CaUC10G192250 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC10G192250
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionSm-like protein LSM7
LocationCiama_Chr10: 26771113 .. 26775252 (+)
RNA-Seq ExpressionCaUC10G192250
SyntenyCaUC10G192250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGGGCCGGAAGAGAAATTGGGCCGGAGTCCAACTGTCTATGGTTTGGAGGGTACTTTTTCCCGCCATCGACCATTTCTCTCAACGAGCAAATCTAGGGCACATTCTTTCCGCTCCTCACCACTTCCATTGAAAGTAAGCTTCAATTCACTCTCCTTCTTTGCACAAATTTCGGTTTTATGCACTCTTCTTATGCTCATTGTAGCTTTCAGTTCTTCAATATTGATTTCCAGATCCATATAATGCCCTAACTTCCCCAAATTTATTTTCATCGACCAGCCGATGGAATTTTTTATTTCGCTCGTAGTAATTTGTCGCATTTCTCGGATATTTCAGGTTTCTGGTGCGTTTAATTTTACGGAGGAGCTGAGGAAACGATTGCGCGATGGTAAATTTCTGAACGATTTCTTCAATTGGAATATTGACTGTTGCTGATTACGAAGTATAATGTGGCATTCGTATCGTTTGTTTAATCAGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAAGGCGTCCAAGTGAAGCTTACCGGCGGCAGACAAGGTTATTTCTACTAATTATGCTTATAGTATTACTGGACAATTGTTTACGATTCGTTACTTTCGGATTAGTAAGCTTTTTATTCAAGTGTTTGTTCGTGTGTTGTGGTCCAGAGGATCAAGGCACATAATCGAATGTTCGATTTTGATTTTGTTTTTCTTTATCGGTGTTTTCTTTTTGTTTTTAAATGCTAGAAAAGTGCTTTGTGAACCTTATTTTCCATTGACAGTTACTGGAACGCTCAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTATAGAGTTTCTAAGAGGTAACGAATTAACTGGATACCAGCAGAATAGATGGGATTTGTGGAATTTTGTAGGCTTGTAGACTGAAAGAGCTCGCTGAGTATTGATTTTTCTTATTTATCATCACCTTCCTTTATCTGAAGGCTAATTTAAATGTTCAGGAAATAATTAGAGAGAGAGAGAGTGTGTGAGAATCATTTGATATTGGATGAAGAGGCACAAATTAAGAATTTAATTTATCAGTAACATAAGCAGACGAATAGTTTTCTATTGTACTCAAAGAAAAAAATATATAGTTTTTCCTATTAGAATAGATAGAGGTTTCTATTCTGTTGATTTAACGGATTAAGATGTGGCAGTGTAGCAAATATATTTAACGGATTAAGTATATTTCCAATGGATATGTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCAATAGAAAAACAGGTATGTCATTGATATGATGAACTAAATGAATAACTATGTTGTTTTATTTTTATTTTGAATCTTGGATATATTTTAAATTTACATTAGGCTGTTGCATAAATTAGCATGCTCAAATTGCACTATGATCTTGTAAACTTTTGCATGACATCAGTTTGGATTTTATTTGTATACCCATGTACTATTATAAGATTTTGCTTGAATAAAAGTTGCAAATATGTGCAAATCTATATCAATTTCTTTCCTAATATTTTCTTTTATAAAAAGTCTTTCATAATATACGAAAGCCATCATTTTTTTTTCTTTCTGTTGTTTAATCTTTTTCTTTCTATTGTTACTTGTAAGAGGATGATTAATCAATTCATAGGCATAAATGAAATTCTGATTGTACATGTATGTGTGAATATCAATACTAAGTAATCAAAAGGCGTGGACAAAAGGGTTAGATAAGCAATTTCATCTTCCAATAGGCCAATTTTTTTGTTCTTTTATTATTATTATTAAATTTTAAACAATAAATTAAAATAAATTATAAAAATTTATATATATATAAAATAATTTTTTTTAAAAAAATAAAAAATAAAAAATAAAAATAAAAAAAGAAAAAGAAAAAAAACAGTTGTGAACCTCTAGATTATTTATCATCTGTGAGGATACATGTCAAGGGAAGTTTCAAGAGCCTCCTGTCTAGCATTTCCTACTTAAATCTAATGACAACTATTTAGCTTATGTATACTCACAGATATGGCTAACAACCTCACCCACGTCTCACCCCCAAGTATGACAGACACACCTACTAACATTATTCCCTCACATTCCCCCTCCCCTTACACACTGATACACCGTGACTGTTGAAGGCCTATCAAGAGTATATAAATTAGAGGCCAAATCTAGATAGCTCTCAGCACTTATCCAAGGTCCAAACCCTGTCTTCCTAATCTTTTTTTTTTTTTGTCTCCTTCCAAATTTCCCACAAAAAAGCTTTGATGGGTCGGATCCACACACATCCTATTTGAACATATGCTCATGAAGAATATTGGAACAAGGCTTGATTATATGCTACAGAAGTACCATTGAAAGCTGGAGCCCAGAAACTTCCAGTAGCTTATATCTACAAGGACTGACTGAGTGGGAAGTCCTATTAATCCTCAAAATTTCCTGTTTTGTAACTACACTTTAGACACCAAACCATTAACTTGGATTGGAAGGTCTATTTATAACCCTTCCTTGGGGTCCTGGGGAAAGGGGATACCTTATCCCATTGTCCCTAAGGTTGTTTTATTGAGGCTTTTGCTGCCTAAATAATATCTTATGTTTCTCATTAAAATAAGAAGTAAAAAGTAAGAACTCTCAAAATATCCTTATAGTGTTAATATAAAATTCAGTTACTAACTGGCTGATGGGTTCATTGACTTTCATCGGGATTTGCATCTGCTTTCGCTGTCTCATTCACCAAGTATGAACTTGCAAATTAGATTAGGACACAAGCATGGGAATTTAATATAGGTGAGACTCTTGAGCAACATTTTTTATTTGCATCTTAATTCATAGGTTAAAATATCATTTTGGACCTATACTTTAAGGTTCATCCCATTTTAATCCTTGTATTGTACTTTCAAATATTCAAATATAGTTGTGTTTGGGATCAAAATTATATATTCGCTTACTTCATACTGCACGGTAACAAAAAGGCTCTTTCCCAGTCTTTATTTTCCATAATCAGTTTTAGTTTTGTGGTTATGTGTTTCTGTTGTTTTGATTTTTGTCCTCTACCCCATTTTCTTAATCCTCAAATTCTCTTCGGTCGACTTAGTCATGTTTATCTCTTCTGTGGTAATAATGGCCTTTTACTGATGTTTATTAGGAACCCTTTTAGAATGAGTAATAAGTTAAAAATTGTCCTTATACCTGTTCCTGCTGTGCTTCAATGACATCAGAGGAAAATTTTGATATATTGACTAGTTTTTTTCCCTCTTTTCTCTGCAGATCCTGATGATCCATTGAAGACAACAGATCAAACCCGGCCTCTTGGCCTAATCGTATGATTCTTACTATCTACATATTTTCATTGTTGTTCAAAATAAAACAACTTTGATGAAAGCCTTGGATACCATGAACAATTTTATCAATTTTTCTTAGGAGTAATATTGTTTAAGCATGCAGCTTTCGACTTTATTTTGGCCATTTCAGTTATCTGTGCGCTAAACACAGATTAGATGGTCATAGTTAACTTGAAATTTTCAGAGGTTTTATTTATTTTTATAAAAAGAAGTAGCTATCATAAGTTACTCTGACTGAAATCCTTCGTCTCTAAGGACTGGACAAAGGCCTGTGTGTTCTGGCCGAGCATGTTTCTATCATTTGAATAATTTGTATATACATGTGCACTGTGCAATTGTTCACCTCTGCTATCCACTTGCACCATCAACTGACTTGCAAACTTTTTATGCTACTGCTCAATCATTTTGAATTTCTTGTGTGCTTTACGCATTCTCTTACTCAGTTTTTTTCCCCCTTTTTATTATTGTAATTTTAGGGGTAAGGGCATGGTTAACTATTTATTATGAAAATTGGTTGAAAATTTTAAATTATTCTATCACTAGGAAAAATTGAAAGTTATGGGTTCTTCTTAAGCGTGCATGTGCAGAAGAAGAAAATAAGTGTTCTTTAAGGCGTGTTTCTTTGTTCATATAGATTCTTTTCTTCAGTATTGGCTGGCTAGGAGTCTGTATGATTAATTTGCGTACACTATTCACTGCAGGTCTGCAGGGGGACTGCTGTAATGCTTGTGTCTCCAGTTGATGGTACCGACGAGATTGCTAACCCCTTCATCCAACCGGATGGTGCATAG

