CaUC10G198590 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC10G198590
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	H/ACA ribonucleoprotein complex subunit 4
Location	Ciama_Chr10: 34041859 .. 34045082 (-)
RNA-Seq Expression	CaUC10G198590
Synteny	CaUC10G198590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGAAGTTAAGATTTCTCATTCAAAGAATAAGAAGAAGAAGCACCGGAGCAAGGATGAGGAAGTGTCATCGGCTTTTGGTTCCGACAAGCAACCACAAAAGGATGTTGCTTATTTTATGATCAAGCCTCAGAGTTTTACTCCTCTGGTAGACACATCTCAATGCCCTATTCTTCCGAAGAACTACGACTGTCTTAATGTACATACTGGTCACTACACACATTTTTCGTATGTTTCTCCCCTCTCAAGTGGCCTCAGACTGAGTATATTAGGTATGGTATTCTCAATCTTGATAAAGCAGTGAATCCTTTGACGCACGAAGTTCTGGCTTTGATTAAGTGGGTTCTTCGGGTTGATAGAACGAGCCACGTGGTACTCTCGACCCGAATGTAAGTGGTAACCTGATTGTGTGCATTGATCGAGCCACGTGACTCATGAAATTGCAACAAGGTGTGGGTAAGGAGTATGTGTGTGTTGCTCGGTTGCATTCTTTTGTGACCAATCTTTCTAATGTTTCTCGAGCTTTGGAGACGCTTATTGGGGTTGTGTTTCAGCGGTCGCCGTTGATATCGACCGTAAAAATATGGTTTAGGATTAAAATCGTTTAATATTTTCATATTTTATGATTGGTGGATGGATACTACTTGTGAATTATTTTTATCTCTTGGTGATAGACGTAAATGTGCGTTATGTGTCATTTTTTATATAAATATTATTTTATGTTTTTGTTATAGCGAGAGGGAGAGAATTTGAAATTCTAGCATGAGAGAATGAGAGTACATACTTTTCATGGTAGCTAAGCTTTGCATTTTATGTTATTTTAATAGTAAATGTAATTTCAAATTTGTAGATATCTATCATGTTACTATATTTTAAACTCAATTCTACTCAAATAGTTAAAATCATTATATTATTGACCAATATGTATAAAATTGTTGGTCTCGAGTTAAAACGGAGCAAAGAATTAAAGAAAAGAAAAAGAGGGTAAAAAAAATAAAGGAGAGGAATAACATTTTTGACATTTGCTTTCAACAGGGACTCCATGGCCCAATGGATAAGGCGCTGGTCTACGGAACCAGAGATTCTGGGTTCGATCCCCAGTGGAGTCGTTTCAGTTTTTTCCTTTTGTTTTGTCTTTTTTTTTTGGATAAAGTGATATAGGGATCGAATGGGGCTTTCTTTGGGTTGGAACTGGAAGCCCTCTCAAAGCGAGTATGTTCATCCAATAGCGACTATCCACGTGTCACCCAAGAGAGGTATCGGCAAACAGAGTGGGAACGCTCCCACTTTCTGCCCATAATGCTTAAAAACTCGCGCGTTGCTGCCTTCTCTTGGTTCCTTCATCCTCTCGGTTTCCCGATCAACAATGGCTTCATCATCTTCTGGTACCTACCTTTTCCATTTTATTTTGTTCATGATCATTATCTTTACAAAATGCCATGTAATTGATCGGCAAGTTGAATAGTTACAGTCATCGAAATCAGTTCAATAATTTAGGTTACTTGATCTATATGATTACCGCGTTTCAGGAATTTGAACACCAAAGGTATCTAAACTTCGTTACTGATCGAGTAGAAGAATAATTCCGCTTAAACTTTCATTTTCATAACTAAAACCAACCAGCCGATGTTTTGAGTTATACTGATGCATGGTTACAAACTGAAATTCTCGATGTTATCTGCCTTAATCTGCAGTTGTAAATTCTTTGAGTGTACTGATTGGATATGATTTCATTTTTGTTTGAAATGGATCAATTACAATTGTTTGATTGATTTCGAATCAACGCAGTCTTTCGTTCTTGAATTTTGATTTTCTGTGTACCGGAGAGATGGTTCTACCTGCCGAATGTGCAGCAGTAAACTAATCGATGTACTGCTTTGAGATGATTCTATTTGGGAAATGAAACAGCTACAACAACTAGTGTGATAGAAGACCAGTTTAAAGAATTTTGTACAAGATGCAATATGGAAGAAGATGTAAGTTGGAAGTTTAAACTTGTATATAACAGAAATCAGTTGTAAAGGCTTTAACCAACTTCTCTGTTTCTTCCTATTGCAAAACCGTTTTGACGAATTTGTTATTAGTTCGGGATTTTCAAGAATCTTATGGAATCCAAATTTCCATGACAAATATCAGTTCTGAATTGACTGGTGTTTTCCTCACTCTGCAGGAAAAATGTTATTCTATTTTACGCATCTTAGTAATTCCTTGCACTCTTCTCTTTATGTAGGGTTAATAGCTTCCTGAACTGTTATTTCCAGCAATTCATTGAGGATATAACTGCCGGAGAATGTCAAGTATTCGAGAGATAGAGTCGGTATCTTTGGCGCCAAACATTCTCGCTGGCAGGTAGATTGCCATTGCAGTTTCCACAATCTAGTAAGCAGGGACAGCCTCAGCATGCCTGATGATCAATACAACTGTTAACTGCTGTCTATAAATTATATTACTAGCCTCTTGCACTAACAGTGTTTCTGGCATACTTTCGCTAATGTTCTGATCTTCCCTTTCTTTTTTGGTTCGAGTTAATATGATTCGAAGAGGCGTATTTATCTATACCAGATCAACCAGTTTGGAAGTGCTGCTCAGTGGCCATGATTTGTGCTTGACACGTCAGGTGCATTCTATTATTTTTTCTTATTTCTAATGTCCGTGCATAGTATTAGAGATGTTTAAATGATTGTGGCTTGTTAGGCAGACTTGTATTATAGTTTAGACAGAACAGTGTAAAGACTTGACCTTCATTCTCGGTTTGCAATTAGCGGCAGCGCTAGGAAGGACAATATAGGTGTATCTCGTCTTCATATGTTTTTCCTCTCTTTTATTTTGGATGAAAAGAACATGACAATGTTGTATAAAGTGTTAGAAATAAAATCAGCGGAATATATATATATATATATTTAAATAATCCAACATATATTCATTAGTAATCAAAATAACAATAAAGAAAATCCAGTAACTTTTGGATTGAAGCATATTAATAAACCTTGTCCATAGGGCACAGAGAAGATGTACCTCCATTGTACAGTATTTGGCCCTCCACTTTGGAGATACAGCAATTCTTCTAGAGACTTTGTGTGTAGCTAAGCTCTCTTACAAATCCTTGATTGCTTAGATGCTCAAAATAAAAAATAGTCAATAAAAAAACTTCAATAAAGAAAATTGTGGATGAAAGGATTGTATACAAGTGAAAAGAAAGATGTTTCTGAATACTAGCGATGG

