CaUC10G191480 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC10G191480
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionDNA-directed RNA polymerase subunit
LocationCiama_Chr10: 25781114 .. 25791581 (-)
RNA-Seq ExpressionCaUC10G191480
SyntenyCaUC10G191480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAAGGGAGACTGTATTTCATCTACCAGATGACTCCCACCTTTGCCAATCTGATCCTTCCTAAAGAAGTTTCAGATGTATCTGGCAATTGCTGGTACAACTTTGCTGGAAAATTGGAACATTGAAAGATACTACAGGAGGAAATGAGAAAGGGTTGGCTGAGCTAACGTAAGACGCCTCCCTTGACAATGGGGACTCATTCCACTTCATCAACTCAGGCAAATGGACTCTTGCCTTCACTCCCCTATTTTGATAAATTAATAGAAGTCCAAACGCAAATAAATAAAACTTCAGAATATCTAGAAGTTCAAGATTTAAAAACTTCTACATGTATGACCTTACATGAACAAATTTGTTTTCCAGATTGTATAACTGTGTTCTTGAGTTCTAAGGAGGCAAAAACTTCTATACATTGATAATAAAACAATATCATTTGTCTTTGTAAAAGGGTGGAGTGAATCTTAATTTCCCTAAAGAATGAAACCTTCAACAATTTCCATCATCAGGCCTAGGAGAGAAATCTGATAAAAATTAGCAGCCACCAAGAGTGAGAAAAGGGAATATAAGGTCATATGCTCTTTTAGAACTGTGGAAAACAAGATATTCTCTCCAGAAATCAAGTCAACGAAATCCCTGTGTATTTTACTCTAAGCATTCTCTAAATCAAGCTTACAGATGAATCCTTTTTGGCCTTCTTTCTTCTGCAGGTGCATTTCGTATTTTAACCTTAATAGATGATTCATCTCTTCAATCTACGTCGGACATGGAGAAAATAGCTTTTGTCTTTTGTGAAGCTTATTAGTGTTCCCGGGTGCTTCCCATGCATCTTACTTGGCTCGAGAGGAAGATGTGTCCATCAAGTCTGTAAGCTGGAAATATCTATCTGGGTGGTTGGATCTTAGTATGTTATGCTAAATTGCTCATCGTAGACAGGTCTGGGTAGTCTAGCCTTAGGAACTTAAATGTTTCAGCTTGTGGTTGTGTTGTACAACCAAGGGAAGGACTAGTAGGCGCTGGAATGGAATATCATTTATAGTCTAGAATTGGATCTGAGGCTCTTTATTAGGAATGAGGGACCATAATGTCACGTGGTTAGCGTTTCAACCTAACCAACTGCGCTGCACTTGTGTGATCTTGCTGTCAAAGGTCACGCCAAGTAAGCCTATTGAAATTTAAGGATCGTTTCCTCCCTAGCGCAATCGGGTGAGATTGGCAAAGGAAGTGGACTAGCAAGGAGGACTTAAGAGTTAGAGTGAATGAGAGCTTTAGAAGGGGAGCTTCACCAACCGGTGAGAGAATGCACAAGCTTTTGAAGTTGGCTTGTATTGCTAATTCTCTGTCTATGCGTTTACAAATGGGGGCCCCTCCTCATATTTTTATAAGGGGGCTTGCCGACTTAGACTTATGAAGACCGACTCACTATGTTGGTCAAGAGTGATCTAGACTCTTCTTCTATGTACAAGGGCGGCAATCCTATGTACAAGTCTAGACTCCACCGACTTAGGCCCCTGCTAGAACTATTTAGACCTATCAAGGGCCTTCTAGCTATTTACATGGATGTCCGACTGTCAAAGAAGGTTCTGGAATTGCCTAGCACGCTTCCATCCCGTCTATGTCGAAGGCACACGCCTGAGGCTTGGACGTGGCCCGATGACACTTGCATCCCGTCTGCATGCGATGGCATCCTCCTGCAGCGGCTTTGTCAACGCCTTGGCCCTTCACTCTCGACCTTCCCTTAGCGATGCGGGGCGAGTCAAAGGCGTTTGTGTCGCGGTTTGAAATGGCGTTATTTCCATCCGTGACAATAAGCTTCCCTTAAGCGCTCAAGATGCAGTTAACTCAAAACATGTTTATCATGTGGCTGAGCAAACTGTAGTTGCACTTGTCTTTGTGAAGAGTGAAGGTGAAGCAACCTAACATTAGAGTAGAATGGATGACTTGCAACTGAAAGACAGTTCTTTGAATCAATATAACACACCATGTAATGGAAATCAAATGTTGGTCTAGATTCTGTAGTTCGTATAATTTGGGCCCCAATGGTGGTGGTTCAATTTGTCGCATAAACAGGAGCAACCAACTCCCGTCTCTCCCTTTCTGGGAAATGGCTGCCTCCACGAGCCTTCACGGGCACGTAATTGAGTGGATGGGGGAACTGTGAAGCAGATGTGGAATAAGCCGGAGTTTCATGGTACAGTCTAAAAGAGGGTCATCTGGTCTGCCAAGAAAATTAGAATTGTCAATTCCATTAAATTGAGGTTCAGTCTGTAGTAACTTTTGCATAAAATGGAAAATGGACTGGACGATCACACAAAATCTGTAAAGTTTTTACGAGAGGGGGAAAGAAAATTTTATAGGTTGTGATCTACCCCTACAAGGACACGGGCGTCGAATAATATGGTGATTATTATAAAAAGAATAATATGGTGATTCATTTTTTTAAGTTGTACAACATTAGCATAGCCTTATTATCCTGCACAACTTACTATTATTATTATTATTCTGAATAGATGTAAAACATTACCGTTCTTTTGTTTTCTGAAACTTATAGGTAGATGATATATTACAGAGAACGAGACGTTTTAGAATGATGTTCCTTTGTTGTTTATTTCTCTCTATTCTCTAAACAGGTTTTTGTTTTGTTTTTTTTGTTTTTGCCTATACTGTAGCAACATGTCCAAATTGTGGGTTTGGCAAGGCTGCTTTTATACAAATACAACTGAGATCAGCTGATGAACCTGCTACAACATTTTACAAGTGCATGAACGAAAACTGTAGGCATAACTGGCGCGAGGATTAAGGGCCAAGTTTTTAACTACTCATTTTCTATTTTTTATTTTATTTAAAGTCATTTAGAAGTAATTTCTATGAATAAAATATATTTTTTAAACCTGAATAGCATTATAATTTATGAATCATGATGGCACTTCAGAATGAGAATCATGTCATAATTGTATTTCGATAGCTATTTTGTTCTTAGTTTTTGCATTTTGTTGAAAAACAAAATTCTTTGATTATCCATCCAGTTCTAGGTTTCTGAACTTTGAAATGGCAAGAAAAATTTTAACAAAGAAAAAGGTTGGAAGAAGAAAAATTACCAGGTCTTGTTTCTTCCAATATCTTTCCGTTCTTGAAGGCTTATGTTTTTCTTCTCTTAAACATATTTTCTCTCGTTCTAATTGATTCTTGCTTTTCCCCTGCTGTCTACAATACTTGATTATAATTGTTATTTGAACCATATGTTTTATTTTTTGGGTTGTTTTTAAATATAGTAAAATGAGTCAAATTATTTACAAATATATAAATTTTACTATCTATAAGCAATAAGACTTCTATTGCTTAAGCGATAGATCCCGATAAGCATTTATTACTCAAGTGATAGTAGTCTATTACAGTAATGAAATTTTTTTATATTTGTAAATAGTTTGATATTTTTTTATTTATAATAATTTTTGTTGTTTATTATTATTATTTTTTTAATATGAAACAGGAAATTTCATCGTGGAGATGAAATTATAGGAGCACAAAAATTCTCTCCAAATGACCCTGAGACTAGATAAACTATAATTACATGGAGGATTCAATTTACACCAAAGAAATAAAAAATAATAATAATAAAAGTATCGAAAAGGCTGGGTAATTTTGTTCCTTATCTGCAAAGACACGTGAGTTTTAGTGCATGTATAGGAGTGATCTTAAAATCGTTAAAGTCACTTTTGTCATTTTTTAAAATCGCTGAAAACACATTTTAAATCATTTAAAATTAGTTTAGTTTTCAATTTTACACTTTTATGAAATTTTCATATCATCAAAATTAGTTTTGAAGGAGAATAAACATGTTTTACCGTAATTTTGAAAACGACGAAAGTGATTCTAGCCATTTTGAAATCACTCCAAACATGCCCTTAATGTAATTTGGTAGAAATGTATTTTTCTTTTTGACTATTGAATAATTGGGAGATAAAAATGTTATTTGAGTACTATATGGATTATTTAGTAAGGTAATACTTTCTTGCTTAATTTTCTTTTTCTTTTTCAATTCTCAAATAAACTCAATGGATTCCAAATCTTCCAATTGGGTTTTAAAGAGATTAATCTCTTTGGGTGCGGATGGGGAGGATCTCGTCATTTGAGGATTCAGGTCGACTTTGTCACTTTCGATCACTCTTGTACCTATGAAGCACATCACTAGTGCAAGCATACAAAATGCAAAAGTTTGCAACTAACCTCATTCAACCTATTATCAATACGCCCCTAAAGACATCACAATTCTTCCTTAACTTTATCGAACTCATTATCAACATGCCTCTCAAGACGTTGCAACTTTTCCTTACCCTCATTAAACTCACCTATAATTGTGGTTCAAGTCATCTATAGCCGTATGTTAAATGTCAAAAGTCACATTTTCATCTTCTTGATTAATAGTTTCATCTTCACATGTTGTAGGTTCTACAACATGGTCATTATGAACCGTTTGTGATGTTGATGCTTGGGGCAGCCTAGTTAGTCTGAGTTGCTCCACCTAAGATACATGGTTCTCAAATTGATTTTCGTATCATGATATCGTTGTTAACTTTCCAACAGGTGGAGCACAGAAGAAACTCTGTCTGCATTGAATGAACAAGTTATTATATACAATTGAATGATCAATCTACCTACATTGTTGTATACAAGTAATTGTAGATGTGAAGTAAATGTACATGTTTCTAACTTTAGAACTTTTGAATACATGTTGTCAGAGTATATCAAATTTAGTAGAGTGGGAGAATGACCACCTCAGCATGCGAGGCACTGCAAGTACATTAACCTTGTCTATAACCTCCATGTCAGTGTATATGCCCAAACCTACAAACAAAAAAGAAACATATATTACATTATGTAAAAAAGATGTCAAAACACACAGGACAACATGGGAAATGTGAAATACTTATAATGCAAATGGGAATTCAACGAGGGTATGCTTCATAATAAAATGCTTGTTTACACGATGGCTTTTTGCTTATATCATTATATGAAGGGACTTTGTCCATCAAGCGAGAACACTTCATGGACTCCAATGTCCTATCCTGTATGATGGTTCCCTAGTCTTATCTCTAGAAATACTCCAAATTCTTAATGTCCTCGTACAATAATTTGTCAACATAGGTCTTGAACTTATACTTACCCATCATTGCAAGCTCGATGTGGTACATCAGAAAGACATTCAAAGCATCATCATCGTTCTCAACTGCAAAGTCTTGTAAATTTCCTTGAACTTAAAAAGTTTGATTTGCCTCATCATTAAAGTATTTTGTTTGGAAACGTGTGGATGACATCTCATCTGCACGCTCTTAGGGGATGACCAAATTAGTCCAGTTATTGAAATAAATTCTCCTTTGGAAAATGTAACAAACGTAACCCCCAACTAAAAACTCGTCACATATGGTTTCTCACCCATGACCTCCCTTAGAGTTAGAGAGAGTTTATGCAACAATGGAATGTTAAATACCACATCAACGTCAACCAAACCCTTGAATATTGTTCTCCTGAACATATCAGTTGTGTAGGGGTTAGCTTTTCTGAATTGTATGGCTTTGTTTTCATTTCCAAAGTGGTACAAACAAGTAATTCAACCGGAAAAGTGATCCCCTACATTGATCTTTAGAGTATCAACCATTTTAGTCCTAAAAAGGAAATAGTAAGAATAAGACGCATAAAGAATGATTAAAAAATAATGCTAACAAAATTCCCTATGAGACTAGCGACGTGACCACGACGAGACTCGCTACACACTAATAGTCGCGCTACAAGTGGTAGCTCAAGTCATTGCATGTTATGCCATGAGCTGTTTTAAACTCACTGATGGGATTTGTATAGATATGGACCAAATCTGTGCCCGGTACTGGTAGGGTTCCTCTAAGGACAAAAAAAAAAAAAAGATGGAAGAAGGTTATGTACAAGTGACTGGGCTTTAGGGATTTTAAAATTTTTAATCAAGCTTTGCTGGCGAATAATCATGAAGAAGCTGGAGAGCTTTTTGGCTAGAATTTTGAAGAGGAAGTATTTCCATAATGGACATTTTATGCAAGCCAAGTAGGGTCGAGGAGCATCTTATGGGGGAGAGTTGTTTGCTAAGGGCTATAGGTGGCGAATGACCCCTGGATTTCCAATGGAGGAGATTTCAAACCTAGCTGAGTGTATGACAATATAAAAAATGAAAAAATTTTTTGTTTCTTCTTGTGGCTAGAAGCTCTTGGAATGAAGCCTTAATTAGAATCTGCTTGATGTTTGTGATATTCTTAACATTCCTGTCCGTTGGGGGAGATTTGCTGATGATGAGATCTTTTGGAGTTTTGACAAAAGAGGCCAGTTTTCAATAAAAAGTGCCTACTTTTTGGGGGTGAAGTGTTGGAAAATTTTATTAACCTTATCCCCACCTCTTGTAACCTTAGTAAGTTTACTATGAAAGTTTGGAGTTATTTCTTCCCTGCTAATGTTGGTATGTCTAGTGTTGATACCAACAGTTAGTCTCCCTTGGATTATTGGGACTACTTGAGTCATATGTGTTTGTGTGAAGGTCTAAATTGTGCTTTGATCATCCTTCCTTTGGAGAGTGAAACTTGCACAATGATATTTTCTTTAGGAAGGGAGTTCCTAATCTTGTCGTTTTGAAGAGCTCGATTGAAGCTCATCTTTAGGATAGCATGGGTGAGGATAAGGGTTGAGGGTCGTGAATGCTCCCCCTTCTCTAACTCTACTATCCTCTATTTGTGTTGGAGGATGAAGCTATTTTGGAGAGTCTTGTTGCAGTCAAGCGCTGAGTAGTCCAGAACCAATCCGCCGTTAAAGGTGAAATCTGATGCTTTTTGGAAGTGATCAACGTGTTGAACATGAAGGAGAATTCTTTAGCTGAGATTAGGGTCCTCATTAAAGACATTATTTTTATTACAAACTTTGTTAATATCTCTCATTCTTGTCACATTCTTAGAGAAGAGAACAAAACTGCTCATGCTATTGCAACTTTGGCATCCTCTTAAGCCTGTTTTTTGCTTTGGAAAGATATCTTTCCTGATTGTATTCTCCCTCTCATCCGTGACGAGGAAGTGAGGAAGTAGTCGGTTGTGGTTCTCTTGGTTTCTTTCACTAAAAAAATATAAAAATTGATTTCAAAAATAAAAATGGTAATATCAAAGAAAAAAGGTTGGAACATGATATTAAATTTTCATCGACATGATAAAATGAGCTTAGTTTAGTGGTAATTAACACGACTTTCCATCCTAGAGGTGGAAGGTTCGATCCCCTCCCCCTATTCCTACTATTATTGTACTAAATAAAAAAAAAAAAAAATTTCATTGATATGTCGGCATTCCATATACTTTTTTATATGCGCTTCTTTTATTTTATTTCATTTTAGTTCACTATATTTTCTTCTTATCCTTTAATTTTTTTTTCTTGCAGTAATTGTTTAAAACTTTTGGTTTTTCTTTCTTTTCTTTTTTCTTTTATAAAGAATTTCTCCCTCCCTATTTCTTTCCTTCTTTGTTGCATCACTTATTTTCATACTTTTTTTTTAAATAATTTGCTTCCATTTTTTTTTTTCAAGAGTTGAACTACGAGCAACTTGTGCTCCGACTTATCATCAACTATAATTTGCAATAGTGATCTACCTCTTGCTAGAGACATCATCTTTTTCAGATGATTATTGCTGGTCACTAGTTCTGCCAATAGTTATTTGTCTCCTACTATGGATATCATCTTTTTTGGTAGCCTGAAAGTTTTGGGTTTAAGCCTAATAGTGCCCATAAGGTAGATAGTAAATCAGATAGCACCACCAAGTACTTTGTATCAATCAATATGTGTATCGTTATAAAATATATCAATAATATATCAGTCAAGTGTATCAACAGTATAAACATATATATCATTATAAAATATATCGACAGTATGTCGTTCAAATATATTAATAGTGTAAAACGAGTGTAATATTATAATGTATGTCAACAATATATTGATCAAATGCATCAACGGTATAAACGTGTGTATCATTATAAACTATATCAACAATATATCAATCAAGTGTATCAATAATATAAACATGTGTATCATTATAAAATATATCTATAGTATGTCGGTCAAGTGTATTAGCAGTATAAATGAGTGTATCATTATAAAATATATCAACAATATATCAATAAAGTTTATTAGCAGTATCATTATAAAAAAATATCAACAGTATGTTAGTCAGGTATATTAATAGTATAAATGAGTGTACCATTATAAAGTATATCAATATAATTTCAATAAAGTTTATTAGTAGTATGTTAACAATATTATATCAGATTATATTTCAACATCGTTATATCATCAACTGAAGTATATTTTTTAAAATTAATTGGTTGAAAAATATTTTACTTTAAATAATTTGGTTGTAATTTTTTTTTCCAAATTGGAGAGTAACAGTAACAAAACGGGAATGAAATAAAAATCTTTAGGAAATTAAGCATAACATGAGTGTATCAAATATCAATAATAGATACTTGAAGTAGCACATGTGTCTATTATACTTAAGACATGAGTGTATTAACGATATATCAGACCTAAGACATGAGTATATTAACGATATATCAGACATAAAACAGTAGTGTACCAAGGGTATCAAGTTTATCGCATGTATCGAGTATCAACTGTATTAAATATATCACGCATGTGTATCTGGTATATCAAATGTGTATCAAGGGTATAAAATATATCAGGTGTTTCACGCGGGCTGGGCTTGTATTTTTGTCATTTTTTCAAAAGTAATAATTTAGGATTATGGACCTAATTAATGTGTTTTGTTTGGCTCTTTTTGTAAGTTCCCCTTATAAAAATATATGTGAAACATAGAAAAATAAAGAATAAAATATCACTAATATAAATATAATATAAATAGAGAAAATATTTTAACTGATAAAATTGTTGAAAATATTTACAAATAATAGCAAAATATCATAGTTTTTCTGTGATAGACTGCAATAAACTATTATCTGTGTATATTTATAAACATTTTGGTTCATTTTCTTATATTTGAAAATCATCCATATAAATAATAAATGTTTCAAAAAAATGTAGAATATATATTTATTAATTGGAAAATTATTTTAAATGATAAAATCATTGAAAATATTTACAAATAATAGCAAAATATCATCGTTTATATGCGAATAGATAATAAAATTTTGATATATTTGTAAATATTTTAGTTTATTTTTTTATATTTAAAAACAACCATTATTAATTTGAAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTTTTTTTTTTTTTTTTTTTTTTTTTGTGGTAATGTTTTTAAAAAGTATCCATGGACATTGACTATTCCAATCATTTTTCTTTTTTTTTTTGGAGAAAAACTATTCCAATCAACATTTAGAACAACACGTTTTTGTCAACATCGATATATTAAATCTTGGTTTGAGATAGTTGGAATAAAAAACAAAAAAAAAAAGATTGACATTTTTCAGAAATATCTTATCTCTATGGTTATCGCGAAGAACAGAAGTATGAGATAATTGTGAAGCCCGAGAAAGGGATTTTCTTGTAA

