CaUC10G192640 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC10G192640
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionstructure-specific endonuclease subunit slx1
LocationCiama_Chr10: 27264284 .. 27269781 (-)
RNA-Seq ExpressionCaUC10G192640
SyntenyCaUC10G192640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTTAGAAAAAAAAAAAATTAACTGTCAACCAAACGGCCAGTTTCGAACCCACGCCAAAGAAGAGGAACGAAAAAAAGAATATGAGACTGCTCTCTCACACATTTCGTTGCCAAAAACCCCCAATCTCAAATCCACAACTTTCCAAATCTTCTTCTTCCTCAAATAAGGATCTAACACTCGTCGTCAAATCAGAGCTGAAGCCGAACCCGAAGCAATGGTGTGTGTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTAGGCGTCACCCTCGACTTGGATCGACGGTATCTCGAATTTCTTCCTTTCCGTTTCTTGTTCGAACCACCGATTCCATGATTTGATGTGTGAAAATTTATCTGGGTCATGTTCGATTGGCCTTAAAAAGTGATATTTCGTGCTTTTAGCTTAGACATTTAGCTTGGTATTGTTTAATCATCAATTCAATCCAAAATATTAAAAAACAGATAGGTTATGGTAAATTGAATAATTTATTTAATACCTTGTTGCTGTTGTTGTGGGCTTGAAAGGTTGCACAAGGTGCAAGAAATTGTTGTACGAATGATCCCAATTTCATGGCGGAAATGTTGTTGAGCCATACTTTGAAAATAAGGATGTACAACCTTTTGCTTGCGTCACTCCCTCGCGCTGGTGTTCGTCCTCCCTCCTTGCATTCGACTAATCCAATACAACAGTTTCCTCACACACTAGGTCTTTTCCTCCCCCACTCTCTCTACTCTTCCTCTCTTTCACTCACGCTCGTCACTCTGAAAAAAAGTGTTGGCAAGCGGTTTGTGGCATCATCAAAAGTTTATTCTTCATTGTTTTCAAAACTTGGGTCAAACAACATTTTAGGCGTGGTATTTGAGTCATTTGTACGAAAATCTTAAAAGTCCAAAGAGTGGGAATCGTTGTTAAGTGAAGAGGAAATGATATTACACAGGTTCGAGATTTCCTACTATATCATGTTTCATCGCCAATTAAAAAGCTTAAGCTTGCATTGGTGGTTTATGGTGGTTTTAATATTTTATCAATACTATAGAGCACGTAACTAAACTTGAGTCACAATTTGGTGCATGAAGGTGAGGTTGGTCATTGAAAAAGAACTTTGGGTTAGCTGTTGAACTGCTCGATTAATCAGTCGAGGTATTGATTTTCAGTAGAGTTTGTAAGTTCGGGAGTGTTTTGGGATGATATTCATATTGTTGAGAAGTTATGTTATGAGAGGATAGTGGAGGTTGAGGGAAGAGAAGTTTCAATAATTGTGAATATGCTTCTGACTTAAAGTCAATAATCAATTCTGAAAAATGAAGTACTGTTCAAGATGTTTCATGGTTCTTATCAAGAGATATGCTTTAAATGTTTTTTTTACTCCAGATCCTATCCTCTAGTGAATTCTATTGCCAAAGAAATTTGCACTTTGCAACTTTTAGATGTCCTTTATGTGTAAGAGGTATTCAAATATTACTTAACGTCATAAAGTTGTATTCTTCTACAGTTTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGCTTTGCGCATGCACAATTCATGGTTTTAAAGACCAAAGTCAAGGTATCCATTCAAAATAGAACTTCTAGAATCATGCTGCAAGTTGGGCTCCAATTTCAAGGGCATTGCTTGATTGTTTGTAGTCATTCTAGACATTATGTTTCCTTGGGCTTTTGAAAACATGAGACATTACCTTGTTTCTTTGTTGTGGCAGTGATCCTGCTAAGTTAGATGGCAATGGTCAGATGTATTTCATATTTTACGGCACTGTGAGAACTATTTCCTTGAGGAACAATCTTTATTCAATGATCTACCTCAATATTTATTATAAGATGCATCCTAATCACCATAAGTTGGTCTTGTGATTAAAAAGGACCATGTAAATAATAAAGACCTTAGAGGGAATAGGTTTCAATCATGATGGTCACCTACTTAGGATTTAATGTCCTATGAGTTACCTTGGCAACCAAAGTAGTAGGATTACGTAGCTTTTCTGTGAAAATAGTATAGGTGCGTGTAAGCTAGCTTGAAAGATCATGAATATTTAAATAAATAAATAAAAATAATAAATAATAAAACTTTTACATTTTCTTAGAAGCCTGAAAATACTTTACGTGGAGGAGAGAAACCTGATAGCATTCCTCCTCTTAAATCCTTATATAAATGCGATGTTTTCCTTTTTGATAAGTATAAAGAAATAGTAGAATCGAGGCCAGAGAAGATTTCCCTGGTGAGTGGATCTGTAAGTACTGCAGAAAACTGTCCTAGAAGAGCCACAATTCTTGAAGGATATGTGCCGAGTGTGGAAATACTTGGTACTCGCAGTTGAAGAAGTGATGGGGGCAGAGGGAGGCAAAAGATAACGTGGTGACTTGGGATTTCATTTCATACTCCAAAAGACACTAGGAATAAGAAGAAATTTTAGATCATCACGCCGAAACACCCTAAAATTTTAACTCATCAATTAAAAGGTTGAAAATTTTCTTTATCTGTTCATGATACAAATATAAATTCATCCAAGGTTGAAGGCGCTACTCTAGTCGTTAGACCAGCAAAGCAAGTGCCGCAAGACCCTGTGCCAGAATACCGTAGGCATACATTCTGGTATCTGAAACTTCTTATCCTAGCAACATAACTAGAAGTACTAATGAGACTGAAAATATATTGGCAAACACACAATGTAGTATGCAATATTTGAGACTGAAAATAGGAAAATATATTATGTAGTATGCAGCATTTGAACTGTTTGGTACTCTTAAGTTCTTAATTGGCCCCCCAAAACAACATTGGTAATTGGAGTAGGAGTTGAACATTTCTAAATTAAGGGTGCATATCTGGCTGGAAACTAACCTCCTAATCTTGAACTATATAACGGTGCAACCTGCGAGTTAAGAGTATTTAGGAGTGAGATCAGGACAGAGATAGGAAACTCTTGGATACTCCCTTAGCTACACATTCTTTAATAATTAAACGGTTGCTATCATTTTTTCCCCCATAAAGTAGAGATCTAGAAACAAGCTCATGAATTTCGTTAATATCTATGAGAGGAGCACGAATGAATGCAATAATAAATACAGACACTGTGATAGGATTATAGTGGAATTCTTTTTCCCTGTTTGGGAAAGGAACACAAATTTTGCAGGTGAATTGGTAAAGGACAGTTTCAGGGCTCCATAATCCATGCCCCAAATTTGTGTAATACACCAGCCATGATATTTATGATTTCCATGGATGAGACAACTACATGCATAAGTATTGCTGTTTGGATTGACTTATTTATGCAAATAAACAGACTTATTCAATATTTTTTACAGCTTGCATATTGCAACCGGCATTCCTCTTGCTTGTCTATTTGGTTAATCATCAGCTCTCAAATTATATGCATGTTAAGACTCATACCTACCAAATTTGGCCTTCCATCTTTGGTGTATTTAGTTTTTTTTTCCTTTAGAAATGAAAAAAGCCGCAACTTTCAGATCACCATGGTATCCCATTTATCATCACATGGCATTGGAAGGGATGTAGTTCGGAGTGTAATTATTGCTAACGAGGCAAATGAAGTAATTGAAAAGATTTCTAGTACTCTCGTAGTACTATACTCCATTTGTTCTCGCTATAAATTGGTCTTCATAAATGTTAGTGGACCCACTCTATTTAAAAAAGAAAAAAAAAGAAGAAAGAAATGGAATTAGTGGGGAATGTCGGTTGAATTTCTACAATAGATTATAGTTTGAGTTGCCGACTGATTTCTCATTCTCCAAATCCTTTAACCGACTCAAATTTCAGCTGAGTGTCGACGGGAGGAAGAAGAAGAGGTATAGGGCAAGTCGGTGTAGAATTCTGATCGAAACCGTGGTGTAATTGAAGCTAAAACTGAAGGCTGGTCTAGTGTCGTGCAGTTTGAGCAAAGTCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGCTGATGTGGCACATTATAAATAGAGGGAGGATTGGAAAATTTTCTACACTCCCGTAGTATAGGAAATCTTCCCAACTTGTTGTCATCATCTGGATGACTTTTGGCAAGAAGTAACCCGTACTACTGACTGTGGAACTTAAATCGTCGAGTTTCACTTGTGTTTGTTGATTGTATGTTATGGATGGGGTGCTGAATTAATTTGATGAAGATCTTGTTTCTGGTTGCATTTATGATTTATATTGTTGTTGCTATGAGCCTTCTTCAAGTTCATGTCCCTAAATCATTCCTAAGAAATTTTATCGACACAATGACTTTTATTTGAAACCTTACACTAAGTTTTATTTGGTTCAACCCAATAATCGAAATTCTCGAGTTTTTTGACCAGAAATGTTCTGTAAAATCATTCCCACCTCATTACTGATGCTGTTTTTGTATCTTTTATATGCAGCTTGTGAGTTTGAAACGAAATGGAAAGAAGTTTCAAGGAAAATATCCTATAAGAAGAAGGATGATATGGGAAAGCAAGTAGATGATCAAACAATAAGGTTGCTCAAGCACAGGCAAAGAGCTCTGGGAAAAGTGAAGTGTTTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAACTGGATCCTTTCTGATTCTTTACATGGGTTGGGGTTTTTCTTTTTCTTTTACCATATTTATATATTTATCTTCAATTTTATGAATTAATGATTGTTTATAAGATAAATGTCTAATGTTTAAAATTGTGTTAAAA

