVFQILNKGILQVIGVDVGKGLDLPL
Homology
BLAST of CaUC10G198810 vs. NCBI nr
Match: XP_038905156.1 (light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida])

HSP 1 Score: 202.6 bits (514), Expect = 2.4e-48
Identity = 108/150 (72.00%), Postives = 113/150 (75.33%), Query Frame = 0

Query: 1   MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELP 60
           MASSS I SSSLLPARAPIC+ QDGRLCLFQIGS RANN+R+R PFRVQAAKPPAGVELP
Sbjct: 1   MASSSAILSSSLLPARAPICSQQDGRLCLFQIGSVRANNSRSRVPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRFSFLFNIKKSFFFVPSISKFM 120
           KVEPKFEAPFLGFTKTAE+WNSRACMIGLIG F+VEL                       
Sbjct: 61  KVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVEL----------------------- 119

Query: 121 GFICLVFQILNKGILQVIGVDVGKGLDLPL 151
                   ILNKGILQVIGVDVGKGLDLPL
Sbjct: 121 --------ILNKGILQVIGVDVGKGLDLPL 119

BLAST of CaUC10G198810 vs. NCBI nr
Match: XP_022934608.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata] >XP_022983997.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita maxima] >KAG6580528.1 Light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017279.1 Light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-47
Identity = 107/150 (71.33%), Postives = 113/150 (75.33%), Query Frame = 0

Query: 1   MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELP 60
           MASS+TI SSSLLPARAPIC+ QDGRLCLFQ+GS RANN RARAPFRVQAAKPPAGVELP
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRFSFLFNIKKSFFFVPSISKFM 120
           KV+PKFEAPFLGFTKTAEIWNSRA MIGLIG F+VEL                       
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVEL----------------------- 119

Query: 121 GFICLVFQILNKGILQVIGVDVGKGLDLPL 151
                   ILNKGILQVIGVD+GKGLDLPL
Sbjct: 121 --------ILNKGILQVIGVDIGKGLDLPL 119

BLAST of CaUC10G198810 vs. NCBI nr
Match: XP_023526506.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.6 bits (501), Expect = 7.7e-47
Identity = 106/150 (70.67%), Postives = 112/150 (74.67%), Query Frame = 0

Query: 1   MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELP 60
           MASS+TI SSSLLPA APIC+ QDGRLCLFQ+GS RANN RARAPFRVQAAKPPAGVELP
Sbjct: 1   MASSATILSSSLLPASAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRFSFLFNIKKSFFFVPSISKFM 120
           KV+PKFEAPFLGFTKTAEIWNSRA MIGLIG F+VEL                       
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVEL----------------------- 119

Query: 121 GFICLVFQILNKGILQVIGVDVGKGLDLPL 151
                   ILNKGILQVIGVD+GKGLDLPL
Sbjct: 121 --------ILNKGILQVIGVDIGKGLDLPL 119

BLAST of CaUC10G198810 vs. NCBI nr
Match: XP_022145630.1 (light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia])

HSP 1 Score: 191.4 bits (485), Expect = 5.5e-45
Identity = 105/150 (70.00%), Postives = 110/150 (73.33%), Query Frame = 0

Query: 1   MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELP 60
           MASSS + SSSLLPARAP  N QDGRLCLFQIGS RANN+RAR PFRVQAAK PAGVELP
Sbjct: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRFSFLFNIKKSFFFVPSISKFM 120
           KVEPKFEAPFLGFTKTAEIWNSRACM+GL+G FIVEL                       
Sbjct: 61  KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVEL----------------------- 119

Query: 121 GFICLVFQILNKGILQVIGVDVGKGLDLPL 151
                   IL+KGILQVIGVDVGKGLDLPL
Sbjct: 121 --------ILDKGILQVIGVDVGKGLDLPL 119

BLAST of CaUC10G198810 vs. NCBI nr
Match: XP_004137791.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus] >KGN58853.1 hypothetical protein Csa_001588 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 9.1e-40
Identity = 102/152 (67.11%), Postives = 107/152 (70.39%), Query Frame = 0