mRNA sequence

ATGTCGGAAGTTAAGATTTCTCATTCAAAGAATAAGAAGAAGAAGCACCGGAGCAAGGATGAGGAAGTGTCATCGGCTTTTGGTTCCGACAAGCAACCACAAAAGGATGTTGCTTATTTTATGATCAAGCCTCAGAGTTTTACTCCTCTGGTAGACACATCTCAATGCCCTATTCTTCCGAAGAACTACGACTGTCTTAATGTACATACTGGTCACTACACACATTTTTCGTATGTTTCTCCCCTCTCAAGTGGCCTCAGACTGAGTATATTAGGTATGAACGAGCCACGTGGTACTCTCGACCCGAATGGACTCCATGGCCCAATGGATAAGGCGCTGGTCTACGGAACCAGAGATTCTGGGTTCGATCCCCAGTGGAGTCCCCTCTCAAAGCGAGTATGTTCATCCAATAGCGACTATCCACGTGTCACCCAAGAGAGGTATCGGCAAACAGAGTGGGAACGCTCCCACTTTCTGCCCATAATGCTTAAAAACTCGCGCGTTGCTGCCTTCTCTTGGTTCCTTCATCCTCTCGGTTTCCCGATCAACAATGGCTTCATCATCTTCTGTCTTTCGTTCTTGAATTTTGATTTTCTGTGTACCGGAGAGATGGTTCTACCTGCCGAATGTGCAGCAGTAAACTAATCGATGTACTGCTTTGAGATGATTCTATTTGGGAAATGAAACAGCTACAACAACTAGTGTGATAGAAGACCAGTTTAAAGAATTTTGTACAAGATGCAATATGGAAGAAGATGGTTAATAGCTTCCTGAACTGTTATTTCCAGCAATTCATTGAGGATATAACTGCCGGAGAATGTCAAGTATTCGAGAGATAGAGTCGGTATCTTTGGCGCCAAACATTCTCGCTGGCAGGTAGATTGCCATTGCAGTTTCCACAATCTATTAATATGATTCGAAGAGGCGTATTTATCTATACCAGATCAACCAGTTTGGAAGTGCTGCTCAGTGGCCATGATTTGTGCTTGACACGTCAGGTGCATTCTATTATTTTTTCTTATTTCTAATGTCCGTGCATAGTATTAGAGATGTTTAAATGATTGTGGCTTGTTAGGCAGACTTGTATTATAGTTTAGACAGAACAGTGTAAAGACTTGACCTTCATTCTCGGTTTGCAATTAGCGGCAGCGCTAGGAAGGACAATATAGGTGTATCTCGTCTTCATATGTTTTTCCTCTCTTTTATTTTGGATGAAAAGAACATGACAATGTTGTATAAAGTGTTAGAAATAAAATCAGCGGAATATATATATATATATATTTAAATAATCCAACATATATTCATTAGTAATCAAAATAACAATAAAGAAAATCCAGTAACTTTTGGATTGAAGCATATTAATAAACCTTGTCCATAGGGCACAGAGAAGATGTACCTCCATTGTACAGTATTTGGCCCTCCACTTTGGAGATACAGCAATTCTTCTAGAGACTTTGTGTGTAGCTAAGCTCTCTTACAAATCCTTGATTGCTTAGATGCTCAAAATAAAAAATAGTCAATAAAAAAACTTCAATAAAGAAAATTGTGGATGAAAGGATTGTATACAAGTGAAAAGAAAGATGTTTCTGAATACTAGCGATGG

Coding sequence (CDS)

ATGTCGGAAGTTAAGATTTCTCATTCAAAGAATAAGAAGAAGAAGCACCGGAGCAAGGATGAGGAAGTGTCATCGGCTTTTGGTTCCGACAAGCAACCACAAAAGGATGTTGCTTATTTTATGATCAAGCCTCAGAGTTTTACTCCTCTGGTAGACACATCTCAATGCCCTATTCTTCCGAAGAACTACGACTGTCTTAATGTACATACTGGTCACTACACACATTTTTCGTATGTTTCTCCCCTCTCAAGTGGCCTCAGACTGAGTATATTAGGTATGAACGAGCCACGTGGTACTCTCGACCCGAATGGACTCCATGGCCCAATGGATAAGGCGCTGGTCTACGGAACCAGAGATTCTGGGTTCGATCCCCAGTGGAGTCCCCTCTCAAAGCGAGTATGTTCATCCAATAGCGACTATCCACGTGTCACCCAAGAGAGGTATCGGCAAACAGAGTGGGAACGCTCCCACTTTCTGCCCATAATGCTTAAAAACTCGCGCGTTGCTGCCTTCTCTTGGTTCCTTCATCCTCTCGGTTTCCCGATCAACAATGGCTTCATCATCTTCTGTCTTTCGTTCTTGAATTTTGATTTTCTGTGTACCGGAGAGATGGTTCTACCTGCCGAATGTGCAGCAGTAAACTAA