mRNA sequence

TATTTAGAAAAAAAAAAAATTAACTGTCAACCAAACGGCCAGTTTCGAACCCACGCCAAAGAAGAGGAACGAAAAAAAGAATATGAGACTGCTCTCTCACACATTTCGTTGCCAAAAACCCCCAATCTCAAATCCACAACTTTCCAAATCTTCTTCTTCCTCAAATAAGGATCTAACACTCGTCGTCAAATCAGAGCTGAAGCCGAACCCGAAGCAATGGTGTGTGTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTAGGCGTCACCCTCGACTTGGATCGACGTGATCCTGCTAAGTTAGATGGCAATGGTCAGATGTATTTCATATTTTACGGCACTAAAACTGTCCTAGAAGAGCCACAATTCTTGAAGGATATGTGCCGAGTGTGGAAATACTTGGTTGAAGGCGCTACTCTAGTCGTTAGACCAGCAAAGCAAGTGCCGCAAGACCCTGTGCCAGAATACCCTTGTGAGTTTGAAACGAAATGGAAAGAAGTTTCAAGGAAAATATCCTATAAGAAGAAGGATGATATGGGAAAGCAAGTAGATGATCAAACAATAAGGTTGCTCAAGCACAGGCAAAGAGCTCTGGGAAAAGTGAAGTGTTTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAACTGGATCCTTTCTGATTCTTTACATGGGTTGGGGTTTTTCTTTTTCTTTTACCATATTTATATATTTATCTTCAATTTTATGAATTAATGATTGTTTATAAGATAAATGTCTAATGTTTAAAATTGTGTTAAAA

Coding sequence (CDS)

ATGAGACTGCTCTCTCACACATTTCGTTGCCAAAAACCCCCAATCTCAAATCCACAACTTTCCAAATCTTCTTCTTCCTCAAATAAGGATCTAACACTCGTCGTCAAATCAGAGCTGAAGCCGAACCCGAAGCAATGGTGTGTGTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTAGGCGTCACCCTCGACTTGGATCGACGTGATCCTGCTAAGTTAGATGGCAATGGTCAGATGTATTTCATATTTTACGGCACTAAAACTGTCCTAGAAGAGCCACAATTCTTGAAGGATATGTGCCGAGTGTGGAAATACTTGGTTGAAGGCGCTACTCTAGTCGTTAGACCAGCAAAGCAAGTGCCGCAAGACCCTGTGCCAGAATACCCTTGTGAGTTTGAAACGAAATGGAAAGAAGTTTCAAGGAAAATATCCTATAAGAAGAAGGATGATATGGGAAAGCAAGTAGATGATCAAACAATAAGGTTGCTCAAGCACAGGCAAAGAGCTCTGGGAAAAGTGAAGTGTTTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAACTGGATCCTTTCTGA

Protein sequence

MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLVEGATLVVRPAKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
Homology
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BLAST of CaUC10G192640 vs. NCBI nr
Match: XP_004151512.1 (structure-specific endonuclease subunit SLX1 [Cucumis sativus] >KGN58557.1 hypothetical protein Csa_001754 [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 2.1e-52
Identity = 125/198 (63.13%), Postives = 137/198 (69.19%), Query Frame = 0 

Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKT 60
           MRLLSHTFRC KPPISNP LSKSSSSS+KD TL+VKSE KP  KQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLVEGATLVVRP- 120
           YVGVTLD DRR       NG+   I  G K                      AT   RP 
Sbjct: 61  YVGVTLDFDRR---LKQHNGE---IKGGAK----------------------ATRAGRPW 120

Query: 121 --AKQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKV 180
             A  +         CEFE+KWK+VSRKISY KK++D+GK +DDQT+RLLKHR+RALGKV
Sbjct: 121 ICACTIHGFKDQSQACEFESKWKKVSRKISYEKKEEDVGKLLDDQTLRLLKHRERALGKV 170

Query: 181 KCLFDCSQFEFDWKLDPF 195
           KCLFDCSQFEFDWKLDPF
Sbjct: 181 KCLFDCSQFEFDWKLDPF 170

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BLAST of CaUC10G192640 vs. NCBI nr
Match: XP_038903984.1 (structure-specific endonuclease subunit slx1 isoform X1 [Benincasa hispida])

HSP 1 Score: 214.5 bits (545), Expect = 7.9e-52
Identity = 125/195 (64.10%), Postives = 134/195 (68.72%), Query Frame = 0 

Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKT 60
           MRLLS TFR QKP  SN QLSKSSSSS KD  L+VKSE  P PKQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSQTFRTQKPSNSNSQLSKSSSSSTKDPILIVKSE--PKPKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLVEGATLVVRPA 120
           YVGVTLD DRR       NG+   I  G K       +L   C +  +  +G        
Sbjct: 61  YVGVTLDFDRR---LKQHNGE---IKGGAKATRTGRPWL-CACTIHGFKDQGQA------ 120

Query: 121 KQVPQDPVPEYPCEFETKWKEVSRKISYKKK-DDMGKQVDDQTIRLLKHRQRALGKVKCL 180
                       CEFE+KWKEVSRKISYKKK DDMGKQVDDQT+RLLKHRQRALGKVKCL
Sbjct: 121 ------------CEFESKWKEVSRKISYKKKEDDMGKQVDDQTLRLLKHRQRALGKVKCL 168

Query: 181 FDCSQFEFDWKLDPF 195
           FDCSQFEF+WKLDPF
Sbjct: 181 FDCSQFEFNWKLDPF 168

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BLAST of CaUC10G192640 vs. NCBI nr
Match: XP_008461838.1 (PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo] >XP_008461839.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo])

HSP 1 Score: 211.1 bits (536), Expect = 8.7e-51
Identity = 122/195 (62.56%), Postives = 134/195 (68.72%), Query Frame = 0 

Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKT 60
           MRLLS TFRCQKPPISNP+L KSSSSS K  TL+VK E +P PKQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLE-EPKPKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLVEGATLVVRPA 120
           YVGVTLD DRR       NG+   I  G K             R W          +   
Sbjct: 61  YVGVTLDFDRR---LKQHNGE---IKGGAKAT--------QAGRPWI-----CACTIHGF 120

Query: 121 KQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKVKCL 180
           K   Q       CEFE+KWK+VSRKISY KK+DD+GKQ+D+QT+RLLKHRQRALGKVKCL
Sbjct: 121 KDQSQ------ACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCL 169