Query: 1   MASSSTIFSSSLLPARAPICNHQDGRLCLFQIG-SFRANNTRARAPFRVQ-AAKPPAGVE 60
           MASSS I  SSL PARA  CNHQD R CLFQIG S RAN++RAR  FR+Q AAKPPAGVE
Sbjct: 1   MASSSVIL-SSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRFSFLFNIKKSFFFVPSISK 120
           LPKVEPKF+APFLGFTKTAEIWNSRACMIGLIG F+VEL                     
Sbjct: 61  LPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVEL--------------------- 120

Query: 121 FMGFICLVFQILNKGILQVIGVDVGKGLDLPL 151
                     ILNKGILQVIGVDVGKGLDLPL
Sbjct: 121 ----------ILNKGILQVIGVDVGKGLDLPL 120

BLAST of CaUC10G198810 vs. ExPASy Swiss-Prot
Match: O81208 (Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OHP1 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.7e-23
Identity = 70/150 (46.67%), Postives = 83/150 (55.33%), Query Frame = 0

Query: 4   SSTIFSSSLLPARAPICNHQDGR---LCLFQIGSFRANNTRARAPFRVQAAKPPAGVELP 63
           SS+  SSSL    + +  H  GR   LC            R + PF V+AAK P GV +P
Sbjct: 2   SSSPLSSSLFHPLSTLSTHCHGRRQNLCF----------NRKQQPFVVRAAKLPEGVIVP 61

Query: 64  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRFSFLFNIKKSFFFVPSISKFM 123
           K +PK +  FLGFT+TAEIWNSRACMIGLIGTFIVEL                       
Sbjct: 62  KAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVEL----------------------- 110

Query: 124 GFICLVFQILNKGILQVIGVDVGKGLDLPL 151
                   ILNKGIL++IGV++GKGLDLPL
Sbjct: 122 --------ILNKGILELIGVEIGKGLDLPL 110

BLAST of CaUC10G198810 vs. ExPASy TrEMBL
Match: A0A6J1J0W8 (light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482448 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 7.5e-48
Identity = 107/150 (71.33%), Postives = 113/150 (75.33%), Query Frame = 0

Query: 1   MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELP 60
           MASS+TI SSSLLPARAPIC+ QDGRLCLFQ+GS RANN RARAPFRVQAAKPPAGVELP
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRFSFLFNIKKSFFFVPSISKFM 120
           KV+PKFEAPFLGFTKTAEIWNSRA MIGLIG F+VEL                       
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVEL----------------------- 119

Query: 121 GFICLVFQILNKGILQVIGVDVGKGLDLPL 151
                   ILNKGILQVIGVD+GKGLDLPL
Sbjct: 121 --------ILNKGILQVIGVDIGKGLDLPL 119

BLAST of CaUC10G198810 vs. ExPASy TrEMBL
Match: A0A6J1F851 (light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111441742 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 7.5e-48
Identity = 107/150 (71.33%), Postives = 113/150 (75.33%), Query Frame = 0

Query: 1   MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELP 60
           MASS+TI SSSLLPARAPIC+ QDGRLCLFQ+GS RANN RARAPFRVQAAKPPAGVELP
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRFSFLFNIKKSFFFVPSISKFM 120
           KV+PKFEAPFLGFTKTAEIWNSRA MIGLIG F+VEL                       
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVEL----------------------- 119

Query: 121 GFICLVFQILNKGILQVIGVDVGKGLDLPL 151
                   ILNKGILQVIGVD+GKGLDLPL
Sbjct: 121 --------ILNKGILQVIGVDIGKGLDLPL 119

BLAST of CaUC10G198810 vs. ExPASy TrEMBL
Match: A0A6J1CV10 (light-harvesting complex-like protein OHP1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015030 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.7e-45
Identity = 105/150 (70.00%), Postives = 110/150 (73.33%), Query Frame = 0

Query: 1   MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELP 60
           MASSS + SSSLLPARAP  N QDGRLCLFQIGS RANN+RAR PFRVQAAK PAGVELP
Sbjct: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRFSFLFNIKKSFFFVPSISKFM 120
           KVEPKFEAPFLGFTKTAEIWNSRACM+GL+G FIVEL                       
Sbjct: 61  KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVEL----------------------- 119

Query: 121 GFICLVFQILNKGILQVIGVDVGKGLDLPL 151
                   IL+KGILQVIGVDVGKGLDLPL
Sbjct: 121 --------ILDKGILQVIGVDVGKGLDLPL 119