Protein sequence

MSEVKISHSKNKKKKHRSKDEEVSSAFGSDKQPQKDVAYFMIKPQSFTPLVDTSQCPILPKNYDCLNVHTGHYTHFSYVSPLSSGLRLSILGMNEPRGTLDPNGLHGPMDKALVYGTRDSGFDPQWSPLSKRVCSSNSDYPRVTQERYRQTEWERSHFLPIMLKNSRVAAFSWFLHPLGFPINNGFIIFCLSFLNFDFLCTGEMVLPAECAAVN

Homology

[Close]

BLAST of CaUC10G198590 vs. NCBI nr
Match: XP_022145634.1 (H/ACA ribonucleoprotein complex subunit 4 [Momordica charantia])

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-22
Identity = 65/101 (64.36%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 1   MSEVKISHSKNKKKKHRSKDEEVSSAFGSDKQPQKDVAYFMIKPQSFTPLVDTSQCPILP 60
           MSEV+IS S+ KKKKHRSKDE+VS A GSD+QPQKD A FMIKPQSFTP VDTSQ PIL 
Sbjct: 1   MSEVEISRSEKKKKKHRSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDCLNVHTGHYT-----HFSYVSPLSSGLRLSILGMNEP 97
           KNYD LNV TGHYT     +     PL+  +R  IL +++P
Sbjct: 61  KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKP 101

[Close]

BLAST of CaUC10G198590 vs. NCBI nr
Match: XP_022983194.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita maxima])

HSP 1 Score: 114.8 bits (286), Expect = 9.4e-22
Identity = 66/101 (65.35%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1   MSEVKISHSKNKKKKHRSKDEEVSSAFGSDKQPQKDVAYFMIKPQSFTPLVDTSQCPILP 60
           MS V+IS S+ KKKKHRSKD+EVS A GSD+QP KDVA FMIKPQSFTP VDTSQ PIL 
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPSVDTSQWPILL 60

Query: 61  KNYDCLNVHTGHYT----HFSYVS-PLSSGLRLSILGMNEP 97
           KNYD LNV TGHYT     FS +  PL+  +R  IL +++P
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKP 101

[Close]

BLAST of CaUC10G198590 vs. NCBI nr
Match: KAG6580549.1 (H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-21
Identity = 66/101 (65.35%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1   MSEVKISHSKNKKKKHRSKDEEVSSAFGSDKQPQKDVAYFMIKPQSFTPLVDTSQCPILP 60
           MS V+IS S+ KKKKHRSKD+EVS A GSD+QP KDVA FMIKPQSFTP VDTSQ PIL 
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDCLNVHTGHYT----HFSYVS-PLSSGLRLSILGMNEP 97
           KNYD LNV TGHYT     FS +  PL+  +R  IL +++P
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKP 101

[Close]

BLAST of CaUC10G198590 vs. NCBI nr
Match: XP_022934839.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata])

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-21
Identity = 66/101 (65.35%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1   MSEVKISHSKNKKKKHRSKDEEVSSAFGSDKQPQKDVAYFMIKPQSFTPLVDTSQCPILP 60
           MS V+IS S+ KKKKHRSKD+EVS A GSD+QP KDVA FMIKPQSFTP VDTSQ PIL 
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDCLNVHTGHYT----HFSYVS-PLSSGLRLSILGMNEP 97
           KNYD LNV TGHYT     FS +  PL+  +R  IL +++P
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKP 101