Query: 181 FDCSQFEFDWKLDPF 195
           FDCS FEFDWKLDPF
Sbjct: 181 FDCSHFEFDWKLDPF 169

[Close]
BLAST of CaUC10G192640 vs. NCBI nr
Match: XP_022982643.1 (structure-specific endonuclease subunit slx1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 173.3 bits (438), Expect = 2.0e-39
Identity = 107/197 (54.31%), Postives = 125/197 (63.45%), Query Frame = 0 

Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKT 60
           MRLLS TFR QK PIS+P++SKSSSSS K  TL +KSE  P  K+WCVYLIISSN PIKT
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLTIKSE--PETKKWCVYLIISSNPPIKT 60

Query: 61  YVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLVEGATLVVRP- 120
           YVGVTLD DRR       NG+   I  G K                      AT   RP 
Sbjct: 61  YVGVTLDFDRR---LKQHNGE---IKGGAK----------------------ATRAGRPW 120

Query: 121 --AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVK 180
             A ++         CEFE+KWKE+ RK+S+ +K+    +VDDQT+RLLK RQRALGKVK
Sbjct: 121 ICACKIHGFKNQSQACEFESKWKEICRKMSHMRKE----EVDDQTLRLLKQRQRALGKVK 163

Query: 181 CLFDCSQFEFDWKLDPF 195
            LFDC+QFEFDW+LDPF
Sbjct: 181 GLFDCTQFEFDWELDPF 163

[Close]
BLAST of CaUC10G192640 vs. NCBI nr
Match: XP_022934184.1 (structure-specific endonuclease subunit slx1 [Cucurbita moschata])

HSP 1 Score: 171.0 bits (432), Expect = 1.0e-38
Identity = 106/196 (54.08%), Postives = 124/196 (63.27%), Query Frame = 0 

Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKT 60
           MRLLS TFR QK PIS+P++SKSSSSS K  TL+VKSE  P PK+WCVYLIISSN PIKT
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSE--PEPKKWCVYLIISSNPPIKT 60

Query: 61  YVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLVEGATLVVRP- 120
           YVGVTLD DRR       NG+   I  G K                      AT   RP 
Sbjct: 61  YVGVTLDFDRR---LKQHNGE---IKGGAK----------------------ATRAGRPW 120

Query: 121 --AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVK 180
             A ++         CEFE+KWKE+ RK+ + +K+    +VDD T+RLLK RQRALGKVK
Sbjct: 121 ICACKIHGFKDQSQACEFESKWKEICRKMCHMRKE----EVDDVTLRLLKQRQRALGKVK 162

Query: 181 CLFDCSQFEFDWKLDP 194
            LFDC+QFEFDW+LDP
Sbjct: 181 GLFDCTQFEFDWELDP 162

[Close]
BLAST of CaUC10G192640 vs. ExPASy TrEMBL
Match: A0A0A0LCZ9 (GIY-YIG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G683170 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.0e-52
Identity = 125/198 (63.13%), Postives = 137/198 (69.19%), Query Frame = 0 

Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKT 60
           MRLLSHTFRC KPPISNP LSKSSSSS+KD TL+VKSE KP  KQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLVEGATLVVRP- 120
           YVGVTLD DRR       NG+   I  G K                      AT   RP 
Sbjct: 61  YVGVTLDFDRR---LKQHNGE---IKGGAK----------------------ATRAGRPW 120

Query: 121 --AKQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKV 180
             A  +         CEFE+KWK+VSRKISY KK++D+GK +DDQT+RLLKHR+RALGKV
Sbjct: 121 ICACTIHGFKDQSQACEFESKWKKVSRKISYEKKEEDVGKLLDDQTLRLLKHRERALGKV 170

Query: 181 KCLFDCSQFEFDWKLDPF 195
           KCLFDCSQFEFDWKLDPF
Sbjct: 181 KCLFDCSQFEFDWKLDPF 170

[Close]
BLAST of CaUC10G192640 vs. ExPASy TrEMBL
Match: A0A1S3CFH5 (structure-specific endonuclease subunit slx1 OS=Cucumis melo OX=3656 GN=LOC103500344 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 4.2e-51
Identity = 122/195 (62.56%), Postives = 134/195 (68.72%), Query Frame = 0 

Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKT 60
           MRLLS TFRCQKPPISNP+L KSSSSS K  TL+VK E +P PKQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLE-EPKPKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLVEGATLVVRPA 120
           YVGVTLD DRR       NG+   I  G K             R W          +   
Sbjct: 61  YVGVTLDFDRR---LKQHNGE---IKGGAKAT--------QAGRPWI-----CACTIHGF 120

Query: 121 KQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKVKCL 180
           K   Q       CEFE+KWK+VSRKISY KK+DD+GKQ+D+QT+RLLKHRQRALGKVKCL
Sbjct: 121 KDQSQ------ACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCL 169

Query: 181 FDCSQFEFDWKLDPF 195
           FDCS FEFDWKLDPF
Sbjct: 181 FDCSHFEFDWKLDPF 169

[Close]
BLAST of CaUC10G192640 vs. ExPASy TrEMBL
Match: A0A6J1J5C9 (structure-specific endonuclease subunit slx1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481456 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 9.7e-40
Identity = 107/197 (54.31%), Postives = 125/197 (63.45%), Query Frame = 0 

Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKT 60
           MRLLS TFR QK PIS+P++SKSSSSS K  TL +KSE  P  K+WCVYLIISSN PIKT
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLTIKSE--PETKKWCVYLIISSNPPIKT 60

Query: 61  YVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLVEGATLVVRP- 120
           YVGVTLD DRR       NG+   I  G K                      AT   RP 
Sbjct: 61  YVGVTLDFDRR---LKQHNGE---IKGGAK----------------------ATRAGRPW 120

Query: 121 --AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVK 180
             A ++         CEFE+KWKE+ RK+S+ +K+    +VDDQT+RLLK RQRALGKVK
Sbjct: 121 ICACKIHGFKNQSQACEFESKWKEICRKMSHMRKE----EVDDQTLRLLKQRQRALGKVK 163

Query: 181 CLFDCSQFEFDWKLDPF 195
            LFDC+QFEFDW+LDPF
Sbjct: 181 GLFDCTQFEFDWELDPF 163

[Close]
BLAST of CaUC10G192640 vs. ExPASy TrEMBL
Match: A0A6J1F1V2 (structure-specific endonuclease subunit slx1 OS=Cucurbita moschata OX=3662 GN=LOC111441428 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 4.8e-39
Identity = 106/196 (54.08%), Postives = 124/196 (63.27%), Query Frame = 0 

Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKT 60
           MRLLS TFR QK PIS+P++SKSSSSS K  TL+VKSE  P PK+WCVYLIISSN PIKT
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSE--PEPKKWCVYLIISSNPPIKT 60

Query: 61  YVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLVEGATLVVRP- 120
           YVGVTLD DRR       NG+   I  G K                      AT   RP 
Sbjct: 61  YVGVTLDFDRR---LKQHNGE---IKGGAK----------------------ATRAGRPW 120

Query: 121 --AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVK 180
             A ++         CEFE+KWKE+ RK+ + +K+    +VDD T+RLLK RQRALGKVK
Sbjct: 121 ICACKIHGFKDQSQACEFESKWKEICRKMCHMRKE----EVDDVTLRLLKQRQRALGKVK 162

Query: 181 CLFDCSQFEFDWKLDP 194
            LFDC+QFEFDW+LDP
Sbjct: 181 GLFDCTQFEFDWELDP 162

[Close]
BLAST of CaUC10G192640 vs. ExPASy TrEMBL
Match: A0A6J1DGL6 (structure-specific endonuclease subunit SLX1 OS=Momordica charantia OX=3673 GN=LOC111020266 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 106/198 (53.54%), Postives = 123/198 (62.12%), Query Frame = 0 

Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKD---LTLVVKSELKPNPKQWCVYLIISSNSP 60
           MRLLSHTFRC K PISNP+   SSSSS KD    TL  +S+LKP P  WCVYLIISSNSP
Sbjct: 33  MRLLSHTFRCHKSPISNPK--PSSSSSTKDPSAATLSFESQLKPKP--WCVYLIISSNSP 92

Query: 61  IKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLVEGATLVV 120
            KTYVGVTL+  RR       NG+   I  G K             R W         ++
Sbjct: 93  FKTYVGVTLNFSRR---LKQHNGE---IKGGAKATRAG--------RPWV-----CACMI 152