mRNA sequence

ATGATCGGGCCGGAAGAGAAATTGGGCCGGAGTCCAACTGTCTATGGTTTGGAGGGTACTTTTTCCCGCCATCGACCATTTCTCTCAACGAGCAAATCTAGGGCACATTCTTTCCGCTCCTCACCACTTCCATTGAAATCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAAGGCGTCCAAGTGAAGCTTACCGGCGGCAGACAAGTTACTGGAACGCTCAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTATAGAGTTTCTAAGAGATCCTGATGATCCATTGAAGACAACAGATCAAACCCGGCCTCTTGGCCTAATCGTCTGCAGGGGGACTGCTGTAATGCTTGTGTCTCCAGTTGATGGTACCGACGAGATTGCTAACCCCTTCATCCAACCGGATGGTGCATAG

Coding sequence (CDS)

ATGATCGGGCCGGAAGAGAAATTGGGCCGGAGTCCAACTGTCTATGGTTTGGAGGGTACTTTTTCCCGCCATCGACCATTTCTCTCAACGAGCAAATCTAGGGCACATTCTTTCCGCTCCTCACCACTTCCATTGAAATCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAAGGCGTCCAAGTGAAGCTTACCGGCGGCAGACAAGTTACTGGAACGCTCAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTATAGAGTTTCTAAGAGATCCTGATGATCCATTGAAGACAACAGATCAAACCCGGCCTCTTGGCCTAATCGTCTGCAGGGGGACTGCTGTAATGCTTGTGTCTCCAGTTGATGGTACCGACGAGATTGCTAACCCCTTCATCCAACCGGATGGTGCATAG

Protein sequence

MIGPEEKLGRSPTVYGLEGTFSRHRPFLSTSKSRAHSFRSSPLPLKSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Homology
[Close]
BLAST of CaUC10G192250 vs. NCBI nr
Match: XP_038903588.1 (sm-like protein LSM7 [Benincasa hispida] >XP_038903589.1 sm-like protein LSM7 [Benincasa hispida] >KAA0048332.1 sm-like protein LSM7 [Cucumis melo var. makuwa])

HSP 1 Score: 199.9 bits (507), Expect = 1.5e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 62  DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]
BLAST of CaUC10G192250 vs. NCBI nr
Match: XP_004149601.1 (sm-like protein LSM7 [Cucumis sativus] >XP_004149602.1 sm-like protein LSM7 [Cucumis sativus] >KGN58602.1 hypothetical protein Csa_001125 [Cucumis sativus])

HSP 1 Score: 199.5 bits (506), Expect = 1.9e-47
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 62  DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]
BLAST of CaUC10G192250 vs. NCBI nr
Match: XP_011625467.1 (sm-like protein LSM7 [Amborella trichopoda] >XP_011625468.1 sm-like protein LSM7 [Amborella trichopoda] >XP_020526240.1 sm-like protein LSM7 [Amborella trichopoda])

HSP 1 Score: 196.8 bits (499), Expect = 1.3e-46
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTRPLGLIVCRGTAVMLVSP DGTDEI+NPF+QPDGA
Sbjct: 62  DQTRPLGLIVCRGTAVMLVSPTDGTDEISNPFVQPDGA 99

[Close]
BLAST of CaUC10G192250 vs. NCBI nr
Match: XP_022152570.1 (sm-like protein LSM7 [Momordica charantia] >XP_022152571.1 sm-like protein LSM7 [Momordica charantia])

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-46
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTR LGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 62  DQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]
BLAST of CaUC10G192250 vs. NCBI nr
Match: KAF3452671.1 (hypothetical protein FNV43_RR03104 [Rhamnella rubrinervis])

HSP 1 Score: 195.7 bits (496), Expect = 2.8e-46
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTRPLGLIVCRGTAVMLVSP DGTDEIANPF+QP+GA
Sbjct: 62  DQTRPLGLIVCRGTAVMLVSPTDGTDEIANPFLQPEGA 99

[Close]
BLAST of CaUC10G192250 vs. ExPASy Swiss-Prot
Match: Q9SI54 (Sm-like protein LSM7 OS=Arabidopsis thaliana OX=3702 GN=LSM7 PE=1 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.8e-43
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 0 

Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFI 140
           DQTR LGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 62  DQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

[Close]
BLAST of CaUC10G192250 vs. ExPASy Swiss-Prot
Match: Q9UK45 (U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens OX=9606 GN=LSM7 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-28
Identity = 56/96 (58.33%), Postives = 75/96 (78.12%), Query Frame = 0 

Query: 49  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQ 108
           +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  IE++RDPDD  K T+ 
Sbjct: 8   KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTED 67

Query: 109 TRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           TR LGL+VCRGT+V+L+ P DG + I NPFIQ   A
Sbjct: 68  TRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA 103