[Close]

BLAST of CaUC10G198590 vs. NCBI nr
Match: KAG7017302.1 (H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-21
Identity = 66/101 (65.35%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1   MSEVKISHSKNKKKKHRSKDEEVSSAFGSDKQPQKDVAYFMIKPQSFTPLVDTSQCPILP 60
           MS V+IS S+ KKKKHRSKD+EVS A GSD+QP KDVA FMIKPQSFTP VDTSQ PIL 
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDCLNVHTGHYT----HFSYVS-PLSSGLRLSILGMNEP 97
           KNYD LNV TGHYT     FS +  PL+  +R  IL +++P
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKP 101

[Close]

BLAST of CaUC10G198590 vs. ExPASy Swiss-Prot
Match: Q9LD90 (H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF5 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.3e-13
Identity = 45/101 (44.55%), Postives = 55/101 (54.46%), Query Frame = 0


Query: 1  MSEVKISHSKNKKKKHRSKDEEVSSAFGSDKQPQKDVAYFMIKPQSFTPLVDTSQCPILP 60
          M+EV ISHSK KK+     D               D   +MIKPQSFTP +DTSQ PIL 
Sbjct: 1  MAEVDISHSKKKKQDKTEND-------------AADTGDYMIKPQSFTPAIDTSQWPILL 60

Query: 61 KNYDCLNVHTGHYT-----HFSYVSPLSSGLRLSILGMNEP 97
          KNYD LNV TGHYT     H     PL   +R  ++ +++P
Sbjct: 61 KNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKP 88

[Close]

BLAST of CaUC10G198590 vs. ExPASy Swiss-Prot
Match: Q54T81 (Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=nola4 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.1e-04
Identity = 33/88 (37.50%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 14 KKHRSKDEEVSSAFGSDKQPQKDVAYFMIKPQSFTPLVDTSQCPILPKNYDCLNVHTGHY 73
          KK +SK  E S+      Q  + V    IKP+  TP++DTS+ P+L KNYD L+V TGHY
Sbjct: 5  KKSKSKSSEKST------QEVEQV----IKPEK-TPILDTSKWPLLLKNYDQLSVRTGHY 64

Query: 74 T-----HFSYVSPLSSGLRLSILGMNEP 97
          T     H     P+   ++  I+ +++P
Sbjct: 65 TPIPNGHSPLKRPIKEYVKYGIINLDKP 81

[Close]

BLAST of CaUC10G198590 vs. ExPASy Swiss-Prot
Match: O60832 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Homo sapiens OX=9606 GN=DKC1 PE=1 SV=3)

HSP 1 Score: 48.1 bits (113), Expect = 1.4e-04
Identity = 34/79 (43.04%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 2  SEVKISHSKNKKKKHRSKDEEVSSAFGSDKQPQKDVA------YFMIKPQSFTPLVDTSQ 61
          +EV I   K+KKKK R               P++DVA       F+IKP+S    +DTSQ
Sbjct: 4  AEVIILPKKHKKKKERK------------SLPEEDVAEIQHAEEFLIKPESKVAKLDTSQ 63

Query: 62 CPILPKNYDCLNVHTGHYT 75
           P+L KN+D LNV T HYT
Sbjct: 64 WPLLLKNFDKLNVRTTHYT 70

[Close]

BLAST of CaUC10G198590 vs. ExPASy Swiss-Prot
Match: Q5ZJH9 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 4.1e-04
Identity = 34/78 (43.59%), Postives = 41/78 (52.56%), Query Frame = 0


Query: 14 KKHRSKDEEVSSAFGSDKQPQKDVA------YFMIKPQSFTPLVDTSQCPILPKNYDCLN 73
          KK R KD+           P +DVA       F+IKP+S    +DTSQ P+L KN+D LN
Sbjct: 10 KKRRKKDKR--------SLPDEDVADIQHTEEFLIKPESRVAQLDTSQWPLLLKNFDKLN 69