Query: 121 RPAKQVPQDPVPEYPCEFETKWKEVSRKISYK-KKDDMGKQVDDQTIRLLKHRQRALGKV 180
              K   Q       CEFE+KWKEVSRKI++K KKDD  +Q D+Q +RLLK+RQRAL KV
Sbjct: 153 HGFKDQSQ------ACEFESKWKEVSRKIAHKRKKDDEEEQADEQKLRLLKNRQRALEKV 201

Query: 181 KCLFDCSQFEFDWKLDPF 195
           K +FDCS+FEFD +LDPF
Sbjct: 213 KFMFDCSRFEFDGQLDPF 201

[Close]
BLAST of CaUC10G192640 vs. TAIR 10
Match: AT5G43210.1 (Excinuclease ABC, C subunit, N-terminal )

HSP 1 Score: 86.3 bits (212), Expect = 3.0e-17
Identity = 68/199 (34.17%), Postives = 91/199 (45.73%), Query Frame = 0 

Query: 2   RLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELK-------PNPKQWCVYLIISS 61
           RLLS TF   K   SNP+  +  +  N    + + S          P  K W VYLI+S+
Sbjct: 3   RLLSRTFPSVKLRDSNPKAPEFKNLKNSQTQVPIPSSSSPQENSKIPKSKSWSVYLILST 62

Query: 62  NSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVW--KYLVEG 121
             PIKTYVG+T D  RR       NG+   I  G K             R W    ++ G
Sbjct: 63  TEPIKTYVGITTDFSRR---LKQHNGE---IRGGAKA--------SSAGRPWLCACIITG 122

Query: 122 ATLVVRPAKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRA 181
            T + + +              FE+KWK  +RK+  +KKD+   Q D     LL+HR+RA
Sbjct: 123 FTCLSQAS-------------SFESKWKIFTRKLPRRKKDEDMSQSD----ALLQHRRRA 170

Query: 182 LGKVKCLFDCSQFEFDWKL 192
           L KV+   DCS  E DWK+
Sbjct: 183 LNKVEESLDCSYLETDWKI 170

The following BLAST results are available for this feature:
BLAST of CaUC10G192640 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004151512.12.1e-5263.13structure-specific endonuclease subunit SLX1 [Cucumis sativus] >KGN58557.1 hypot... [more]
XP_038903984.17.9e-5264.10structure-specific endonuclease subunit slx1 isoform X1 [Benincasa hispida][more]
XP_008461838.18.7e-5162.56PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo] >XP_00846... [more]
XP_022982643.12.0e-3954.31structure-specific endonuclease subunit slx1 isoform X1 [Cucurbita maxima][more]
XP_022934184.11.0e-3854.08structure-specific endonuclease subunit slx1 [Cucurbita moschata][more]
BLAST of CaUC10G192640 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC10G192640 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCZ91.0e-5263.13GIY-YIG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G683170 PE=... [more]
A0A1S3CFH54.2e-5162.56structure-specific endonuclease subunit slx1 OS=Cucumis melo OX=3656 GN=LOC10350... [more]
A0A6J1J5C99.7e-4054.31structure-specific endonuclease subunit slx1 isoform X1 OS=Cucurbita maxima OX=3... [more]
A0A6J1F1V24.8e-3954.08structure-specific endonuclease subunit slx1 OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1DGL61.3e-3653.54structure-specific endonuclease subunit SLX1 OS=Momordica charantia OX=3673 GN=L... [more]
BLAST of CaUC10G192640 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G43210.13.0e-1734.17Excinuclease ABC, C subunit, N-terminal [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR20208:SF13EMB|CAB76036.1coord: 133..193
NoneNo IPR availablePANTHERPTHR20208STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1coord: 22..71
NoneNo IPR availablePANTHERPTHR20208:SF13EMB|CAB76036.1coord: 22..71
NoneNo IPR availablePANTHERPTHR20208STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1coord: 133..193

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC10G192640.1CaUC10G192640.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000724 double-strand break repair via homologous recombination
cellular_component GO:0033557 Slx1-Slx4 complex
molecular_function GO:0017108 5'-flap endonuclease activity
molecular_function GO:0008821 crossover junction endodeoxyribonuclease activity