mRNA sequence

ATGAGAGGAAATGAGAAAGGGTTGGCTGAGCTAACCTTATTAGTGTTCCCGGGTGCTTCCCATGCATCTTACTTGGCTCGAGAGGAAGATGTGTCCATCAAGTCTGTAAGCTGGAAATATCTATCTGGGTGGTTGGATCTTACAACATGTCCAAATTGTGGGTTTGGCAAGGCTGCTTTTATACAAATACAACTGAGATCAGCTGATGAACCTGCTACAACATTTTACAAGAGAATAAACATGTTTTACCGTAATTTTGAAAACGACGAAAGTGATTCTAGCCATTTTGAAATCACTCCAAACATGCCCTTAATGTGGAGCACAGAAGAAACTCTGTCTGCATTGAATGAACAAAGTATATCAAATTTAGTAGAGTGGGAGAATGACCACCTCAGCATGCGAGGCACTGCAAAAATATCTTATCTCTATGGTTATCGCGAAGAACAGAAGTATGAGATAATTGTGAAGCCCGAGAAAGGGATTTTCTTGTAA

Coding sequence (CDS)

ATGAGAGGAAATGAGAAAGGGTTGGCTGAGCTAACCTTATTAGTGTTCCCGGGTGCTTCCCATGCATCTTACTTGGCTCGAGAGGAAGATGTGTCCATCAAGTCTGTAAGCTGGAAATATCTATCTGGGTGGTTGGATCTTACAACATGTCCAAATTGTGGGTTTGGCAAGGCTGCTTTTATACAAATACAACTGAGATCAGCTGATGAACCTGCTACAACATTTTACAAGAGAATAAACATGTTTTACCGTAATTTTGAAAACGACGAAAGTGATTCTAGCCATTTTGAAATCACTCCAAACATGCCCTTAATGTGGAGCACAGAAGAAACTCTGTCTGCATTGAATGAACAAAGTATATCAAATTTAGTAGAGTGGGAGAATGACCACCTCAGCATGCGAGGCACTGCAAAAATATCTTATCTCTATGGTTATCGCGAAGAACAGAAGTATGAGATAATTGTGAAGCCCGAGAAAGGGATTTTCTTGTAA

Protein sequence

MRGNEKGLAELTLLVFPGASHASYLAREEDVSIKSVSWKYLSGWLDLTTCPNCGFGKAAFIQIQLRSADEPATTFYKRINMFYRNFENDESDSSHFEITPNMPLMWSTEETLSALNEQSISNLVEWENDHLSMRGTAKISYLYGYREEQKYEIIVKPEKGIFL
Homology
[Close]
BLAST of CaUC10G191480 vs. NCBI nr
Match: KAG6597716.1 (DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-07
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 49  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN 81
           TCPNCGFGKAAFIQIQLRSADEPA+TFYK +N
Sbjct: 107 TCPNCGFGKAAFIQIQLRSADEPASTFYKCMN 138