Query: 74 VHTGHYTHFSYVSPLSSG 86
          V T HYT      PL SG
Sbjct: 70 VLTTHYT------PLPSG 73

[Close]

BLAST of CaUC10G198590 vs. ExPASy Swiss-Prot
Match: O44081 (H/ACA ribonucleoprotein complex subunit 4 OS=Drosophila melanogaster OX=7227 GN=Nop60B PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 7.0e-04
Identity = 31/88 (35.23%), Postives = 51/88 (57.95%), Query Frame = 0


Query: 1  MSEVKISHSKNKKKKHRSKDEEVSSAFGSDKQPQKDVAYFMIKPQSFTPLVDTSQCPILP 60
          M++V++   + +KKK + K+E +    G D    +    F IKP S    +DTSQ P+L 
Sbjct: 1  MADVEV---RKEKKKKKIKEEPLD---GDDIGTLQKQGNFQIKPSSKIAELDTSQWPLLL 60

Query: 61 KNYDCLNVHTGHYTHFSY-VSPLSSGLR 88
          KN+D LN+ + HYT  ++  SPL+  ++
Sbjct: 61 KNFDKLNIRSNHYTPLAHGSSPLNRDIK 82

[Close]

BLAST of CaUC10G198590 vs. ExPASy TrEMBL
Match: A0A6J1CVU2 (H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC111015035 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.4e-23
Identity = 65/101 (64.36%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 1   MSEVKISHSKNKKKKHRSKDEEVSSAFGSDKQPQKDVAYFMIKPQSFTPLVDTSQCPILP 60
           MSEV+IS S+ KKKKHRSKDE+VS A GSD+QPQKD A FMIKPQSFTP VDTSQ PIL 
Sbjct: 1   MSEVEISRSEKKKKKHRSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDCLNVHTGHYT-----HFSYVSPLSSGLRLSILGMNEP 97
           KNYD LNV TGHYT     +     PL+  +R  IL +++P
Sbjct: 61  KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKP 101

[Close]

BLAST of CaUC10G198590 vs. ExPASy TrEMBL
Match: A0A6J1J6M3 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111481852 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.5e-22
Identity = 66/101 (65.35%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1   MSEVKISHSKNKKKKHRSKDEEVSSAFGSDKQPQKDVAYFMIKPQSFTPLVDTSQCPILP 60
           MS V+IS S+ KKKKHRSKD+EVS A GSD+QP KDVA FMIKPQSFTP VDTSQ PIL 
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPSVDTSQWPILL 60

Query: 61  KNYDCLNVHTGHYT----HFSYVS-PLSSGLRLSILGMNEP 97
           KNYD LNV TGHYT     FS +  PL+  +R  IL +++P
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKP 101

[Close]

BLAST of CaUC10G198590 vs. ExPASy TrEMBL
Match: A0A6J1F3Q2 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111441884 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.9e-22
Identity = 66/101 (65.35%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1   MSEVKISHSKNKKKKHRSKDEEVSSAFGSDKQPQKDVAYFMIKPQSFTPLVDTSQCPILP 60
           MS V+IS S+ KKKKHRSKD+EVS A GSD+QP KDVA FMIKPQSFTP VDTSQ PIL 
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDCLNVHTGHYT----HFSYVS-PLSSGLRLSILGMNEP 97
           KNYD LNV TGHYT     FS +  PL+  +R  IL +++P
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKP 101

[Close]

BLAST of CaUC10G198590 vs. ExPASy TrEMBL
Match: A0A6J1FP65 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111446978 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-21
Identity = 65/101 (64.36%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 1   MSEVKISHSKNKKKKHRSKDEEVSSAFGSDKQPQKDVAYFMIKPQSFTPLVDTSQCPILP 60
           MS+V+IS S+ KKKKHRSKDEEVS   GSD+QP KDVA F+IKPQSFTP VDTSQ PIL 
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDCLNVHTGHYT----HFSYVS-PLSSGLRLSILGMNEP 97
           KNYD LNV TGHYT     FS +  PL   +R  IL +++P
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKP 101