BLAST of CaUC10G198810 vs. ExPASy TrEMBL
Match: A0A0A0LAI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.4e-40
Identity = 102/152 (67.11%), Postives = 107/152 (70.39%), Query Frame = 0

Query: 1   MASSSTIFSSSLLPARAPICNHQDGRLCLFQIG-SFRANNTRARAPFRVQ-AAKPPAGVE 60
           MASSS I  SSL PARA  CNHQD R CLFQIG S RAN++RAR  FR+Q AAKPPAGVE
Sbjct: 1   MASSSVIL-SSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRFSFLFNIKKSFFFVPSISK 120
           LPKVEPKF+APFLGFTKTAEIWNSRACMIGLIG F+VEL                     
Sbjct: 61  LPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVEL--------------------- 120

Query: 121 FMGFICLVFQILNKGILQVIGVDVGKGLDLPL 151
                     ILNKGILQVIGVDVGKGLDLPL
Sbjct: 121 ----------ILNKGILQVIGVDVGKGLDLPL 120

BLAST of CaUC10G198810 vs. ExPASy TrEMBL
Match: A0A5A7TRS8 (High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001530 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 4.1e-38
Identity = 103/152 (67.76%), Postives = 105/152 (69.08%), Query Frame = 0

Query: 1   MASSSTIFSSSLLPARAPICNHQDGRLCLFQIG-SFRANNTRARAPFRVQ-AAKPPAGVE 60
           MASSS I  SSL PARA   N QDGR  LFQIG S RANN+RAR  FRVQ AAKPPAGVE
Sbjct: 1   MASSSVIL-SSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRFSFLFNIKKSFFFVPSISK 120
           LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTF+VEL                     
Sbjct: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVEL--------------------- 120

Query: 121 FMGFICLVFQILNKGILQVIGVDVGKGLDLPL 151
                     ILNK ILQVIGVDVGKGLDLPL
Sbjct: 121 ----------ILNKSILQVIGVDVGKGLDLPL 120

BLAST of CaUC10G198810 vs. TAIR 10
Match: AT5G02120.1 (one helix protein )

HSP 1 Score: 109.0 bits (271), Expect = 3.4e-24
Identity = 70/150 (46.67%), Postives = 83/150 (55.33%), Query Frame = 0

Query: 4   SSTIFSSSLLPARAPICNHQDGR---LCLFQIGSFRANNTRARAPFRVQAAKPPAGVELP 63
           SS+  SSSL    + +  H  GR   LC            R + PF V+AAK P GV +P
Sbjct: 2   SSSPLSSSLFHPLSTLSTHCHGRRQNLCF----------NRKQQPFVVRAAKLPEGVIVP 61

Query: 64  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRFSFLFNIKKSFFFVPSISKFM 123
           K +PK +  FLGFT+TAEIWNSRACMIGLIGTFIVEL                       
Sbjct: 62  KAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVEL----------------------- 110

Query: 124 GFICLVFQILNKGILQVIGVDVGKGLDLPL 151
                   ILNKGIL++IGV++GKGLDLPL
Sbjct: 122 --------ILNKGILELIGVEIGKGLDLPL 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038905156.12.4e-4872.00light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida][more]
XP_022934608.11.6e-4771.33light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata] >... [more]
XP_023526506.17.7e-4770.67light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita pepo subsp.... [more]
XP_022145630.15.5e-4570.00light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia][more]
XP_004137791.19.1e-4067.11light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus] >KGN... [more]
Match NameE-valueIdentityDescription
O812084.7e-2346.67Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thalian... [more]
Match NameE-valueIdentityDescription
A0A6J1J0W87.5e-4871.33light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX... [more]
A0A6J1F8517.5e-4871.33light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita moschata ... [more]
A0A6J1CV102.7e-4570.00light-harvesting complex-like protein OHP1, chloroplastic OS=Momordica charantia... [more]
A0A0A0LAI04.4e-4067.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1[more]
A0A5A7TRS84.1e-3867.76High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
Match NameE-valueIdentityDescription
AT5G02120.13.4e-2446.67one helix protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR14154UPF0041 BRAIN PROTEIN 44-RELATEDcoord: 1..147
NoneNo IPR availablePANTHERPTHR14154:SF51LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP1, CHLOROPLASTICcoord: 1..147
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 63..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC10G198810.1CaUC10G198810.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009535 chloroplast thylakoid membrane