[Close]
BLAST of CaUC10G191480 vs. NCBI nr
Match: KAG7029162.1 (DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-07
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 49  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN 81
           TCPNCGFGKAAFIQIQLRSADEPA+TFYK +N
Sbjct: 113 TCPNCGFGKAAFIQIQLRSADEPASTFYKCMN 144

[Close]
BLAST of CaUC10G191480 vs. NCBI nr
Match: XP_022932603.1 (DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata] >XP_022932604.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata] >XP_022972319.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita maxima] >XP_022972320.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita maxima] >XP_023539106.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita pepo subsp. pepo] >XP_023539107.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-07
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 49  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN 81
           TCPNCGFGKAAFIQIQLRSADEPA+TFYK +N
Sbjct: 70  TCPNCGFGKAAFIQIQLRSADEPASTFYKCMN 101

[Close]
BLAST of CaUC10G191480 vs. NCBI nr
Match: XP_038903069.1 (DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida])

HSP 1 Score: 65.9 bits (159), Expect = 3.8e-07
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 49  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN 81
           TCPNC FGKAAFIQIQLRSADEPATTFYK +N
Sbjct: 70  TCPNCAFGKAAFIQIQLRSADEPATTFYKCMN 101

[Close]
BLAST of CaUC10G191480 vs. NCBI nr
Match: XP_004141147.1 (DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus] >XP_008465337.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis melo] >XP_008465338.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis melo] >KGN59770.1 hypothetical protein Csa_002120 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 3.8e-07
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 49  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN 81
           TCPNC FGKAAFIQIQLRSADEPATTFYK +N
Sbjct: 70  TCPNCAFGKAAFIQIQLRSADEPATTFYKCMN 101

[Close]
BLAST of CaUC10G191480 vs. ExPASy Swiss-Prot
Match: Q04307 (DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC11 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.7e-05
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 0 

Query: 48  TTCPN---CGFGKAAFIQIQLRSADEPATTFYKRINMFYRNFEN 89
           T CPN   CG   A F Q+Q+RSADEP TTFYK +N  +R  EN
Sbjct: 67  TQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110

[Close]
BLAST of CaUC10G191480 vs. ExPASy Swiss-Prot
Match: Q9Y2Y1 (DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens OX=9606 GN=POLR3K PE=1 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 1.4e-04
Identity = 23/56 (41.07%), Postives = 33/56 (58.93%), Query Frame = 0 

Query: 25 LAREEDVSIKSVSWKYLSGWLDLTTCPNCGFGKAAFIQIQLRSADEPATTFYKRIN 81
          L   +DV   + +W+ +    +  +CP C   +A F+Q+Q RSADEP TTFYK  N
Sbjct: 46 LKEVDDVLGGAAAWENVDSTAE--SCPKCEHPRAYFMQLQTRSADEPMTTFYKCCN 99

[Close]
BLAST of CaUC10G191480 vs. ExPASy Swiss-Prot
Match: Q9CQZ7 (DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus OX=10090 GN=Polr3k PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.4e-04
Identity = 23/56 (41.07%), Postives = 32/56 (57.14%), Query Frame = 0 

Query: 25 LAREEDVSIKSVSWKYLSGWLDLTTCPNCGFGKAAFIQIQLRSADEPATTFYKRIN 81
          L   +DV   + +W+ +    +   CP C   +A F+Q+Q RSADEP TTFYK  N
Sbjct: 46 LKEVDDVLGGAAAWENVDSTAE--PCPKCEHPRAYFMQLQTRSADEPMTTFYKCCN 99

[Close]
BLAST of CaUC10G191480 vs. ExPASy TrEMBL
Match: A0A6J1IB59 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470892 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-07
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 49  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN 81
           TCPNCGFGKAAFIQIQLRSADEPA+TFYK +N
Sbjct: 70  TCPNCGFGKAAFIQIQLRSADEPASTFYKCMN 101