[Close]

BLAST of CaUC10G198590 vs. ExPASy TrEMBL
Match: A0A6J1I1U9 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111470135 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 8.5e-21
Identity = 64/101 (63.37%), Postives = 74/101 (73.27%), Query Frame = 0


Query: 1   MSEVKISHSKNKKKKHRSKDEEVSSAFGSDKQPQKDVAYFMIKPQSFTPLVDTSQCPILP 60
           MS+V+IS S+ KKKKHRSKDEEVS    SD+QP KDVA F+IKPQSFTP VDTSQ PIL 
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDCLNVHTGHYT----HFSYVS-PLSSGLRLSILGMNEP 97
           KNYD LNV TGHYT     FS +  PL   +R  IL +++P
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKP 101

[Close]

BLAST of CaUC10G198590 vs. TAIR 10
Match: AT3G57150.1 (homologue of NAP57 )

HSP 1 Score: 75.5 bits (184), Expect = 5.9e-14
Identity = 45/101 (44.55%), Postives = 55/101 (54.46%), Query Frame = 0


Query: 1  MSEVKISHSKNKKKKHRSKDEEVSSAFGSDKQPQKDVAYFMIKPQSFTPLVDTSQCPILP 60
          M+EV ISHSK KK+     D               D   +MIKPQSFTP +DTSQ PIL 
Sbjct: 1  MAEVDISHSKKKKQDKTEND-------------AADTGDYMIKPQSFTPAIDTSQWPILL 60

Query: 61 KNYDCLNVHTGHYT-----HFSYVSPLSSGLRLSILGMNEP 97
          KNYD LNV TGHYT     H     PL   +R  ++ +++P
Sbjct: 61 KNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKP 88

The following BLAST results are available for this feature:

BLAST of CaUC10G198590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145634.1	1.1e-22	64.36	H/ACA ribonucleoprotein complex subunit 4 [Momordica charantia]	[more]
XP_022983194.1	9.4e-22	65.35	H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita maxima]	[more]
KAG6580549.1	1.2e-21	65.35	H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp...	[more]
XP_022934839.1	1.2e-21	65.35	H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata]	[more]
KAG7017302.1	1.2e-21	65.35	H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp...	[more]

BLAST of CaUC10G198590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LD90	8.3e-13	44.55	H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF...	[more]
Q54T81	1.1e-04	37.50	Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium discoideum O...	[more]
O60832	1.4e-04	43.04	H/ACA ribonucleoprotein complex subunit DKC1 OS=Homo sapiens OX=9606 GN=DKC1 PE=...	[more]
Q5ZJH9	4.1e-04	43.59	H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE...	[more]
O44081	7.0e-04	35.23	H/ACA ribonucleoprotein complex subunit 4 OS=Drosophila melanogaster OX=7227 GN=...	[more]

BLAST of CaUC10G198590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CVU2	5.4e-23	64.36	H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1J6M3	4.5e-22	65.35	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1F3Q2	5.9e-22	65.35	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1FP65	1.7e-21	64.36	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1I1U9	8.5e-21	63.37	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of CaUC10G198590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57150.1	5.9e-14	44.55	homologue of NAP57	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036974	PUA domain superfamily	GENE3D	2.30.130.10	PUA domain	coord: 36..89 e-value: 1.6E-9 score: 39.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR23127:SF3	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4	coord: 7..95
IPR004802	tRNA pseudouridine synthase B family	PANTHER	PTHR23127	CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5	coord: 7..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC10G198590.1	CaUC10G198590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034470	ncRNA processing
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0006396	RNA processing
molecular_function	GO:0016853	isomerase activity
molecular_function	GO:0003723	RNA binding