[Close]
BLAST of CaUC10G192250 vs. ExPASy Swiss-Prot
Match: Q9CQQ8 (U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus OX=10090 GN=Lsm7 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.0e-28
Identity = 53/92 (57.61%), Postives = 74/92 (80.43%), Query Frame = 0 

Query: 49  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQ 108
           +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RDPDD  K T+ 
Sbjct: 8   KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTED 67

Query: 109 TRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQ 141
           TR LGL+VCRGT+V+L+ P DG + I NPF+Q
Sbjct: 68  TRQLGLVVCRGTSVVLICPQDGMEAIPNPFVQ 99

[Close]
BLAST of CaUC10G192250 vs. ExPASy Swiss-Prot
Match: Q54HF6 (Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum OX=44689 GN=lsm7 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-25
Identity = 52/90 (57.78%), Postives = 71/90 (78.89%), Query Frame = 0 

Query: 49  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQ 108
           +KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+  EF+RD +DPL TTD+
Sbjct: 8   KKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDE 67

Query: 109 TRPLGLIVCRGTAVMLVSPVDGTDEIANPF 139
            R LGL+VCRG++VM+V P +G + I NP+
Sbjct: 68  KRFLGLVVCRGSSVMMVCPTEGCEPIDNPY 97

[Close]
BLAST of CaUC10G192250 vs. ExPASy Swiss-Prot
Match: O74499 (U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=lsm7 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.3e-25
Identity = 53/103 (51.46%), Postives = 78/103 (75.73%), Query Frame = 0 

Query: 40  SSPLPLKSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDP 99
           +S  P +  RKE++LDL+++ D+ +Q   TGGRQ+TG LKG+DQL+NLVLD+  E LR+P
Sbjct: 12  NSSQPTERPRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNP 71

Query: 100 DDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 143
           +D  K T   R LGL+V RGT ++L++P+DG++EI NPF+Q +
Sbjct: 72  EDG-KLTGAIRKLGLVVVRGTTLVLIAPMDGSEEIPNPFVQAE 113

[Close]
BLAST of CaUC10G192250 vs. ExPASy TrEMBL
Match: A0A5A7TXR7 (Sm-like protein LSM7 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00460 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 7.2e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 62  DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]
BLAST of CaUC10G192250 vs. ExPASy TrEMBL
Match: A0A0A0LD28 (Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G697950 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 9.4e-48
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 62  DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]
BLAST of CaUC10G192250 vs. ExPASy TrEMBL
Match: A0A6J1DI46 (sm-like protein LSM7 OS=Momordica charantia OX=3673 GN=LOC111020268 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 8.0e-47
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTR LGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 62  DQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]
BLAST of CaUC10G192250 vs. ExPASy TrEMBL
Match: W1PP03 (Sm domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00022p00235920 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.4e-46
Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 46  KSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 105
           ++GRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT
Sbjct: 49  ENGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 108

Query: 106 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           TDQTRPLGLIVCRGTAVMLVSP DGTDEI+NPF+QPDGA
Sbjct: 109 TDQTRPLGLIVCRGTAVMLVSPTDGTDEISNPFVQPDGA 147

[Close]
BLAST of CaUC10G192250 vs. ExPASy TrEMBL
Match: A0A1S3TGW6 (sm-like protein LSM7 OS=Vigna radiata var. radiata OX=3916 GN=LOC106755385 PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.3e-46
Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTR LGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 62  DQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]
BLAST of CaUC10G192250 vs. TAIR 10
Match: AT2G03870.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 176.8 bits (447), Expect = 1.3e-44
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 0 

Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFI 140
           DQTR LGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 62  DQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

[Close]
BLAST of CaUC10G192250 vs. TAIR 10
Match: AT2G03870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 176.8 bits (447), Expect = 1.3e-44
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 0 

Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFI 140
           DQTR LGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 62  DQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

[Close]
BLAST of CaUC10G192250 vs. TAIR 10
Match: AT2G23930.1 (probable small nuclear ribonucleoprotein G )

HSP 1 Score: 61.2 bits (147), Expect = 7.7e-10
Identity = 29/75 (38.67%), Postives = 48/75 (64.00%), Query Frame = 0 

Query: 55  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGL 114
           DL K++DK +Q+KL   R VTGTL+G+DQ +NLV+D  +E        +   D+T  +G+
Sbjct: 9   DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGM 68

Query: 115 IVCRGTAVMLVSPVD 130
           +V RG +++ V  ++
Sbjct: 69  VVIRGNSIVTVEALE 74

[Close]
BLAST of CaUC10G192250 vs. TAIR 10
Match: AT3G11500.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-09
Identity = 27/75 (36.00%), Postives = 44/75 (58.67%), Query Frame = 0 

Query: 55  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGL 114
           DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  +E            D    +G+
Sbjct: 9   DLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEV---------NGDDKTDIGM 68

Query: 115 IVCRGTAVMLVSPVD 130
           +V RG +++ V  ++
Sbjct: 69  VVIRGNSIVTVEALE 74

[Close]
BLAST of CaUC10G192250 vs. TAIR 10
Match: AT2G23930.2 (probable small nuclear ribonucleoprotein G )

HSP 1 Score: 54.3 bits (129), Expect = 9.4e-08
Identity = 26/70 (37.14%), Postives = 44/70 (62.86%), Query Frame = 0 

Query: 60  VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRG 119
           +DK +Q+KL   R VTGTL+G+DQ +NLV+D  +E        +   D+T  +G++V RG
Sbjct: 1   MDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGMVVIRG 60

Query: 120 TAVMLVSPVD 130
            +++ V  ++
Sbjct: 61  NSIVTVEALE 61

The following BLAST results are available for this feature:
BLAST of CaUC10G192250 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038903588.11.5e-47100.00sm-like protein LSM7 [Benincasa hispida] >XP_038903589.1 sm-like protein LSM7 [B... [more]
XP_004149601.11.9e-4798.98sm-like protein LSM7 [Cucumis sativus] >XP_004149602.1 sm-like protein LSM7 [Cuc... [more]
XP_011625467.11.3e-4696.94sm-like protein LSM7 [Amborella trichopoda] >XP_011625468.1 sm-like protein LSM7... [more]
XP_022152570.11.6e-4698.98sm-like protein LSM7 [Momordica charantia] >XP_022152571.1 sm-like protein LSM7 ... [more]
KAF3452671.12.8e-4695.92hypothetical protein FNV43_RR03104 [Rhamnella rubrinervis][more]
BLAST of CaUC10G192250 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SI541.8e-4392.47Sm-like protein LSM7 OS=Arabidopsis thaliana OX=3702 GN=LSM7 PE=1 SV=1[more]
Q9UK451.6e-2858.33U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens OX=9606 GN=LSM7 PE=1 SV... [more]
Q9CQQ88.0e-2857.61U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus OX=10090 GN=Lsm7 PE=1 S... [more]
Q54HF61.7e-2557.78Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum OX... [more]
O744996.3e-2551.46U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 97... [more]
BLAST of CaUC10G192250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TXR77.2e-48100.00Sm-like protein LSM7 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264... [more]
A0A0A0LD289.4e-4898.98Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G697950 PE=3 SV=... [more]
A0A6J1DI468.0e-4798.98sm-like protein LSM7 OS=Momordica charantia OX=3673 GN=LOC111020268 PE=3 SV=1[more]
W1PP031.4e-4694.95Sm domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00022p002... [more]
A0A1S3TGW62.3e-4696.94sm-like protein LSM7 OS=Vigna radiata var. radiata OX=3916 GN=LOC106755385 PE=3 ... [more]
BLAST of CaUC10G192250 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G03870.21.3e-4492.47Small nuclear ribonucleoprotein family protein [more]
AT2G03870.11.3e-4492.47Small nuclear ribonucleoprotein family protein [more]
AT2G23930.17.7e-1038.67probable small nuclear ribonucleoprotein G [more]
AT3G11500.11.7e-0936.00Small nuclear ribonucleoprotein family protein [more]
AT2G23930.29.4e-0837.14probable small nuclear ribonucleoprotein G [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 54..127
e-value: 2.5E-23
score: 93.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 55..127
e-value: 4.2E-20
score: 71.2
NoneNo IPR availableGENE3D2.30.30.100coord: 32..137
e-value: 2.8E-32
score: 112.8
NoneNo IPR availablePANTHERPTHR10553:SF30BNAA06G33630D PROTEINcoord: 47..142
IPR044641Sm-like protein Lsm7/SmGPANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 47..142
IPR017132Sm-like protein Lsm7CDDcd01729LSm7coord: 50..138
e-value: 6.74473E-60
score: 177.778
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 56..130

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC10G192250.1CaUC10G192250.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000956 nuclear-transcribed mRNA catabolic process
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:1990726 Lsm1-7-Pat1 complex
cellular_component GO:0120115 Lsm2-8 complex
cellular_component GO:0097526 spliceosomal tri-snRNP complex
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0071004 U2-type prespliceosome
cellular_component GO:0005688 U6 snRNP
molecular_function GO:0003723 RNA binding