[Close]
BLAST of CaUC10G191480 vs. ExPASy TrEMBL
Match: A0A6J1EXG3 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111439113 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-07
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 49  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN 81
           TCPNCGFGKAAFIQIQLRSADEPA+TFYK +N
Sbjct: 70  TCPNCGFGKAAFIQIQLRSADEPASTFYKCMN 101

[Close]
BLAST of CaUC10G191480 vs. ExPASy TrEMBL
Match: A0A1S3CQ50 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502981 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-07
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 49  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN 81
           TCPNC FGKAAFIQIQLRSADEPATTFYK +N
Sbjct: 70  TCPNCAFGKAAFIQIQLRSADEPATTFYKCMN 101

[Close]
BLAST of CaUC10G191480 vs. ExPASy TrEMBL
Match: A0A0A0LCM4 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G844880 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-07
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 49  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN 81
           TCPNC FGKAAFIQIQLRSADEPATTFYK +N
Sbjct: 70  TCPNCAFGKAAFIQIQLRSADEPATTFYKCMN 101

[Close]
BLAST of CaUC10G191480 vs. ExPASy TrEMBL
Match: A0A6J1DGL3 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111020260 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.4e-07
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 49  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN 81
           TCPNC FGKAAFIQ+QLRSADEPATTFYK +N
Sbjct: 70  TCPNCAFGKAAFIQVQLRSADEPATTFYKCMN 101

[Close]
BLAST of CaUC10G191480 vs. TAIR 10
Match: AT1G01210.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 41.2 bits (95), Expect = 9.3e-04
Identity = 16/28 (57.14%), Postives = 20/28 (71.43%), Query Frame = 0 

Query: 50 CPNCGFGKAAFIQIQLRSADEPATTFYK 78
          CP CG  KA F  +Q+RSADEP + FY+
Sbjct: 68 CPRCGHDKAYFKSMQIRSADEPESRFYR 95

[Close]
BLAST of CaUC10G191480 vs. TAIR 10
Match: AT4G07950.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 41.2 bits (95), Expect = 9.3e-04
Identity = 16/28 (57.14%), Postives = 20/28 (71.43%), Query Frame = 0 

Query: 50 CPNCGFGKAAFIQIQLRSADEPATTFYK 78
          CP CG  KA F  +Q+RSADEP + FY+
Sbjct: 68 CPRCGHDKAYFKSMQIRSADEPESRFYR 95

The following BLAST results are available for this feature:
BLAST of CaUC10G191480 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6597716.12.2e-0790.63DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma s... [more]
KAG7029162.12.2e-0790.63DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma s... [more]
XP_022932603.12.2e-0790.63DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata] >XP_0229... [more]
XP_038903069.13.8e-0790.63DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida][more]
XP_004141147.13.8e-0790.63DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus] >XP_008465337.1 ... [more]
BLAST of CaUC10G191480 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q043073.7e-0556.82DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae (strai... [more]
Q9Y2Y11.4e-0441.07DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens OX=9606 GN=POLR3K ... [more]
Q9CQZ72.4e-0441.07DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus OX=10090 GN=Polr3k... [more]
BLAST of CaUC10G191480 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IB591.1e-0790.63DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470892 ... [more]
A0A6J1EXG31.1e-0790.63DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11143911... [more]
A0A1S3CQ501.8e-0790.63DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502981 PE=3... [more]
A0A0A0LCM41.8e-0790.63DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G844880 P... [more]
A0A6J1DGL32.4e-0787.50DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110202... [more]
BLAST of CaUC10G191480 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G01210.19.3e-0457.14DNA-directed RNA polymerase, subunit M, archaeal [more]
AT4G07950.19.3e-0457.14DNA-directed RNA polymerase, subunit M, archaeal [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 48..87
e-value: 1.3E-4
score: 31.3
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 49..77
e-value: 3.1E-12
score: 46.1
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 46..98
score: 9.338444
NoneNo IPR availableGENE3D2.20.25.10coord: 45..81
e-value: 1.1E-10
score: 42.9
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 47..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC10G191480.1CaUC10G191480.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding